Cmc07g0185091 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0185091
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionchloroplastic NIFS-like cysteine desulfurase
LocationCMiso1.1chr07: 3129740 .. 3130735 (+)
RNA-Seq ExpressionCmc07g0185091
SyntenyCmc07g0185091
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGCTTAGCACATCATTTTGGGGAAAAAGTGCTTGTAGATGCGTGCTAGAGTGTTCTACATATAGTTGTCGACATCTAGGCACTTGATGCTGACTTTCTTGTTGCTTCTTCTCACAAGGTTAGGTTGTTTTCTTATTAATTAAATGGCAAGCCTTACATTTGGGCATATGAAGATAAGGAATAAACGTGCTTAAGATGTGTGGGCCTACAGGCATTGGATTCTTGTAGATTGATCTATTGTTTGCAATGCCTCCATTCTTAGGTATGTCCTTTGAGAAGATAAGTTATGAAATTAAAATTGCATCAGTTCGTTTTTAGGAAGTCAGTATCTAATTTTCATATTTGGTCCTACATGGCTCTAGATGGTGGAGATTTCTTGACCATTCCACATTTGCACAACCTCGTTCCAGGTTAGTGGACTCCATGGTTGCAATTTTGTCCTTTTCTTTTTACTTTAAAATGAAATTTTTCTCAATGTATTTATTTTATATGATGTGGAAAAATTAAAACGTTCAATATATAGGGCTCAAGAATTGCAAGAGACCTAAATAACTGTCGTTTAGCATTATTTGTTTGCTCATTTGTTCTCATAATAATTGACAATTGATAAATAATCTTTTTGAAGTCATTATGAGATTTAAATAGATGACTTCTTGAATGGTGCTAACATTTTGTGATGTCTATTTTATTCGAACTATTCATTAATTGATGCCTTTTTACATATCCTTTCATCTCTTCTATGTGATCTCTTCCTACCCAAATGCCTTTTGATATTTGCATTAAGAAGTCTTTTTGGTGGACAATATTGTCCTCAATTCTACTAATTACTCATATCCCCCTTCGTTAGATTTGAAGCTGGGACGCCTACAATTGGAGAAGCAATTGGTTTGGGGAGCTGCTATTGATTATTTATCTAGGATCGAAATGCAAAAAATTCATAGTTACGAAGTGAGTTGATTGAAATTTGGTATATACCCTTTGTTTGAGAATTTTTG

mRNA sequence

TTGGCTTAGCACATCATTTTGGGGAAAAAGTGCTTGTAGATGCGTGCTAGAGTGTTCTACATATAGTTGTCGACATCTAGGCACTTGATGCTGACTTTCTTGTTGCTTCTTCTCACAAGGTTAGGTTGTTTTCTTATTAATTAAATGGCAAGCCTTACATTTGGGCATATGAAGATAAGGAATAAACGTGCTTAAGATGTGTGGGCCTACAGGCATTGGATTCTTGTAGATTGATCTATTGTTTGCAATGCCTCCATTCTTAGATGGTGGAGATTTCTTGACCATTCCACATTTGCACAACCTCGTTCCAGATTTGAAGCTGGGACGCCTACAATTGGAGAAGCAATTGGTTTGGGGAGCTGCTATTGATTATTTATCTAGGATCGAAATGCAAAAAATTCATAGTTACGAAGTGAGTTGATTGAAATTTGGTATATACCCTTTGTTTGAGAATTTTTG

Coding sequence (CDS)

ATGCCTCCATTCTTAGATGGTGGAGATTTCTTGACCATTCCACATTTGCACAACCTCGTTCCAGATTTGAAGCTGGGACGCCTACAATTGGAGAAGCAATTGGTTTGGGGAGCTGCTATTGATTATTTATCTAGGATCGAAATGCAAAAAATTCATAGTTACGAAGTGAGTTGA

Protein sequence

MPPFLDGGDFLTIPHLHNLVPDLKLGRLQLEKQLVWGAAIDYLSRIEMQKIHSYEVS
Homology
[Close]
BLAST of Cmc07g0185091 vs. ExPASy Swiss-Prot
Match: Q93WX6 (Cysteine desulfurase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NFS2 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 7.1e-04
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 0 

Query: 1   MPPFLDGGDFLT---IPHLHNLVPD--LKLGRLQLEKQLVWGAAIDYLSRIEMQKIHSYE 57
           MPPFL GG+ ++   + H     P    + G   + + +  GAA+DYLS I M KIH YE
Sbjct: 295 MPPFLGGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYE 354

[Close]
BLAST of Cmc07g0185091 vs. TAIR 10
Match: AT1G08490.1 (chloroplastic NIFS-like cysteine desulfurase )

HSP 1 Score: 43.9 bits (102), Expect = 5.0e-05
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 0 

Query: 1   MPPFLDGGDFLT---IPHLHNLVPD--LKLGRLQLEKQLVWGAAIDYLSRIEMQKIHSYE 57
           MPPFL GG+ ++   + H     P    + G   + + +  GAA+DYLS I M KIH YE
Sbjct: 295 MPPFLGGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYE 354

The following BLAST results are available for this feature:
BLAST of Cmc07g0185091 vs.
Match NameE-valueIdentityDescription
BLAST of Cmc07g0185091 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93WX67.1e-0440.98Cysteine desulfurase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NFS2 PE... [more]
BLAST of Cmc07g0185091 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cmc07g0185091 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G08490.15.0e-0540.98chloroplastic NIFS-like cysteine desulfurase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0185091.1Cmc07g0185091.1mRNA