Cmc07g0184761 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0184761
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
LocationCMiso1.1chr07: 2758833 .. 2759207 (-)
RNA-Seq ExpressionCmc07g0184761
SyntenyCmc07g0184761
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGACGATAACACTGAGGGAGGTGGGTACGGGCGACAACCGTCGGGAAGGGCCCACGAAACGGTTATCTGATGCCGAGTTCCAAGCTCGAAGGGAAAAAGGGTTATGTTTTCGCTGTGGGGAGAAGTATTTCGCCGGACATCGGTGCAAGTCGAAGGAGCATAAGGAGCTTCGAATGCTGGTAGTCAAGGAAGGAGGGGAGGAACTGGAGATTGTGGAGGAAGAGTTTTTTGATGCCGAAACTGAGATGAAACCAGCTGAAGTACCAAACGTGGAAAATTTAAACATAGAACTATCGCTCAACTCCGTGGTGGGGCTGAACAATCCGGGAACCATGAAAGTAAAAGGGAAGGTGGGGGAGAAGAAGTGGTGA

mRNA sequence

ATGAGGACGATAACACTGAGGGAGGTGGGTACGGGCGACAACCGTCGGGAAGGGCCCACGAAACGGTTATCTGATGCCGAGTTCCAAGCTCGAAGGGAAAAAGGGTTATGTTTTCGCTGTGGGGAGAAGTATTTCGCCGGACATCGGTGCAAGTCGAAGGAGCATAAGGAGCTTCGAATGCTGGTAGTCAAGGAAGGAGGGGAGGAACTGGAGATTGTGGAGGAAGAGTTTTTTGATGCCGAAACTGAGATGAAACCAGCTGAAGTACCAAACGTGGAAAATTTAAACATAGAACTATCGCTCAACTCCGTGGTGGGGCTGAACAATCCGGGAACCATGAAAGTAAAAGGGAAGGTGGGGGAGAAGAAGTGGTGA

Coding sequence (CDS)

ATGAGGACGATAACACTGAGGGAGGTGGGTACGGGCGACAACCGTCGGGAAGGGCCCACGAAACGGTTATCTGATGCCGAGTTCCAAGCTCGAAGGGAAAAAGGGTTATGTTTTCGCTGTGGGGAGAAGTATTTCGCCGGACATCGGTGCAAGTCGAAGGAGCATAAGGAGCTTCGAATGCTGGTAGTCAAGGAAGGAGGGGAGGAACTGGAGATTGTGGAGGAAGAGTTTTTTGATGCCGAAACTGAGATGAAACCAGCTGAAGTACCAAACGTGGAAAATTTAAACATAGAACTATCGCTCAACTCCGTGGTGGGGCTGAACAATCCGGGAACCATGAAAGTAAAAGGGAAGGTGGGGGAGAAGAAGTGGTGA

Protein sequence

MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVGEKKW
Homology
[Close]
BLAST of Cmc07g0184761 vs. NCBI nr
Match: KAA0035107.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 650 MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 709

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 710 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 769

Query: 121 EK 123
           E+
Sbjct: 770 EE 771

[Close]
BLAST of Cmc07g0184761 vs. NCBI nr
Match: KAA0055700.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 304 MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 363

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 364 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 423

Query: 121 EKK 124
           E++
Sbjct: 424 EEE 426

[Close]
BLAST of Cmc07g0184761 vs. NCBI nr
Match: KAA0063375.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 346 MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 405

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 406 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 465

Query: 121 EKK 124
           E++
Sbjct: 466 EEE 468

[Close]
BLAST of Cmc07g0184761 vs. NCBI nr
Match: KAA0038753.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 4.2e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 830 MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 889

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 890 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 949

[Close]
BLAST of Cmc07g0184761 vs. NCBI nr
Match: TYK00786.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 4.2e-59
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGP KRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 771 MRTITLREVGTGDNRREGPMKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 830

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 831 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 890

Query: 121 EKK 124
           E++
Sbjct: 891 EEE 893

[Close]
BLAST of Cmc07g0184761 vs. ExPASy TrEMBL
Match: A0A5A7VBU7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00030 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.1e-60
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 346 MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 405

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 406 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 465

Query: 121 EKK 124
           E++
Sbjct: 466 EEE 468

[Close]
BLAST of Cmc07g0184761 vs. ExPASy TrEMBL
Match: A0A5A7T0J9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001820 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.1e-60
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 650 MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 709

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 710 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 769

Query: 121 EK 123
           E+
Sbjct: 770 EE 771

[Close]
BLAST of Cmc07g0184761 vs. ExPASy TrEMBL
Match: A0A5A7UKN8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00820 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.1e-60
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 304 MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 363

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 364 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 423

Query: 121 EKK 124
           E++
Sbjct: 424 EEE 426

[Close]
BLAST of Cmc07g0184761 vs. ExPASy TrEMBL
Match: A0A5A7SS61 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00430 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 387 MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 446

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 447 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 506

[Close]
BLAST of Cmc07g0184761 vs. ExPASy TrEMBL
Match: A0A5D3DMY9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00980 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 60
           MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM
Sbjct: 387 MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRM 446

Query: 61  LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 120
           LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG
Sbjct: 447 LVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNPGTMKVKGKVG 506

The following BLAST results are available for this feature:
BLAST of Cmc07g0184761 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035107.18.6e-6099.18Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0055700.18.6e-6098.37Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0063375.18.6e-6098.37Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0038753.14.2e-59100.00Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK00786.14.2e-5997.56Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Cmc07g0184761 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc07g0184761 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VBU74.1e-6098.37Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7T0J94.1e-6099.18Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7UKN84.1e-6098.37Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SS612.1e-59100.00Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DMY92.1e-59100.00Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Cmc07g0184761 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0184761.1Cmc07g0184761.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006488 dolichol-linked oligosaccharide biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding