Cmc07g0188421 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0188421
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 6795008 .. 6795568 (-)
RNA-Seq Expression	Cmc07g0188421
Synteny	Cmc07g0188421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTTTGCATTGGTTACAGAGAGCTGAATAAGGTGACAGTCAAGAACCACTATCCATTGCCCAAAATTGATGACTTGTTTGATCAGTTGCAAGGAGCCATTGTTTTCTCTAAGATTGACTTACGTTCAGGCTATCACCAGCTGAAAATTAGAGACAGTGATATTCCTAAAACTGCGTTTCGTTCCAGATATGGGCATTACGAATTCATTGTAATGTCCTTTGGCTTGATCAATGCTCATGTTGTATTTATAGATCTGATGAACAGGGTGTTTAAGGATTTCTTGGACACTTTTGTTATAGTTTTTATTGATGATATCTTGGTTTACTCTAAGACAAAGGCTGAGCATGAGGAGCACTTACATCAGGTTTTAGAGACTCTTCGAGCCAATAAACTTTATGCTAAGTTTTCTAAGTGCGAGTTCTGGCTGAAGAAGATGTCTTTTCTTGGCCATGTCGTGTCTAGTGAAGGAGTCTTTGTAGACCAAGTGAAGATTGAAGCTGTTACTAGTTGGCATCGACCTTCTAGAGTTAGCGAAGCTTGTAGTTCCTGGGTTTAG

mRNA sequence

ATGCGCCTTTGCATTGGTTACAGAGAGCTGAATAAGGTGACAGTCAAGAACCACTATCCATTGCCCAAAATTGATGACTTGTTTGATCAGTTGCAAGGAGCCATTGTTTTCTCTAAGATTGACTTACGTTCAGGCTATCACCAGCTGAAAATTAGAGACAGTGATATTCCTAAAACTGCGTTTCGTTCCAGATATGGGCATTACGAATTCATTGTAATGTCCTTTGGCTTGATCAATGCTCATGTTGTATTTATAGATCTGATGAACAGGGTGTTTAAGGATTTCTTGGACACTTTTGTTATAGTTTTTATTGATGATATCTTGGTTTACTCTAAGACAAAGGCTGAGCATGAGGAGCACTTACATCAGGTTTTAGAGACTCTTCGAGCCAATAAACTTTATGCTAAGTTTTCTAAGTGCGAGTTCTGGCTGAAGAAGATGTCTTTTCTTGGCCATGTCGTGTCTAGTGAAGGAGTCTTTGTAGACCAAGTGAAGATTGAAGCTGTTACTAGTTGGCATCGACCTTCTAGAGTTAGCGAAGCTTGTAGTTCCTGGGTTTAG

Coding sequence (CDS)

ATGCGCCTTTGCATTGGTTACAGAGAGCTGAATAAGGTGACAGTCAAGAACCACTATCCATTGCCCAAAATTGATGACTTGTTTGATCAGTTGCAAGGAGCCATTGTTTTCTCTAAGATTGACTTACGTTCAGGCTATCACCAGCTGAAAATTAGAGACAGTGATATTCCTAAAACTGCGTTTCGTTCCAGATATGGGCATTACGAATTCATTGTAATGTCCTTTGGCTTGATCAATGCTCATGTTGTATTTATAGATCTGATGAACAGGGTGTTTAAGGATTTCTTGGACACTTTTGTTATAGTTTTTATTGATGATATCTTGGTTTACTCTAAGACAAAGGCTGAGCATGAGGAGCACTTACATCAGGTTTTAGAGACTCTTCGAGCCAATAAACTTTATGCTAAGTTTTCTAAGTGCGAGTTCTGGCTGAAGAAGATGTCTTTTCTTGGCCATGTCGTGTCTAGTGAAGGAGTCTTTGTAGACCAAGTGAAGATTGAAGCTGTTACTAGTTGGCATCGACCTTCTAGAGTTAGCGAAGCTTGTAGTTCCTGGGTTTAG

Protein sequence

MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTAFRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEHLHQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSEACSSWV

Homology

[Close]

BLAST of Cmc07g0188421 vs. NCBI nr
Match: KAA0052251.1 (hypothetical protein E6C27_scaffold207G00730 [Cucumis melo var. makuwa] >TYK01815.1 hypothetical protein E5676_scaffold113G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 165/176 (93.75%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 8   RELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTAFRSRYGH 67
           RELNKVTVKNH+PLP+IDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPK AF SRYGH
Sbjct: 293 RELNKVTVKNHHPLPRIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKIAFHSRYGH 352

Query: 68  YEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEHLHQVLET 127
           YEFIVMSFGL NAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTK EHEEHLHQVLET
Sbjct: 353 YEFIVMSFGLTNAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKVEHEEHLHQVLET 412

Query: 128 LRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSEACS 184
           LRANK+Y KFSKCEFWLKK+SFLGHVVSSEGVFVDQ KIEAVTSW RPSRVSEACS
Sbjct: 413 LRANKIYTKFSKCEFWLKKVSFLGHVVSSEGVFVDQAKIEAVTSWPRPSRVSEACS 468

[Close]

BLAST of Cmc07g0188421 vs. NCBI nr
Match: KAA0063946.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 2.3e-85
Identity = 158/180 (87.78%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1    MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTA 60
            MRLCI YRELNKVTVKN YPLP+IDDLFDQLQGA VFSKIDLRSGYHQL+IRDSDIPKTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEH 120
            FRSRYGHYEF+VMSFGL NA  VF+DLMNRVFKDFLD+FVIVFIDDIL+YSKT+AEHEEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 180
            LHQVLETLRANKLYAKFSKCEFWL+K++FLGHVVSSEGV VD  KIEAVT+W RPS VSE
Sbjct: 987  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 1046

[Close]

BLAST of Cmc07g0188421 vs. NCBI nr
Match: KAA0055932.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.0e-85
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTA 60
           MRLCI YRELNKVTVKNHYPLP+IDDLFDQLQGA VFSKIDLRSGYHQL+IRD DIPKTA
Sbjct: 641 MRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 700

Query: 61  FRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEH 120
           FRSRYGHYEF+VMSFGL NA  VF+DLMNRVFKDFLD+FVIVFIDDIL+YSKT+AEHEEH
Sbjct: 701 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 180
           LHQVLETLRANKLYAKFSKCEFWL+K++FLGHVVSSEG  VD  KIEAVT+W RPS VSE
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGFSVDPAKIEAVTNWPRPSTVSE 820

[Close]

BLAST of Cmc07g0188421 vs. NCBI nr
Match: KAA0037397.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.0e-85
Identity = 157/183 (85.79%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTA 60
           MRLCI YRELNKVTVKN YPLP+IDDLFDQLQGA VFSKIDLRSGYHQL+IRDSDIPKTA
Sbjct: 530 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 589

Query: 61  FRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEH 120
           FRSRYGHYEFIV+SFGL NA  VF+DLMNRVFKDFLD+FVIVFIDDIL+YSKT+A+HEEH
Sbjct: 590 FRSRYGHYEFIVVSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAKHEEH 649

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 180
           LHQVLETL+AN+LYAKFSKCEFWL K++FLGHVVSSEGVFV+  KIEAVT+W RPS VSE
Sbjct: 650 LHQVLETLQANRLYAKFSKCEFWLNKVTFLGHVVSSEGVFVNPTKIEAVTNWPRPSTVSE 709

Query: 181 ACS 184
            CS
Sbjct: 710 ICS 712

[Close]

BLAST of Cmc07g0188421 vs. NCBI nr
Match: TYJ97514.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.0e-85
Identity = 157/183 (85.79%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTA 60
           MRLCI YRELNKVTVKN YPLP+IDDLFDQLQGA VFSKIDLRSGYHQL+IRDSDIPKTA
Sbjct: 530 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 589

Query: 61  FRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEH 120
           FRSRYGHYEFIV+SFGL NA  VF+DLMNRVFKDFLD+FVIVFIDDIL+YSKT+A+HEEH
Sbjct: 590 FRSRYGHYEFIVVSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAKHEEH 649

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 180
           LHQVLETL+AN+LYAKFSKCEFWL K++FLGHVVSSEGVFV+  KIEAVT+W RPS VSE
Sbjct: 650 LHQVLETLQANRLYAKFSKCEFWLNKVTFLGHVVSSEGVFVNPTKIEAVTNWPRPSTVSE 709

Query: 181 ACS 184
            CS
Sbjct: 710 ICS 712

[Close]

BLAST of Cmc07g0188421 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.1e-33
Identity = 64/179 (35.75%), Postives = 111/179 (62.01%), Query Frame = 0


Query: 2   RLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTAF 61
           R+ I YR+LN++T+ + YP+P +D++  +L     F+ IDL  G+HQ+++ +  I KTAF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  RSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEHL 121
            ++ GHYE++ M FGL NA   F   MN + +  L+   +V++DDI+++S +  EH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 HQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 181
             V   L    L  +  KCEF  K+ +FLGH+V+ +G+  + +K++A+ S+  P++  E
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKE 440

[Close]

BLAST of Cmc07g0188421 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 8.1e-33
Identity = 73/180 (40.56%), Postives = 108/180 (60.00%), Query Frame = 0


Query: 2   RLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTAF 61
           RLC+ YR LNK T+ + +PLP+ID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  RSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEHL 121
            +  G YE+ VM FGL+NA   F   M   F+D    FV V++DDIL++S++  EH +HL
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 766

Query: 122 HQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSEA 181
             VLE L+   L  K  KC+F  ++  FLG+ +  + +   Q K  A+  +  P  V +A
Sbjct: 767 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQA 824

[Close]

BLAST of Cmc07g0188421 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 8.1e-33
Identity = 73/180 (40.56%), Postives = 108/180 (60.00%), Query Frame = 0


Query: 2   RLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTAF 61
           RLC+ YR LNK T+ + +PLP+ID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  RSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEHL 121
            +  G YE+ VM FGL+NA   F   M   F+D    FV V++DDIL++S++  EH +HL
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 792

Query: 122 HQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSEA 181
             VLE L+   L  K  KC+F  ++  FLG+ +  + +   Q K  A+  +  P  V +A
Sbjct: 793 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQA 850

[Close]

BLAST of Cmc07g0188421 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.3e-32
Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTA 60
           +R+CI YR L KVT+KN YP+P++DDLFD+L  A  F+K+DLRSGY Q++I   D PKT 
Sbjct: 6   LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61  FRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILV---YSKTKAEH 120
             +RYG +EF VM FGL NA   F +LMN V  ++LD FV+V++DD++V   YS +  EH
Sbjct: 66  CVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEH 125

Query: 121 EEHLHQVLET 128
            +HL  V E+
Sbjct: 126 IKHLRVVRES 135

[Close]

BLAST of Cmc07g0188421 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.9e-32
Identity = 66/179 (36.87%), Postives = 111/179 (62.01%), Query Frame = 0


Query: 2   RLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTAF 61
           R+ I YR+LN++TV + +P+P +D++  +L     F+ IDL  G+HQ+++    + KTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  RSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEHL 121
            +++GHYE++ M FGL NA   F   MN + +  L+   +V++DDI+V+S +  EH + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 HQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 181
             V E L    L  +  KCEF  ++ +FLGHV++ +G+  +  KIEA+  +  P++  E
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKE 441

[Close]

BLAST of Cmc07g0188421 vs. ExPASy TrEMBL
Match: A0A5D3BRJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00550 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.9e-89
Identity = 165/176 (93.75%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 8   RELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTAFRSRYGH 67
           RELNKVTVKNH+PLP+IDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPK AF SRYGH
Sbjct: 293 RELNKVTVKNHHPLPRIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKIAFHSRYGH 352

Query: 68  YEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEHLHQVLET 127
           YEFIVMSFGL NAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTK EHEEHLHQVLET
Sbjct: 353 YEFIVMSFGLTNAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKVEHEEHLHQVLET 412

Query: 128 LRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSEACS 184
           LRANK+Y KFSKCEFWLKK+SFLGHVVSSEGVFVDQ KIEAVTSW RPSRVSEACS
Sbjct: 413 LRANKIYTKFSKCEFWLKKVSFLGHVVSSEGVFVDQAKIEAVTSWPRPSRVSEACS 468

[Close]

BLAST of Cmc07g0188421 vs. ExPASy TrEMBL
Match: A0A5A7VBY3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00920 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 158/180 (87.78%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1    MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTA 60
            MRLCI YRELNKVTVKN YPLP+IDDLFDQLQGA VFSKIDLRSGYHQL+IRDSDIPKTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEH 120
            FRSRYGHYEF+VMSFGL NA  VF+DLMNRVFKDFLD+FVIVFIDDIL+YSKT+AEHEEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 180
            LHQVLETLRANKLYAKFSKCEFWL+K++FLGHVVSSEGV VD  KIEAVT+W RPS VSE
Sbjct: 987  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 1046

[Close]

BLAST of Cmc07g0188421 vs. ExPASy TrEMBL
Match: A0A5A7UJ81 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00550 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTA 60
           MRLCI YRELNKVTVKNHYPLP+IDDLFDQLQGA VFSKIDLRSGYHQL+IRD DIPKTA
Sbjct: 641 MRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 700

Query: 61  FRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEH 120
           FRSRYGHYEF+VMSFGL NA  VF+DLMNRVFKDFLD+FVIVFIDDIL+YSKT+AEHEEH
Sbjct: 701 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 180
           LHQVLETLRANKLYAKFSKCEFWL+K++FLGHVVSSEG  VD  KIEAVT+W RPS VSE
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGFSVDPAKIEAVTNWPRPSTVSE 820

[Close]

BLAST of Cmc07g0188421 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 158/180 (87.78%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTA 60
           MRLCI YRELNKVTVKN YPLPKIDDLFDQLQGA VFSKIDLRSGYHQL+IRD DIPKTA
Sbjct: 613 MRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 672

Query: 61  FRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEH 120
           FRSRYGHYEF+VMSFGL NA  VF+DLMNRVFKDFLD+FVIVFIDDIL+YSKT+AEHEEH
Sbjct: 673 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 732

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 180
           LHQVLETLRANKLYAKFSKCEFWL+K++FLGHVVSSEGV VD  KIEAVT+W RPS VSE
Sbjct: 733 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 792

[Close]

BLAST of Cmc07g0188421 vs. ExPASy TrEMBL
Match: A0A5A7VK60 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 158/180 (87.78%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MRLCIGYRELNKVTVKNHYPLPKIDDLFDQLQGAIVFSKIDLRSGYHQLKIRDSDIPKTA 60
           MRLCI YRELNKVT+KN YPLP+IDDLFDQLQGA VFSKIDLRSGYHQL+IRDSDIPKTA
Sbjct: 641 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FRSRYGHYEFIVMSFGLINAHVVFIDLMNRVFKDFLDTFVIVFIDDILVYSKTKAEHEEH 120
           FRSRYGHYEFIVMSFGL NA  VF+DLMNRVFKDFLD+FVIVFIDDIL+YSKT+AEHEEH
Sbjct: 701 FRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLETLRANKLYAKFSKCEFWLKKMSFLGHVVSSEGVFVDQVKIEAVTSWHRPSRVSE 180
           LHQVLETLRANKLYAKFSKCEFWLKK++FLGHVVSS+GV VD  KIEAVT+W RPS VSE
Sbjct: 761 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSDGVSVDPAKIEAVTNWPRPSTVSE 820

[Close]

BLAST of Cmc07g0188421 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.3e-06
Identity = 23/63 (36.51%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 120 HLHQVLETLRANKLYAKFSKCEFWLKKMSFLG--HVVSSEGVFVDQVKIEAVTSWHRPSR 179
           HL  VL+    ++ YA   KC F   ++++LG  H++S EGV  D  K+EA+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSE 181
            +E
Sbjct: 63  TTE 65

The following BLAST results are available for this feature:

BLAST of Cmc07g0188421 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052251.1	1.0e-88	93.75	hypothetical protein E6C27_scaffold207G00730 [Cucumis melo var. makuwa] >TYK0181...	[more]
KAA0063946.1	2.3e-85	87.78	pol protein [Cucumis melo var. makuwa]	[more]
KAA0055932.1	3.0e-85	87.22	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037397.1	3.0e-85	85.79	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ97514.1	3.0e-85	85.79	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0188421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	8.1e-33	35.75	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	8.1e-33	40.56	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	8.1e-33	40.56	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P31843	5.3e-32	52.31	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P04323	6.9e-32	36.87	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc07g0188421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BRJ5	4.9e-89	93.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VBY3	1.1e-85	87.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]
A0A5A7UJ81	1.5e-85	87.22	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5A7V4E4	1.5e-85	87.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7VK60	1.5e-85	87.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]

BLAST of Cmc07g0188421 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.3e-06	36.51	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 1.1E-62 score: 213.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..179
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..179
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..154 e-value: 1.32857E-74 score: 220.16
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 1.1E-62 score: 213.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 4..153 e-value: 6.5E-22 score: 78.1
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0188421.1	Cmc07g0188421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding