Cmc07g0187751 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0187751
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionSplicing factor YJU2
LocationCMiso1.1chr07: 5818056 .. 5820813 (-)
RNA-Seq ExpressionCmc07g0187751
SyntenyCmc07g0187751
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGATAAAATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCTTCCTATGAGCATCCGGTGCAATACTTGTGGTAATTACATATACAAGGGCACAAAGTTCATGTTTATGAGTTTGAAAAACTTTTTAGGATGAGATAGGTATCATGTTTATGAGTTCAATATTTCTTGATAGTAGTTAGTATATTAAATGAACATATAAATAACATATAATACAACTTATTAAATTATAAAAATATTATTATATTATTAATATTATACATATTAAACAATTAAATAACCATCATATTAAATATTAACCATAAATGTGATATTTTAGTATAATTATATATATGATAGTTGTATAATATAATAATAATACAATTATAAATATAAAATTGAATTATAATTTTTAAAGTTTTTAACCACAATTAAATTAAATTATAATTTAATTATTATAATTTAATTTAATATTAATATAATAACTTGTATGAAAATTATAGCTGATATATTTCAAATATATATTAGATATATTTAATATATATAATATATTAAATAATATACAACAATAAATAATTATATACTTAACAAATATCTATTATGTTCAGATTTATATGTTCAAACATATAAACCTATTATTATAAACGAGGATCATTAAAGATGCCTATATATTTACATAACATTTAAATATCTTTGTTTTTAATAATATTTTAATTATACTTTATAATTATAATAATATTATAATTATTATATTTGAATACTTTTTATAATAGGATATTATTTAAATATCCTATTATAATATACTATAATAACTGTAATTGTCTGTGACTATGAATTAATCACCCATCAATTAATCTAATTAATAAATTAGAATTTCTAGCTCTTGATATTATATTCAGATTAGCTGCTTCTTCGCAGTTAATCTTTCTTGTTAACACTATACATTCAATCAATCAATGCTCTTTTAACTGTTTATATTCGAATTAATCCTGCTAACATCTTCGTGACATAGAAATTTCAGTGCAGAATGTAAGGGAAAGTAGAAAGACACATTGCAATATTATGTAAGATAATATGTACTAATAATGTTATCACTTCCATAACATAATATATATATTATGTTGTATATATTATTATACAACATAATAATTATTATCAATAGATTGGGTATATTTCCAATCTATTGATATTATTATTATGTTGCTCGAATGCATTAATGGTTAATGCTCCATGTCAAGTATAATAATATATTAATTATTAATATTCTATGATCACTATCAATATAAATTATAATATCATCATATTAGAAATGTTTTATATTATAATAATATAATATCATATATAATATTAAGAAATGATACGTAATTATATTATTTCAAGTACTTCAATGAATTATATAATATTATAATTAAATATTAAAAATATAATTAATATTTTTAATTATGTGGATCAAATTGGAGGTGGTAATCACAAATATATAGTATTAATAATAGTATATAATTTTTTAAAATTATAATAATTAATATTTTGATATTAATATATTATTATCATATATTATAATAATTATAAATTAATACATATTATAATATAAAATTGTATCTTAATTATATACATAAATATTAATTAAAAGATAGTTTAATTTACAATAATATTATTATTTATCTGATGCTTTTTCTATAATATTGTATAATTTTATTATAATTTATATATATATATATATATGTATTAAATTTATTTATTATATAATATTCCTCAAATTATGGTTGAAGTACATATTACAATTATTTAATATTATATAAATTACACTTAATTTATCTATAATACAAGAACATATATAATTACTAAATTCATATTCATATTCATAATATATCTATAATACAGGCATGTTTATAGATATATTAAATATAAATAAAAGGTATAAATTAATATTAGATAAATTAAGGTTGGTTTAATCTAAATTATGATAGTTAGATTCACCATTCCTTAATTAGATCTAAAAATTGGAAGTTGAGCTGGGAATTTGTCCAACTAAGTGTAAATCGAATTCGACCTCGACTTTGGGTAAGTTAAATCAACTGGATTTTTGGATCCTTAATCAACTGCGAGTTAAGTTTTTGAACTGAGTAAATTGCCCTTACTGTTTATGATTTATTTTTTGGAAGCTTGACCTTACTGTTAGGATTAATATAATTAATGATATAATATGGATATCATTAATTATAATATTATACGATCACATTGTATATTATGCCTTATAAATGCTAGTATCCATTTATATGCATTATATATAATTATAATTATAATTATATGTGTTCATATAATTATAATTATACGTATATTATAATTATATTATAATATTAGCCATTTATGATACCAATGATTATCTGTATATTAATATTATAAATAACGAGTAACTGTTTATTAATATTAAATATATAATTATTATCAACTTAGTTCAATATTATATGAACACATACGAATTAGGTCGGTTTGAACGAGGGTTCTCGGGTCGGCTTGCAAGATGGGAAATCCGCGACTGTTGGAGGTTCGCCGTCAGCTGCTCGGCGAACGACGCGGCGGATGGCGGCTGGACGTCGGCAGACGCGGTCAAACGAAGGACGCACGGTGGCGTCCGGTTACGTGAAACCGAGAGGAAGGTCGGGAAAAGACGGGACCGCGGCGGAAACATGTAATACCATTAATTGA

mRNA sequence

GAGATAAAATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTCGGTTTGAACGAGGGTTCTCGGGTCGGCTTGCAAGATGGGAAATCCGCGACTGTTGGAGGTTCGCCGTCAGCTGCTCGGCGAACGACGCGGCGGATGGCGGCTGGACGTCGGCAGACGCGGTCAAACGAAGGACGCACGGTGGCGTCCGGTTACGTGAAACCGAGAGGAAGGTCGGGAAAAGACGGGACCGCGGCGGAAACATGTAATACCATTAATTGA

Coding sequence (CDS)

ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTCGGTTTGAACGAGGGTTCTCGGGTCGGCTTGCAAGATGGGAAATCCGCGACTGTTGGAGGTTCGCCGTCAGCTGCTCGGCGAACGACGCGGCGGATGGCGGCTGGACGTCGGCAGACGCGGTCAAACGAAGGACGCACGGTGGCGTCCGGTTACGTGAAACCGAGAGGAAGGTCGGGAAAAGACGGGACCGCGGCGGAAACATGTAATACCATTAATTGA

Protein sequence

MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVGLNEGSRVGLQDGKSATVGGSPSAARRTTRRMAAGRRQTRSNEGRTVASGYVKPRGRSGKDGTAAETCNTIN
Homology
[Close]
BLAST of Cmc07g0187751 vs. NCBI nr
Match: KAA0060823.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-18
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 32  KVGLNEGSRVGLQDGKSATVGGSPSAARRTTRRMAAGRRQTRSNEGRTVASGYVKPRGRS 91
           +VGL+EGSRVGLQDGKSATVGG PSAARRTTRRMAAGRRQTRS+E RT A GYV+ RGRS
Sbjct: 95  QVGLDEGSRVGLQDGKSATVGGLPSAARRTTRRMAAGRRQTRSDERRTTAFGYVRSRGRS 154

Query: 92  GKDGTAAE 100
           GKD TA +
Sbjct: 155 GKDETATD 162

[Close]
BLAST of Cmc07g0187751 vs. NCBI nr
Match: XP_022761494.1 (coiled-coil domain-containing protein 94 isoform X4 [Durio zibethinus])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 33

[Close]
BLAST of Cmc07g0187751 vs. NCBI nr
Match: XP_016714091.2 (splicing factor YJU2 [Gossypium hirsutum] >KAG4209853.1 hypothetical protein ERO13_A02G008200v2 [Gossypium hirsutum])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 33

[Close]
BLAST of Cmc07g0187751 vs. NCBI nr
Match: KAG6652701.1 (hypothetical protein CIPAW_05G024500 [Carya illinoinensis])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 33

[Close]
BLAST of Cmc07g0187751 vs. NCBI nr
Match: XP_022761492.1 (coiled-coil domain-containing protein 94 homolog isoform X2 [Durio zibethinus])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 33

[Close]
BLAST of Cmc07g0187751 vs. ExPASy Swiss-Prot
Match: A8WHR3 (Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVGL 36
          M ERKVLNKYYPPDFDPSK+P+++ PK++Q  V L
Sbjct: 1  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRL 35

[Close]
BLAST of Cmc07g0187751 vs. ExPASy Swiss-Prot
Match: Q9BW85 (Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVGL 36
          M ERKVLNKYYPPDFDPSK+P+++ PK++Q  V L
Sbjct: 1  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRL 35

[Close]
BLAST of Cmc07g0187751 vs. ExPASy Swiss-Prot
Match: Q9D6J3 (Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVGL 36
          M ERKVLNKYYPPDFDPSK+P+++ PK++Q  V L
Sbjct: 1  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRL 35

[Close]
BLAST of Cmc07g0187751 vs. ExPASy Swiss-Prot
Match: Q54WR5 (Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.4e-04
Identity = 17/24 (70.83%), Postives = 23/24 (95.83%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVR 25
          MGERKV++KYYPPDFDPSK+ +++
Sbjct: 1  MGERKVISKYYPPDFDPSKVAKIK 24

[Close]
BLAST of Cmc07g0187751 vs. ExPASy TrEMBL
Match: A0A5A7UXY3 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00490 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 32  KVGLNEGSRVGLQDGKSATVGGSPSAARRTTRRMAAGRRQTRSNEGRTVASGYVKPRGRS 91
           +VGL+EGSRVGLQDGKSATVGG PSAARRTTRRMAAGRRQTRS+E RT A GYV+ RGRS
Sbjct: 95  QVGLDEGSRVGLQDGKSATVGGLPSAARRTTRRMAAGRRQTRSDERRTTAFGYVRSRGRS 154

Query: 92  GKDGTAAE 100
           GKD TA +
Sbjct: 155 GKDETATD 162

[Close]
BLAST of Cmc07g0187751 vs. ExPASy TrEMBL
Match: A0A0B0MV50 (Splicing factor YJU2 OS=Gossypium arboreum OX=29729 GN=LOC108474488 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 33

[Close]
BLAST of Cmc07g0187751 vs. ExPASy TrEMBL
Match: A0A6P9EB24 (Splicing factor YJU2 OS=Juglans regia OX=51240 GN=LOC109011793 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 33

[Close]
BLAST of Cmc07g0187751 vs. ExPASy TrEMBL
Match: A0A6P9ED46 (Splicing factor YJU2 OS=Juglans regia OX=51240 GN=LOC118348244 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 33

[Close]
BLAST of Cmc07g0187751 vs. ExPASy TrEMBL
Match: A0A6J1AVA5 (Splicing factor YJU2 OS=Herrania umbratica OX=108875 GN=LOC110421628 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 33

[Close]
BLAST of Cmc07g0187751 vs. TAIR 10
Match: AT1G17130.1 (Family of unknown function (DUF572) )

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KV
Sbjct: 1  MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKV 33

[Close]
BLAST of Cmc07g0187751 vs. TAIR 10
Match: AT1G17130.2 (Family of unknown function (DUF572) )

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KV
Sbjct: 1  MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKV 33

[Close]
BLAST of Cmc07g0187751 vs. TAIR 10
Match: AT2G32050.1 (Family of unknown function (DUF572) )

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-10
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERK LNKYYPP+FDP ++PR+R+PKNQQ K+
Sbjct: 1  MGERKGLNKYYPPNFDPKQIPRIRKPKNQQRKI 33

[Close]
BLAST of Cmc07g0187751 vs. TAIR 10
Match: AT3G43250.1 (Family of unknown function (DUF572) )

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-09
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKV 34
          MGERK LNKYYPPDFDP K+ R+++PKNQQ K+
Sbjct: 1  MGERKNLNKYYPPDFDPKKIHRIKKPKNQQKKI 33

The following BLAST results are available for this feature:
BLAST of Cmc07g0187751 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060823.13.1e-1882.35NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
XP_022761494.11.5e-09100.00coiled-coil domain-containing protein 94 isoform X4 [Durio zibethinus][more]
XP_016714091.21.5e-09100.00splicing factor YJU2 [Gossypium hirsutum] >KAG4209853.1 hypothetical protein ERO... [more]
KAG6652701.11.5e-09100.00hypothetical protein CIPAW_05G024500 [Carya illinoinensis][more]
XP_022761492.11.5e-09100.00coiled-coil domain-containing protein 94 homolog isoform X2 [Durio zibethinus][more]
BLAST of Cmc07g0187751 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A8WHR32.5e-0768.57Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1[more]
Q9BW852.5e-0768.57Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1[more]
Q9D6J32.5e-0768.57Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1[more]
Q54WR53.4e-0470.83Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1[more]
BLAST of Cmc07g0187751 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UXY31.5e-1882.35NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A0B0MV507.4e-10100.00Splicing factor YJU2 OS=Gossypium arboreum OX=29729 GN=LOC108474488 PE=3 SV=1[more]
A0A6P9EB247.4e-10100.00Splicing factor YJU2 OS=Juglans regia OX=51240 GN=LOC109011793 PE=3 SV=1[more]
A0A6P9ED467.4e-10100.00Splicing factor YJU2 OS=Juglans regia OX=51240 GN=LOC118348244 PE=3 SV=1[more]
A0A6J1AVA57.4e-10100.00Splicing factor YJU2 OS=Herrania umbratica OX=108875 GN=LOC110421628 PE=3 SV=1[more]
BLAST of Cmc07g0187751 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G17130.11.7e-1187.88Family of unknown function (DUF572) [more]
AT1G17130.21.7e-1187.88Family of unknown function (DUF572) [more]
AT2G32050.19.6e-1072.73Family of unknown function (DUF572) [more]
AT3G43250.12.1e-0972.73Family of unknown function (DUF572) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007590Saf4/Yju2 proteinPFAMPF04502DUF572coord: 9..33
e-value: 3.3E-7
score: 30.2
IPR007590Saf4/Yju2 proteinPANTHERPTHR12111SPLICING FACTOR YJU2coord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..105
NoneNo IPR availablePANTHERPTHR12111:SF7BNAA02G14200D PROTEINcoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0187751.1Cmc07g0187751.1mRNA