Cmc07g0185251 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0185251
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 3324354 .. 3324704 (-)
RNA-Seq Expression	Cmc07g0185251
Synteny	Cmc07g0185251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTCCACTTTGAACGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAACAAAGGAAGTAGTATGGCTTAAAAAGTTCTTAACCGATTTGGAAGTTGTTCCAAATATGCATTTGCCAATCACCTTGTATTGTGACAACAGTGGTGCAGTTGCAAATTCGCGAGAACCTAGAAGTCACAAACGTGGAAAGCACATTGAATGA

mRNA sequence

ATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTCCACTTTGAACGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAACAAAGGAAGTAGTATGGCTTAAAAAGTTCTTAACCGATTTGGAAGTTGTTCCAAATATGCATTTGCCAATCACCTTGTATTGTGACAACAGTGGTGCAGTTGCAAATTCGCGAGAACCTAGAAGTCACAAACGTGGAAAGCACATTGAATGA

Coding sequence (CDS)

ATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTCCACTTTGAACGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAACAAAGGAAGTAGTATGGCTTAAAAAGTTCTTAACCGATTTGGAAGTTGTTCCAAATATGCATTTGCCAATCACCTTGTATTGTGACAACAGTGGTGCAGTTGCAAATTCGCGAGAACCTAGAAGTCACAAACGTGGAAAGCACATTGAATGA

Protein sequence

MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE

Homology

[Close]

BLAST of Cmc07g0185251 vs. NCBI nr
Match: KAA0066714.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27862.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
           MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY
Sbjct: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60

Query: 61  VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
           VAACEA KEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE
Sbjct: 61  VAACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 116

[Close]

BLAST of Cmc07g0185251 vs. NCBI nr
Match: KAA0059674.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] >TYK26113.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
           MLVYGSKDLILTGYTDSDFQTDKD+RKSTSGSV TLNGGAVVWR+IKQSCIADSTMEAE+
Sbjct: 356 MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRNIKQSCIADSTMEAEF 415

Query: 61  VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
           + ACEA KE VWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE
Sbjct: 416 IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 471

[Close]

BLAST of Cmc07g0185251 vs. NCBI nr
Match: TYK06386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 110/116 (94.83%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
           MLVYGSKDLIL GYTDSDFQTDKDARKSTSGSV TLNGGAVVWRSIKQSCIADSTME EY
Sbjct: 210 MLVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEY 269

Query: 61  VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
           VAACEA KE VWLKKFLTDLE VPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE
Sbjct: 270 VAACEAAKEAVWLKKFLTDLEGVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 325

[Close]

BLAST of Cmc07g0185251 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 107/116 (92.24%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1    MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
            MLVYG+KDLILTGYTDSDFQ+DKDARKSTSGSV TLNGGAVVWRS+KQ+CIADSTMEAEY
Sbjct: 1158 MLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEY 1217

Query: 61   VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
            VAACEA KE VWL+KFLTDLEVVPNMHLPITLYCDNSGAVANS+EPRSHKRGKHIE
Sbjct: 1218 VAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHKRGKHIE 1273

[Close]

BLAST of Cmc07g0185251 vs. NCBI nr
Match: KAA0041899.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] >TYK17833.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 108/116 (93.10%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
           MLVYGSKDLILTGYTDSDFQTDKDARKSTSGS+ TLNGGAV+WRSIKQSCIA+STMEAEY
Sbjct: 293 MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSIFTLNGGAVIWRSIKQSCIANSTMEAEY 352

Query: 61  VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
           VA CEA KE VWLKKF TDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE
Sbjct: 353 VATCEAAKEAVWLKKFSTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 408

[Close]

BLAST of Cmc07g0185251 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-21
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 2    LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYV 61
            L +G  D IL GYTD+D   D D RKS++G + T +GGA+ W+S  Q C+A ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 62   AACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
            AA E  KE++WLK+FL +L +    ++   +YCD+  A+  S+    H R KHI+
Sbjct: 1226 AATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHARTKHID 1277

[Close]

BLAST of Cmc07g0185251 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 11   LTGYTDSDFQTDKDARKSTSGSV-STLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKE 70
            + GY DSD+   +  RKST+G +    +   + W + +Q+ +A S+ EAEY+A  EA +E
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 71   VVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
             +WLK  LT + +   +  PI +Y DN G ++ +  P  HKR KHI+
Sbjct: 1308 ALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHID 1352

[Close]

BLAST of Cmc07g0185251 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-11
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 11  LTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEV 70
           L GY+D+D+  D ++R+STSG +  LNGG V WRS KQ  +A S+ E EY+A  EAT+E 
Sbjct: 71  LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

Query: 71  VWL 74
           VWL
Sbjct: 131 VWL 133

[Close]

BLAST of Cmc07g0185251 vs. ExPASy TrEMBL
Match: A0A5A7VHA0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00410 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.2e-58
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
           MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY
Sbjct: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60

Query: 61  VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
           VAACEA KEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE
Sbjct: 61  VAACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 116

[Close]

BLAST of Cmc07g0185251 vs. ExPASy TrEMBL
Match: A0A5A7UX57 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00250 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.9e-55
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
           MLVYGSKDLILTGYTDSDFQTDKD+RKSTSGSV TLNGGAVVWR+IKQSCIADSTMEAE+
Sbjct: 356 MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRNIKQSCIADSTMEAEF 415

Query: 61  VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
           + ACEA KE VWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE
Sbjct: 416 IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 471

[Close]

BLAST of Cmc07g0185251 vs. ExPASy TrEMBL
Match: A0A5A7TKJ0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00900 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.4e-55
Identity = 108/116 (93.10%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
           MLVYGSKDLILTGYTDSDFQTDKDARKSTSGS+ TLNGGAV+WRSIKQSCIA+STMEAEY
Sbjct: 293 MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSIFTLNGGAVIWRSIKQSCIANSTMEAEY 352

Query: 61  VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
           VA CEA KE VWLKKF TDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE
Sbjct: 353 VATCEAAKEAVWLKKFSTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 408

[Close]

BLAST of Cmc07g0185251 vs. ExPASy TrEMBL
Match: A0A5D3C7T2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00810 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.4e-55
Identity = 110/116 (94.83%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
           MLVYGSKDLIL GYTDSDFQTDKDARKSTSGSV TLNGGAVVWRSIKQSCIADSTME EY
Sbjct: 210 MLVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEY 269

Query: 61  VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
           VAACEA KE VWLKKFLTDLE VPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE
Sbjct: 270 VAACEAAKEAVWLKKFLTDLEGVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 325

[Close]

BLAST of Cmc07g0185251 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.4e-55
Identity = 107/116 (92.24%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1    MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 60
            MLVYG+KDLILTGYTDSDFQ+DKDARKSTSGSV TLNGGAVVWRS+KQ+CIADSTMEAEY
Sbjct: 1158 MLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEY 1217

Query: 61   VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
            VAACEA KE VWL+KFLTDLEVVPNMHLPITLYCDNSGAVANS+EPRSHKRGKHIE
Sbjct: 1218 VAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHKRGKHIE 1273

[Close]

BLAST of Cmc07g0185251 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 2   LVYGSK-DLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEY 61
           L Y S+ ++ L  ++D+ FQ+ KD R+ST+G    L    + W+S KQ  ++ S+ EAEY
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491

Query: 62  VAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIE 117
            A   AT E++WL +F  +L++   +  P  L+CDN+ A+  +     H+R KHIE
Sbjct: 492 RALSFATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIE 545

The following BLAST results are available for this feature:

BLAST of Cmc07g0185251 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066714.1	1.3e-57	99.14	gag/pol protein [Cucumis melo var. makuwa] >TYK27862.1 gag/pol protein [Cucumis ...	[more]
KAA0059674.1	1.0e-54	93.10	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
TYK06386.1	1.7e-54	94.83	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	1.7e-54	92.24	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0041899.1	1.7e-54	93.10	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc07g0185251 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.4e-21	45.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-13	37.38	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	9.3e-11	53.97	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc07g0185251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHA0	6.2e-58	99.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G0041...	[more]
A0A5A7UX57	4.9e-55	93.10	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5A7TKJ0	8.4e-55	93.10	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5D3C7T2	8.4e-55	94.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G0081...	[more]
E2GK51	8.4e-55	92.24	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]

BLAST of Cmc07g0185251 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.1e-14	37.07	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 25..116
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 25..116
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 12..116 e-value: 3.73994E-50 score: 153.778

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0185251.1	Cmc07g0185251.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding