Cmc07g0186691 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0186691
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description30S ribosomal protein S11, chloroplastic
LocationCMiso1.1chr07: 4631995 .. 4632195 (-)
RNA-Seq ExpressionCmc07g0186691
SyntenyCmc07g0186691
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGGGTAATTTCTTGGTCCTTTGCCGGTACGTGTGGAATCAAAAGTACAAGAAAAGGGACACCATTTGCGGCTCAAATCGCAACAGGATATGCTATTCGAGCAGTAGTGGATCAAGGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTTGGTCTCAGAAGAGATGCAACATTAAGAGCTATTCCAAGAAGTTGA

mRNA sequence

ATGGGTCGGGTAATTTCTTGGTCCTTTGCCGGTACGTGTGGAATCAAAAGTACAAGAAAAGGGACACCATTTGCGGCTCAAATCGCAACAGGATATGCTATTCGAGCAGTAGTGGATCAAGGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTTGGTCTCAGAAGAGATGCAACATTAAGAGCTATTCCAAGAAGTTGA

Coding sequence (CDS)

ATGGGTCGGGTAATTTCTTGGTCCTTTGCCGGTACGTGTGGAATCAAAAGTACAAGAAAAGGGACACCATTTGCGGCTCAAATCGCAACAGGATATGCTATTCGAGCAGTAGTGGATCAAGGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTTGGTCTCAGAAGAGATGCAACATTAAGAGCTATTCCAAGAAGTTGA

Protein sequence

MGRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLRAIPRS
Homology
[Close]
BLAST of Cmc07g0186691 vs. NCBI nr
Match: TYH97719.1 (hypothetical protein ES332_A12G260900v1 [Gossypium tomentosum])

HSP 1 Score: 107.1 bits (266), Expect = 6.0e-20
Identity = 55/65 (84.62%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWSFAGTCG K TR+GTPFAAQ A G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSFAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. NCBI nr
Match: YP_009993714.1 (ribosomal protein S11 [Phaleria macrocarpa] >QNO35464.1 ribosomal protein S11 [Phaleria macrocarpa])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG + TR+GTPFAAQIA G AIR VVDQGMQRAEVMIKGLGL RDA LR
Sbjct: 48  GRVISWSSAGTCGFRGTRRGTPFAAQIAAGNAIRTVVDQGMQRAEVMIKGLGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. NCBI nr
Match: YP_010017027.1 (ribosomal protein S11 [Sterculia monosperma] >YP_010039498.1 ribosomal protein S11 [Sterculia lanceolata] >QOJ45770.1 ribosomal protein S11 [Sterculia monosperma] >QOY45824.1 ribosomal protein S11 [Sterculia lanceolata] >QOY45907.1 ribosomal protein S11 [Sterculia monosperma])

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG K TR+GTPFAAQ A G+AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFKGTRRGTPFAAQTAAGHAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. NCBI nr
Match: YP_009650502.1 (ribosomal protein S11 [Stellera chamaejasme] >YP_009679721.1 ribosomal protein S11 [Daphne giraldii] >QOJ46119.1 ribosomal protein S11 [Stellera chamaejasme f. chrysantha] >QSQ86704.1 ribosomal protein S11 [Wikstroemia canescens] >QSQ86882.1 ribosomal protein S11 [Wikstroemia alternifolia] >QCF39776.1 ribosomal protein S11 [Stellera chamaejasme] >QDP70037.1 ribosomal protein S11 [Daphne giraldii])

HSP 1 Score: 104.8 bits (260), Expect = 3.0e-19
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG + TR+GTPFAAQIA G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFRGTRRGTPFAAQIAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. NCBI nr
Match: YP_009663853.1 (ribosomal protein S11 [Daphne tangutica] >YP_010129297.1 30S ribosomal protein S11 [Daphne acutiloba] >YP_010129554.1 30S ribosomal protein S11 [Daphne feddei] >YP_010151088.1 ribosomal protein S11 [Daphne retusa] >YP_010151179.1 ribosomal protein S11 [Daphne depauperata] >QCW07886.1 ribosomal protein S11 [Daphne tangutica] >QPZ48523.1 30S ribosomal protein S11 [Daphne acutiloba] >QPZ48863.1 30S ribosomal protein S11 [Daphne feddei] >QPZ49113.1 30S ribosomal protein S11 [Daphne acutiloba] >QPZ49370.1 30S ribosomal protein S11 [Daphne feddei])

HSP 1 Score: 104.8 bits (260), Expect = 3.0e-19
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG + TR+GTPFAAQIA G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFRGTRRGTPFAAQIAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.7e-22
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG K TR+GTPFAAQ A G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy Swiss-Prot
Match: Q2L937 (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.7e-22
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG K TR+GTPFAAQ A G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy Swiss-Prot
Match: Q6EW19 (30S ribosomal protein S11, chloroplastic OS=Nymphaea alba OX=34301 GN=rps11 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 8.7e-22
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRV+SWS AGTCG K TR+GTPFAAQ A G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy Swiss-Prot
Match: B1A968 (30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-21
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG + TR+GTPFAAQ A G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy Swiss-Prot
Match: Q4VZK2 (30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-21
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG K TR+GTPFAAQ A G AIR VVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy TrEMBL
Match: A0A5D2N4W1 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A12G260900v1 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.9e-20
Identity = 55/65 (84.62%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWSFAGTCG K TR+GTPFAAQ A G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSFAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy TrEMBL
Match: A0A7G9XJA6 (30S ribosomal protein S11, chloroplastic OS=Phaleria macrocarpa OX=223762 GN=rps11 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.5e-20
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG + TR+GTPFAAQIA G AIR VVDQGMQRAEVMIKGLGL RDA LR
Sbjct: 48  GRVISWSSAGTCGFRGTRRGTPFAAQIAAGNAIRTVVDQGMQRAEVMIKGLGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy TrEMBL
Match: A0A7L9CVM2 (30S ribosomal protein S11, chloroplastic OS=Sterculia monosperma OX=1679389 GN=rps11 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.5e-20
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG K TR+GTPFAAQ A G+AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFKGTRRGTPFAAQTAAGHAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy TrEMBL
Match: A0A7T3U2S3 (30S ribosomal protein S11 OS=Daphne acutiloba OX=2753872 GN=rps11 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG + TR+GTPFAAQIA G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFRGTRRGTPFAAQIAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. ExPASy TrEMBL
Match: A0A7T3P9C0 (30S ribosomal protein S11 OS=Daphne feddei OX=2753873 GN=rps11 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG + TR+GTPFAAQIA G AIRAVVDQGMQRAEVMIKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFRGTRRGTPFAAQIAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

[Close]
BLAST of Cmc07g0186691 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-22
Identity = 52/65 (80.00%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 2   GRVISWSFAGTCGIKSTRKGTPFAAQIATGYAIRAVVDQGMQRAEVMIKGLGLRRDATLR 61
           GRVISWS AGTCG + TR+GTPFAAQ A G AIRAVVDQGMQRAEV IKG GL RDA LR
Sbjct: 48  GRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALR 107

Query: 62  AIPRS 67
           AI RS
Sbjct: 108 AIRRS 112

The following BLAST results are available for this feature:
BLAST of Cmc07g0186691 vs. NCBI nr
Match NameE-valueIdentityDescription
TYH97719.16.0e-2084.62hypothetical protein ES332_A12G260900v1 [Gossypium tomentosum][more]
YP_009993714.11.3e-1983.08ribosomal protein S11 [Phaleria macrocarpa] >QNO35464.1 ribosomal protein S11 [P... [more]
YP_010017027.11.8e-1983.08ribosomal protein S11 [Sterculia monosperma] >YP_010039498.1 ribosomal protein S... [more]
YP_009650502.13.0e-1983.08ribosomal protein S11 [Stellera chamaejasme] >YP_009679721.1 ribosomal protein S... [more]
YP_009663853.13.0e-1983.08ribosomal protein S11 [Daphne tangutica] >YP_010129297.1 30S ribosomal protein S... [more]
BLAST of Cmc07g0186691 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0ZZ686.7e-2283.0830S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1... [more]
Q2L9376.7e-2283.0830S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 ... [more]
Q6EW198.7e-2281.5430S ribosomal protein S11, chloroplastic OS=Nymphaea alba OX=34301 GN=rps11 PE=3... [more]
B1A9681.5e-2181.5430S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 ... [more]
Q4VZK21.9e-2181.5430S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=... [more]
BLAST of Cmc07g0186691 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D2N4W12.9e-2084.62Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A12G260900v1 P... [more]
A0A7G9XJA66.5e-2083.0830S ribosomal protein S11, chloroplastic OS=Phaleria macrocarpa OX=223762 GN=rps... [more]
A0A7L9CVM28.5e-2083.0830S ribosomal protein S11, chloroplastic OS=Sterculia monosperma OX=1679389 GN=r... [more]
A0A7T3U2S31.4e-1983.0830S ribosomal protein S11 OS=Daphne acutiloba OX=2753872 GN=rps11 PE=4 SV=1[more]
A0A7T3P9C01.4e-1983.0830S ribosomal protein S11 OS=Daphne feddei OX=2753873 GN=rps11 PE=4 SV=1[more]
BLAST of Cmc07g0186691 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00750.15.2e-2280.00ribosomal protein S11 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 2..66
e-value: 8.3E-18
score: 64.8
IPR001971Ribosomal protein S11PANTHERPTHR1175940S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11coord: 2..66
IPR036967Ribosomal protein S11 superfamilyGENE3D3.30.420.80Ribosomal protein S11coord: 1..66
e-value: 2.5E-14
score: 55.5
NoneNo IPR availablePANTHERPTHR11759:SF4930S RIBOSOMAL PROTEIN S11, CHLOROPLASTICcoord: 2..66
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 2..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0186691.1Cmc07g0186691.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome