Cmc07g0188261 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0188261
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 6503985 .. 6504413 (+)
RNA-Seq Expression	Cmc07g0188261
Synteny	Cmc07g0188261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACTTTGCATTGACTATAGAGAGCTGAATAAGGTAACAGTCAAGAATGGTTATCCATTGCCCAGGATTGCCGACTTGTTTGACCAGCTGCAAGGAGCCACTATTTTCTCCAAGATCGATTTACGTTCAAGCTATCACCAGCTGAGGATTAGAGACAGCGACATCCCTAAGACTGCTTTCCATTCCAGATATGGACATTACGAGTTCATTGTAATGTCTTTTACCCTAACAAATGCTTCTGTTGTATTTATGGATCTGATGAATAGGGTGTTTAAGGATTTCTTAGACATTTTCGTTATAGTCTTTATTGATGACATCTTGGTTTACTCCAAGACAGAGGCTGAACATGAAGAGCATTTGCATCAGGTTTTGGAGACCCTTCAAGCCAATAAGTTATATGGTAAGTTTTATAAGTGCAAGTTCTAG

mRNA sequence

ATGCGACTTTGCATTGACTATAGAGAGCTGAATAAGGTAACAGTCAAGAATGGTTATCCATTGCCCAGGATTGCCGACTTGTTTGACCAGCTGCAAGGAGCCACTATTTTCTCCAAGATCGATTTACGTTCAAGCTATCACCAGCTGAGGATTAGAGACAGCGACATCCCTAAGACTGCTTTCCATTCCAGATATGGACATTACGAGTTCATTGTAATGTCTTTTACCCTAACAAATGCTTCTGTTGTATTTATGGATCTGATGAATAGGGTGTTTAAGGATTTCTTAGACATTTTCGTTATAGTCTTTATTGATGACATCTTGGTTTACTCCAAGACAGAGGCTGAACATGAAGAGCATTTGCATCAGGTTTTGGAGACCCTTCAAGCCAATAAGTTATATGGTAAGTTTTATAAGTGCAAGTTCTAG

Coding sequence (CDS)

ATGCGACTTTGCATTGACTATAGAGAGCTGAATAAGGTAACAGTCAAGAATGGTTATCCATTGCCCAGGATTGCCGACTTGTTTGACCAGCTGCAAGGAGCCACTATTTTCTCCAAGATCGATTTACGTTCAAGCTATCACCAGCTGAGGATTAGAGACAGCGACATCCCTAAGACTGCTTTCCATTCCAGATATGGACATTACGAGTTCATTGTAATGTCTTTTACCCTAACAAATGCTTCTGTTGTATTTATGGATCTGATGAATAGGGTGTTTAAGGATTTCTTAGACATTTTCGTTATAGTCTTTATTGATGACATCTTGGTTTACTCCAAGACAGAGGCTGAACATGAAGAGCATTTGCATCAGGTTTTGGAGACCCTTCAAGCCAATAAGTTATATGGTAAGTTTTATAAGTGCAAGTTCTAG

Protein sequence

MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTAFHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEHLHQVLETLQANKLYGKFYKCKF

Homology

[Close]

BLAST of Cmc07g0188261 vs. NCBI nr
Match: KAA0058812.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 2.0e-65
Identity = 125/142 (88.03%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVT+KN YPLPRI DLFDQLQGAT+FSKIDLRS YHQLRIRD DIPKTA
Sbjct: 528 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 587

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           FHSRYGHYEF+VMSF LTNA  VFMDLMNRVFKDF+D FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 588 FHSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEH 647

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           LHQVLETL+ANKLY KF KC+F
Sbjct: 648 LHQVLETLRANKLYAKFSKCEF 669

[Close]

BLAST of Cmc07g0188261 vs. NCBI nr
Match: KAA0066264.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65
Identity = 126/142 (88.73%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTVKN YPLPRI DLFDQLQGAT+FSKIDLRS YHQLRIRD DIPKTA
Sbjct: 615 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 674

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           F SRYGHYEF+VMSF LTNA  VFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 675 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDLFVIVFIDDILIYSKTEAEHEEH 734

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           LHQVLETL+ANKLY KF KC+F
Sbjct: 735 LHQVLETLRANKLYAKFSKCEF 756

[Close]

BLAST of Cmc07g0188261 vs. NCBI nr
Match: KAA0063946.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
            MRLCIDYRELNKVTVKN YPLPRI DLFDQLQGAT+FSKIDLRS YHQLRIRDSDIPKTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
            F SRYGHYEF+VMSF LTNA  VFMDLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLQANKLYGKFYKCKF 143
            LHQVLETL+ANKLY KF KC+F
Sbjct: 987  LHQVLETLRANKLYAKFSKCEF 1008

[Close]

BLAST of Cmc07g0188261 vs. NCBI nr
Match: TYK22181.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-65
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTVKN YPLPRI DLFDQLQGATIFSKIDLRS YHQLRIRDSDIP+TA
Sbjct: 402 MRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPRTA 461

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           F SRYGHYEFIVMSF LTNA  +FMDLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 462 FRSRYGHYEFIVMSFGLTNAPTIFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 521

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           LHQVLETL+ANKLY KF KC+F
Sbjct: 522 LHQVLETLRANKLYAKFSKCEF 543

[Close]

BLAST of Cmc07g0188261 vs. NCBI nr
Match: KAA0033486.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-65
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTVKN YPLPRI DLFDQLQGAT+FSKIDLRS YHQLRIRDSDIPKTA
Sbjct: 641 MRLCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           F SRYGHYEF+VMSF LTNA  VFMDLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 701 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           LHQVLETL+ANKLY KF KC+F
Sbjct: 761 LHQVLETLRANKLYAKFSKCEF 782

[Close]

BLAST of Cmc07g0188261 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-31
Identity = 70/130 (53.85%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           +R+CIDYR L KVT+KN YP+PR+ DLFD+L  AT F+K+DLRS Y Q+RI   D PKT 
Sbjct: 6   LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILV---YSKTEAEH 120
             +RYG +EF VM F LTNA   F +LMN V  ++LD FV+V++DD++V   YS +  EH
Sbjct: 66  CVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEH 125

Query: 121 EEHLHQVLET 128
            +HL  V E+
Sbjct: 126 IKHLRVVRES 135

[Close]

BLAST of Cmc07g0188261 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 65/141 (46.10%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTAF 61
           RLC+DYR LNK T+ + +PLPRI +L  ++  A IF+ +DL S YHQ+ +   D  KTAF
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  HSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEHL 121
            +  G YE+ VM F L NA   F   M   F+D    FV V++DDIL++S++  EH +HL
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLR--FVNVYLDDILIFSESPEEHWKHL 766

Query: 122 HQVLETLQANKLYGKFYKCKF 143
             VLE L+   L  K  KCKF
Sbjct: 767 DTVLERLKNENLIVKKKKCKF 785

[Close]

BLAST of Cmc07g0188261 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 65/141 (46.10%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTAF 61
           RLC+DYR LNK T+ + +PLPRI +L  ++  A IF+ +DL S YHQ+ +   D  KTAF
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  HSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEHL 121
            +  G YE+ VM F L NA   F   M   F+D    FV V++DDIL++S++  EH +HL
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLR--FVNVYLDDILIFSESPEEHWKHL 792

Query: 122 HQVLETLQANKLYGKFYKCKF 143
             VLE L+   L  K  KCKF
Sbjct: 793 DTVLERLKNENLIVKKKKCKF 811

[Close]

BLAST of Cmc07g0188261 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           +R+ +DY+ LNK    N YPLP I  L  ++QG+TIF+K+DL+S+YH +R+R  D  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           F    G +E++VM + ++ A   F   +N +  +  +  V+ ++DDIL++SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           +  VL+ L+   L     KC+F
Sbjct: 582 VKDVLQKLKNANLIINQAKCEF 603

[Close]

BLAST of Cmc07g0188261 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           +R+ +DY+ LNK    N YPLP I  L  ++QG+TIF+K+DL+S+YH +R+R  D  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           F    G +E++VM + ++ A   F   +N +  +  +  V+ ++DDIL++SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           +  VL+ L+   L     KC+F
Sbjct: 582 VKDVLQKLKNANLIINQAKCEF 603

[Close]

BLAST of Cmc07g0188261 vs. ExPASy TrEMBL
Match: A0A5A7USG7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002890 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.9e-66
Identity = 125/142 (88.03%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVT+KN YPLPRI DLFDQLQGAT+FSKIDLRS YHQLRIRD DIPKTA
Sbjct: 528 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 587

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           FHSRYGHYEF+VMSF LTNA  VFMDLMNRVFKDF+D FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 588 FHSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEH 647

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           LHQVLETL+ANKLY KF KC+F
Sbjct: 648 LHQVLETLRANKLYAKFSKCEF 669

[Close]

BLAST of Cmc07g0188261 vs. ExPASy TrEMBL
Match: A0A5A7VBY3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00920 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
            MRLCIDYRELNKVTVKN YPLPRI DLFDQLQGAT+FSKIDLRS YHQLRIRDSDIPKTA
Sbjct: 867  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61   FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
            F SRYGHYEF+VMSF LTNA  VFMDLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 927  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 986

Query: 121  LHQVLETLQANKLYGKFYKCKF 143
            LHQVLETL+ANKLY KF KC+F
Sbjct: 987  LHQVLETLRANKLYAKFSKCEF 1008

[Close]

BLAST of Cmc07g0188261 vs. ExPASy TrEMBL
Match: A0A5A7VG30 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003060 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 126/142 (88.73%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTVKN YPLPRI DLFDQLQGAT+FSKIDLRS YHQLRIRD DIPKTA
Sbjct: 615 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 674

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           F SRYGHYEF+VMSF LTNA  VFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 675 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDLFVIVFIDDILIYSKTEAEHEEH 734

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           LHQVLETL+ANKLY KF KC+F
Sbjct: 735 LHQVLETLRANKLYAKFSKCEF 756

[Close]

BLAST of Cmc07g0188261 vs. ExPASy TrEMBL
Match: A0A5D3DES2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00450 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVTVKN YPLPRI DLFDQLQGATIFSKIDLRS YHQLRIRDSDIP+TA
Sbjct: 402 MRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPRTA 461

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           F SRYGHYEFIVMSF LTNA  +FMDLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 462 FRSRYGHYEFIVMSFGLTNAPTIFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEH 521

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           LHQVLETL+ANKLY KF KC+F
Sbjct: 522 LHQVLETLRANKLYAKFSKCEF 543

[Close]

BLAST of Cmc07g0188261 vs. ExPASy TrEMBL
Match: A0A5A7VK60 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNGYPLPRIADLFDQLQGATIFSKIDLRSSYHQLRIRDSDIPKTA 60
           MRLCIDYRELNKVT+KN YPLPRI DLFDQLQGAT+FSKIDLRS YHQLRIRDSDIPKTA
Sbjct: 641 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FHSRYGHYEFIVMSFTLTNASVVFMDLMNRVFKDFLDIFVIVFIDDILVYSKTEAEHEEH 120
           F SRYGHYEFIVMSF LTNA  VFMDLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEH
Sbjct: 701 FRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121 LHQVLETLQANKLYGKFYKCKF 143
           LHQVLETL+ANKLY KF KC+F
Sbjct: 761 LHQVLETLRANKLYAKFSKCEF 782

The following BLAST results are available for this feature:

BLAST of Cmc07g0188261 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058812.1	2.0e-65	88.03	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066264.1	2.7e-65	88.73	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063946.1	2.7e-65	89.44	pol protein [Cucumis melo var. makuwa]	[more]
TYK22181.1	3.5e-65	89.44	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033486.1	3.5e-65	89.44	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0188261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	1.2e-31	53.85	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	1.1e-26	46.10	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.1e-26	46.10	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.8e-24	38.73	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.8e-24	38.73	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc07g0188261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7USG7	9.9e-66	88.03	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A5A7VBY3	1.3e-65	89.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]
A0A5A7VG30	1.3e-65	88.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5D3DES2	1.7e-65	89.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33...	[more]
A0A5A7VK60	1.7e-65	89.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]

BLAST of Cmc07g0188261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..142 e-value: 6.9E-17 score: 61.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 1.0E-55 score: 190.4
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..142
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..142
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..142 e-value: 3.61116E-66 score: 196.662
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..142 e-value: 1.0E-55 score: 190.4
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0188261.1	Cmc07g0188261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding