Cmc07g0186471 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0186471
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit beta''
Location	CMiso1.1chr07: 4395171 .. 4395389 (+)
RNA-Seq Expression	Cmc07g0186471
Synteny	Cmc07g0186471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATATACATCACACATCCTAGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGA

mRNA sequence

ATGGCATATACATCACACATCCTAGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGA

Coding sequence (CDS)

ATGGCATATACATCACACATCCTAGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGA

Protein sequence

MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

Homology

[Close]

BLAST of Cmc07g0186471 vs. NCBI nr
Match: YP_004841773.1 (RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA polymerase beta'' subunit [Cucumis melo subsp. agrestis] >ASY96578.1 RNA polymerase beta'' subunit [Cucumis melo var. conomon] >ASY96665.1 RNA polymerase beta'' subunit [Cucumis melo var. makuwa] >ASY96839.1 RNA polymerase beta'' subunit [Cucumis melo var. dudaim] >ASY97100.1 RNA polymerase beta'' subunit [Cucumis melo var. inodorus] >AEM76882.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 36  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 95

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 96  HAVEKLRQSIEI 107

[Close]

BLAST of Cmc07g0186471 vs. NCBI nr
Match: AUF34037.1 (RpoC2 [Mastixia caudatilimba])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 36  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 95

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 96  HAVEKLRQSIEI 107

[Close]

BLAST of Cmc07g0186471 vs. NCBI nr
Match: APW82621.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 36  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 95

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 96  HAVEKLRQSIEI 107

[Close]

BLAST of Cmc07g0186471 vs. NCBI nr
Match: QJF46373.1 (RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' subunit [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 32  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 91

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 92  HAVEKLRQSIEI 103

[Close]

BLAST of Cmc07g0186471 vs. NCBI nr
Match: QJR52946.1 (RNA polymerase beta'' subunit [Herpetospermum pedunculosum])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 32  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 91

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 92  HAVEKLRQSIEI 103

[Close]

BLAST of Cmc07g0186471 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-33
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 36  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 95

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 96  HAVEKLRQSIEI 107

[Close]

BLAST of Cmc07g0186471 vs. ExPASy Swiss-Prot
Match: P11704 (DNA-directed RNA polymerase subunit beta'' OS=Spinacia oleracea OX=3562 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-33
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 36  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 95

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 96  HAVEKLRQSIEI 107

[Close]

BLAST of Cmc07g0186471 vs. ExPASy Swiss-Prot
Match: Q09FX1 (DNA-directed RNA polymerase subunit beta'' OS=Nandina domestica OX=41776 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.1e-33
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 32  MAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 91

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 92  HAVEKLRQSIEI 103

[Close]

BLAST of Cmc07g0186471 vs. ExPASy Swiss-Prot
Match: A4QJA5 (DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium OX=434059 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.4e-33
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 32  MAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 91

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 92  HAVEKLRQSIEI 103

[Close]

BLAST of Cmc07g0186471 vs. ExPASy Swiss-Prot
Match: A4QJI9 (DNA-directed RNA polymerase subunit beta'' OS=Aethionema grandiflorum OX=72657 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.4e-33
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 32  MAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 91

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 92  HAVEKLRQSIEI 103

[Close]

BLAST of Cmc07g0186471 vs. ExPASy TrEMBL
Match: A0A218KG46 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.9e-31
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 32  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 91

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 92  HAVEKLRQSIEI 103

[Close]

BLAST of Cmc07g0186471 vs. ExPASy TrEMBL
Match: A0A1X9Q1J9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.9e-31
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 36  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 95

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 96  HAVEKLRQSIEI 107

[Close]

BLAST of Cmc07g0186471 vs. ExPASy TrEMBL
Match: A0A249RZW9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.9e-31
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 36  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 95

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 96  HAVEKLRQSIEI 107

[Close]

BLAST of Cmc07g0186471 vs. ExPASy TrEMBL
Match: A0A1P8LFL6 (DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.9e-31
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 36  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 95

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 96  HAVEKLRQSIEI 107

[Close]

BLAST of Cmc07g0186471 vs. ExPASy TrEMBL
Match: A0A249RXP5 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.9e-31
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNV
Sbjct: 36  MAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 95

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 96  HAVEKLRQSIEI 107

[Close]

BLAST of Cmc07g0186471 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 138.7 bits (348), Expect = 1.9e-33
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNV 60
           MAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQS ILEKHHHYGNV
Sbjct: 32  MAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSWILEKHHHYGNV 91

Query: 61  HAVEKLRQSIEI 73
           HAVEKLRQSIEI
Sbjct: 92  HAVEKLRQSIEI 103

The following BLAST results are available for this feature:

BLAST of Cmc07g0186471 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841773.1	1.8e-30	98.61	RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA pol...	[more]
AUF34037.1	1.8e-30	98.61	RpoC2 [Mastixia caudatilimba]	[more]
APW82621.1	1.8e-30	98.61	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]
QJF46373.1	1.8e-30	98.61	RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' s...	[more]
QJR52946.1	1.8e-30	98.61	RNA polymerase beta'' subunit [Herpetospermum pedunculosum]	[more]

BLAST of Cmc07g0186471 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	2.4e-33	98.61	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
P11704	2.4e-33	98.61	DNA-directed RNA polymerase subunit beta'' OS=Spinacia oleracea OX=3562 GN=rpoC2...	[more]
Q09FX1	4.1e-33	97.22	DNA-directed RNA polymerase subunit beta'' OS=Nandina domestica OX=41776 GN=rpoC...	[more]
A4QJA5	5.4e-33	97.22	DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium OX=434059 G...	[more]
A4QJI9	5.4e-33	97.22	DNA-directed RNA polymerase subunit beta'' OS=Aethionema grandiflorum OX=72657 G...	[more]

BLAST of Cmc07g0186471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG46	8.9e-31	98.61	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus var. hardwickii OX...	[more]
A0A1X9Q1J9	8.9e-31	98.61	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
A0A249RZW9	8.9e-31	98.61	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX...	[more]
A0A1P8LFL6	8.9e-31	98.61	DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 S...	[more]
A0A249RXP5	8.9e-31	98.61	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=21...	[more]

BLAST of Cmc07g0186471 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	1.9e-33	95.83	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 1..30 e-value: 3.7E-5 score: 25.8
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..71
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 1..71
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 3..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0186471.1	Cmc07g0186471.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000428	DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding