Cmc07g0183711 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0183711
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	protein DCL, chloroplastic
Location	CMiso1.1chr07: 2055068 .. 2059228 (-)
RNA-Seq Expression	Cmc07g0183711
Synteny	Cmc07g0183711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCACTTCATGCTGAGCTCGGAGCTGCTCTCCACATGAACGTTTGTGATCCTCATGGCTGCTTCTTTTCTTTTCAGAGGTCATCCGCTCCTGCGGTTAGGGCTTAAGCGCCGCGGGCTGTGTACTGGGGTTGTGCAAGTGACTCGCCGGTCTTGCTGCAGTGCGACGGTGGCGTCTACTCCATCGGACGGCGACTTAACAGCTGGTGATAATGCTACCTCATTGGTGAGTTCCAGTGAGCCACCAAAGTACCAAAGATGGGACGAGCCTGATTATCGAAAGTGGAAGAATCAGGAGGAGGAAATTCTTGGCGATATCGAGCCTATCATATTCCTCACTAAAGAAATCCTCCACTCCCATAGGTTTGTCCTGCTCTCAAAATTTTACCCCGTAAGTTTTTTACTCTCTATTATAGGAATTAGGCGTTTTCTTTCTAGTTGCTGTGCAGCTGTGCGAGAAAACGTTGAAGGAAAAATATGTTTATCTTTTTGGACTCCTGGAATAGGAACCTCCGTGGCTCGAAGAATATATTATATTGTACTGTAGATTGGAGAAAATGCTTTGTTAAACTTCACTGACAGACATATAAAACTTTTGAGTCAGGACGTAGAGAAAAATCCATTGTTTTGAAGGAAAAAAAACCAAAATTTTTGTTCAAGAAACATCCGGAATGCCTTTTGACTAGAGGTAATGAAGGATGTAAAGCGGAAATGTACCTGCATCTGTCTTTGGAAATTTGCTAGCAGGTAGATGCGAATGGGAAAGTAACGTGAAAAGTAAATATGAAGCGGACAATTTTAAGTTTATAACTTCTTGGTAACTGAACATCAATTATTAGGTTTTTTTTTTTTTTTTTTTTTTTTTACTTCTACTTTGAATCAATTTGAAATGGCATTCCAATATGATTATTACTTTCAGTACATGAACTCCTAGCCAGATCATTTGATAAGTAGCATAATGCATTTGATATTTACATACAATACGAGACCCTAGATGTTGGATCTTTTCTAAAACTATAGCAACTACGGATGAGCTTTCAGAAACATTATGGTAGAAAGAAAATGAATAGTGTAATTAGGTTAGTAGTATGTTGTTTGTGCCCTTCCTAATCTTTCTGTGTTTATTTGGGTTCTAAGTAACTATCGACAGCCTCTGCAAAAAACAAGCAGTGTGCCTTAGAGTTACTTTATGCCAACAGATCACTATGTGTCAGTTGTCAGCTGAGTGCTTATTGCTGAAATTTTGGAACTGTGAAATTATGGATTAAAATTTTCATTTTTTTTTCATTCTCACCGTACCCCCCCCCCCCCCCCCCCCCCCAAAAGAATTTAAAACCCAGTTAAGAGAAAAACGTATGTGGTTGTGATGCGATATTATTAAGGTATTGATCATGATGCTGCACCAAATTTTCGCTACTGGCATACTTATCTATATGTATGTGGGATGCAAACAGTATTTGGTTCTCTCTTGGACATTAAGTCACAACTTAATTAATTAATGCACTCATCTTTCAGTTCTATCCAAGCAGTTGTCAGTTGTGCGGCTAGAGGAAGGGATTTTTTTTTTTTTTTTTTTTTTTTGTATGTTAGTGCAGTAGGGCCCTTGGGCAAGCGTGTGTTTGATAGTTTCATTTTGGGAGATATTCAAGCCTCTCACTTTGTTTGAGACTTGCCTCTTTTTTCTTTTATTTTGTCCTCTTTGGAATTAGCTAACTCGGATTTGTGTTGACAATTTTATCGATATTTCTTGACACAATACTTTTATAGGTTTTCTTCCATTTGGTTGCTTACAGGAGTTATGATTGTAACCTGTATGCTGCCTTTGATCTTCTCCATTTTGTATAGTATTCCATTCATAATTTTATGATAATTGAGATCAATGGTTATTGGTTATGTTCAGTGAGAACTAGTGGGTGACCATGTAGCTTTTTACTGGTAAAAGCAGTGGTTTCATCAATGTGTAGGGTAGGTTGCCAGGTTGGCTTGTTCATGGGTTGGTCTCATTAGGCACTTTTCTATAAAATATATAGCTCGTGTTTCTGTTTGACGATCACACTTCACTCCTATGATATTATGCCCCCCTCTTAAGGACCTCTATTTTGTACACTAGGTATGCGGATGGGGAGCGATTGACATTGGAGGATGAGAGAACTGTGGTAGACAGACTTCTGGCACATCATCCACATGCGGAAGATAAAATTGGATGTGGACTTGAATCCATCATGGTACGCTCTTATCTTAGACTACAATTGCAGTTTGCATGGCTTATTTTGTTAGGTTGTATTGAAGTAAGATCAGAAAAAGAACCAAATGACATTAGGTTTATGGATTTTTTTTTTTTTTGGAATGGTATTGTAATACAATGTGGGGTGGGTAGATTTGAACTTAGGACCTCTTGTCCACCGATATATATAGGTGCTAATTGAGTTGAGCTCATGTTGGCAAGTTTATGGATATTTCTAAAAGCTCAAAATGTAATGGGAAGGGGGATGTAGATTTACATGTTCTAGTAGGATGGAAGGCTTTGAGTGCAGTTGCATGGACATCATGCTTGAGAGGTCCAAGAATCTTATGAAATGAAATCTGCAACTTTAGCTCTGAAGAAATAATAGGACAATAGGAACCAGGCTGATATAACCATAAGATAAGAAAGGATTATAAAGTTGGGAATATTTATTTGAGATTTTCCCCTAATTTTCTCAATTCCAAGCTACATTAAATCTGACGTGAACACCAATAATCTCTGATATTCCAGTCTTGGTTAATGATTCCAGCGCATATTAAAAAGGAAAATTTAAATAATTTTGAACTTTTTGAAAACTTTGTCCTACCAATTACCAGTCAATAACTAAATGTAGTGTAAAGATAAAAGGTTGGAATTGATAGTAAGGCTAAGAGAAACCACGACTCCAAAAACTACGTAGATGGGTAGGAACTAAAAAAGAGAGATTGAAGTAGTTCAGACGATTCAATAATCTTACTTCAGTTCGTAATTTTTGGTTGGATAAATCTTAGTGATGGACTATTTTTCATGACACTTTACCTTCATTTTCTAGCCAAACAAAGTCCTCATGTTCTCATTTTTTCCTTTTCCTACCCACTTCTCATTTTAAGATGTTGTGCATACTTCGCTAGATGATAGTACAAGTTCATGCGAGGCTCTCTAGTTTATATATGCTCTTTCCATAAAGTGAAGAAAGGTTGAAAATTACAACAGACTTAATTTTCCGTCTTTTAACATGAGCATAGCTGACTTGAACTTGTACTATCAACTTTGAGGTATGAGGTTTGATTTCCCACCCCACATCTTGTCAAAAGTTGTTTTCTGTACCCTTCACCTTCATCATATGGGCAAACAAAATCATCCTGTTCTTTTTCTTTTCCTGATGTTTGTCCACACCATCTGGAGCTCTTATACCTTATTCAAGGAAGAGCAAACTGGAAATGCCGTTGCTAATAATGTGGTGAAGTAACAGTTTTTGTTTCTTTTTGTTCGAGTTTCTATTTTGAATCAGGGAGTTGTAACTTAGTAACTTCTTTTAGTCAGCTAAGTTCTTTTCGATGAATTATTTATATACTGTGTTTTTTAAAATACTGGGCATCGTTTTGTATTTCGTGTGGCTTCCTGAAAGCAAGGTATGTGGAGAGATTGACGACCCTCTCGAACTAGTAATTAGGATATAAGTTGCTTGTGAACAAGGGTTTCTATTACACTTTTAGTTTTGATATCCATAAAGCTTCACTCGTATATTATATTGTTTGATAGAGGTATTTGATGTTCATCTTGTTTAAGTTATTTTCTGCTATTGAAGGTCGATCGGCACCCCCAATTTCGGCACTCAAGATGCTTCTTTGTTATAAGGACCGATGGTGGATGGATTGACTTCTCATATCAAAAGTGTCTTCGGGCATATATCCGAAACAAATACCCATCGTTTGCAGAGCGGTTTATTCGCGAGCATTTCAAACGTGGTAGTTGATGAATTTATGCTACCGTTGACGCTGAGCTATGGTTTAACTGAATTTGTTTTAATCGAGAGAGATGTATGAATGATAAGGGTATGTTTGGCTTGCACTTGTATTTACAAATTTATTGAGTTCAGTAAATATGGTACGCAACCCGAATTTTGATTTTTTAAAACTGTTTTTGAATTTTGTGATT

mRNA sequence

GGTCACTTCATGCTGAGCTCGGAGCTGCTCTCCACATGAACGTTTGTGATCCTCATGGCTGCTTCTTTTCTTTTCAGAGGTCATCCGCTCCTGCGGTTAGGGCTTAAGCGCCGCGGGCTGTGTACTGGGGTTGTGCAAGTGACTCGCCGGTCTTGCTGCAGTGCGACGGTGGCGTCTACTCCATCGGACGGCGACTTAACAGCTGGTGATAATGCTACCTCATTGGTGAGTTCCAGTGAGCCACCAAAGTACCAAAGATGGGACGAGCCTGATTATCGAAAGTGGAAGAATCAGGAGGAGGAAATTCTTGGCGATATCGAGCCTATCATATTCCTCACTAAAGAAATCCTCCACTCCCATAGGTATGCGGATGGGGAGCGATTGACATTGGAGGATGAGAGAACTGTGGTAGACAGACTTCTGGCACATCATCCACATGCGGAAGATAAAATTGGATGTGGACTTGAATCCATCATGGTCGATCGGCACCCCCAATTTCGGCACTCAAGATGCTTCTTTGTTATAAGGACCGATGGTGGATGGATTGACTTCTCATATCAAAAGTGTCTTCGGGCATATATCCGAAACAAATACCCATCGTTTGCAGAGCGGTTTATTCGCGAGCATTTCAAACGTGGTAGTTGATGAATTTATGCTACCGTTGACGCTGAGCTATGGTTTAACTGAATTTGTTTTAATCGAGAGAGATGTATGAATGATAAGGGTATGTTTGGCTTGCACTTGTATTTACAAATTTATTGAGTTCAGTAAATATGGTACGCAACCCGAATTTTGATTTTTTAAAACTGTTTTTGAATTTTGTGATT

Coding sequence (CDS)

ATGGCTGCTTCTTTTCTTTTCAGAGGTCATCCGCTCCTGCGGTTAGGGCTTAAGCGCCGCGGGCTGTGTACTGGGGTTGTGCAAGTGACTCGCCGGTCTTGCTGCAGTGCGACGGTGGCGTCTACTCCATCGGACGGCGACTTAACAGCTGGTGATAATGCTACCTCATTGGTGAGTTCCAGTGAGCCACCAAAGTACCAAAGATGGGACGAGCCTGATTATCGAAAGTGGAAGAATCAGGAGGAGGAAATTCTTGGCGATATCGAGCCTATCATATTCCTCACTAAAGAAATCCTCCACTCCCATAGGTATGCGGATGGGGAGCGATTGACATTGGAGGATGAGAGAACTGTGGTAGACAGACTTCTGGCACATCATCCACATGCGGAAGATAAAATTGGATGTGGACTTGAATCCATCATGGTCGATCGGCACCCCCAATTTCGGCACTCAAGATGCTTCTTTGTTATAAGGACCGATGGTGGATGGATTGACTTCTCATATCAAAAGTGTCTTCGGGCATATATCCGAAACAAATACCCATCGTTTGCAGAGCGGTTTATTCGCGAGCATTTCAAACGTGGTAGTTGA

Protein sequence

MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSSSEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKRGS

Homology

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BLAST of Cmc07g0183711 vs. NCBI nr
Match: XP_008452601.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 409.5 bits (1051), Expect = 1.7e-110
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD
Sbjct: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSFAERFIREHFKRGS 197
           PSFAERFIREHFKRGS
Sbjct: 181 PSFAERFIREHFKRGS 196

[Close]

BLAST of Cmc07g0183711 vs. NCBI nr
Match: XP_004141276.2 (protein DCL, chloroplastic [Cucumis sativus])

HSP 1 Score: 390.6 bits (1002), Expect = 8.1e-105
Identity = 187/196 (95.41%), Postives = 189/196 (96.43%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           MAASFLFRGHPLLRLGLKRRG CTG+VQVT R CCSAT ASTPSDGDLTAGDNATS+VS 
Sbjct: 16  MAASFLFRGHPLLRLGLKRRGQCTGIVQVTCRFCCSATAASTPSDGDLTAGDNATSVVSV 75

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           SEPPKY RWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD
Sbjct: 76  SEPPKYLRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 135

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFR SRCFFVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 136 RLLAHHPHAEDKIGCGLESIMVDRHPQFRQSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 195

Query: 181 PSFAERFIREHFKRGS 197
           PSFAERFIREHFKRGS
Sbjct: 196 PSFAERFIREHFKRGS 211

[Close]

BLAST of Cmc07g0183711 vs. NCBI nr
Match: KAE8649869.1 (hypothetical protein Csa_012968 [Cucumis sativus])

HSP 1 Score: 390.6 bits (1002), Expect = 8.1e-105
Identity = 187/196 (95.41%), Postives = 189/196 (96.43%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           MAASFLFRGHPLLRLGLKRRG CTG+VQVT R CCSAT ASTPSDGDLTAGDNATS+VS 
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGQCTGIVQVTCRFCCSATAASTPSDGDLTAGDNATSVVSV 60

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           SEPPKY RWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD
Sbjct: 61  SEPPKYLRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFR SRCFFVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRQSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSFAERFIREHFKRGS 197
           PSFAERFIREHFKRGS
Sbjct: 181 PSFAERFIREHFKRGS 196

[Close]

BLAST of Cmc07g0183711 vs. NCBI nr
Match: XP_022135338.1 (protein DCL, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 355.1 bits (910), Expect = 3.8e-94
Identity = 166/196 (84.69%), Postives = 180/196 (91.84%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           MAAS L RGHPLLRLGL+ RGLCTG+VQVTRRSCC+AT A TP DG+LT+ +N TS++SS
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAAPTPPDGNLTSAENITSVLSS 60

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           S+PPKY RWDEPDYRKWK+QEEE+L DIEPII LTKEILHS+RY DGERLT  DER VV+
Sbjct: 61  SDPPKYSRWDEPDYRKWKDQEEEMLNDIEPIISLTKEILHSNRYVDGERLTSVDERIVVN 120

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRC FVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSFAERFIREHFKRGS 197
           PS+AERFIREHFKRGS
Sbjct: 181 PSYAERFIREHFKRGS 196

[Close]

BLAST of Cmc07g0183711 vs. NCBI nr
Match: KAG6608449.1 (Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347.4 bits (890), Expect = 7.9e-92
Identity = 160/196 (81.63%), Postives = 177/196 (90.31%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           M AS L RGHPL+RLGL+ RGLCTG+VQVTRRSCC+A  ASTP  G L++ +N TS++S+
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGIVQVTRRSCCTAMPASTPPGGGLSSAENTTSVLSA 60

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           ++PPKYQRWDEP YRKWKNQEEEIL DI+P+I LTKEILHS+RY DGERLT EDE+ VVD
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPVISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRC FVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSFAERFIREHFKRGS 197
           P +AERFIREHFKRGS
Sbjct: 181 PLYAERFIREHFKRGS 196

[Close]

BLAST of Cmc07g0183711 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-28
Identity = 62/168 (36.90%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 27  VQVTRRSCCSATVASTPSDGDLTAGDNATSLVSSSEPPKYQRWDEPDYRKWKNQEEEILG 86
           V+  R     A + ++ S G         +   SSE  + +  +  +  ++ + E++IL 
Sbjct: 47  VRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDEFVDWEDKILE 106

Query: 87  DIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCGLESIMVDRHP 146
              P++   + ILHS +YA+ +RL+ E ERT+++ LL +HP  E KIGCG++ IMV  HP
Sbjct: 107 VTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHP 166

Query: 147 QFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKR 195
            F  SRC F++R DG  +DFSY KC++  I+ KYP +A+ FI  HF++
Sbjct: 167 DFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214

[Close]

BLAST of Cmc07g0183711 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-28
Identity = 65/177 (36.72%), Postives = 98/177 (55.37%), Query Frame = 0


Query: 35  CSATVASTPSDGDLTAGDNA---------TSLVSSSEPPKYQRWDEPDY--------RKW 94
           C      T S+G     DNA         T L ++SE  +  + +  D           W
Sbjct: 43  CRCAAVKTGSEGGGIRSDNAELLRKPVISTELETTSESEELVKEESDDEVGKKSGDGEGW 102

Query: 95  KNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCGL 154
            + E++IL D  P++   + ILHS +YA G+RL+ + +RT++ RLL +HP  + KIG G+
Sbjct: 103 VDWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGV 162

Query: 155 ESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKR 195
           + I V  HP F +SRC F++R DG  +DFSY KC++  IR  YP +A+ FI  HF++
Sbjct: 163 DYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219

[Close]

BLAST of Cmc07g0183711 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 49/116 (42.24%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 79   NQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCGLE 138
            ++E+E+L D+EP++   ++I+H   Y DG+ ++ +D+  V++++L  HP  E K+G G++
Sbjct: 1734 SEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVD 1793

Query: 139  SIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKR 195
             I VD+H  F  SRCFFV+ TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1794 FITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]

BLAST of Cmc07g0183711 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.1e-07
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 77   WKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCG 136
            WKN        IE +    K ILHS  Y   E L   DE  +V  +L  HP++ +KIG G
Sbjct: 1336 WKN--------IELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPG 1395

Query: 137  LESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKRGS 196
            ++ I V +  +   S CF V+R DG + DFSY KC+    +   P     +  ++ K G+
Sbjct: 1396 VKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443

[Close]

BLAST of Cmc07g0183711 vs. ExPASy Swiss-Prot
Match: Q8L557 (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 32/106 (30.19%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 75  RKWKNQEEEILGDIE--PIIFLTKEILHS------HRYADGERLTLEDERTVVDRLLAHH 134
           +K K  EEE  G ++  P  F+T   +        H +     +   +   ++D +   H
Sbjct: 54  KKQKVGEEEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGH 113

Query: 135 PHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCL 173
              E KIG G+++  V  HP ++ SRCFF++R D    DFS++KC+
Sbjct: 114 SEPEKKIGGGIKTFQVRTHPMWK-SRCFFLVREDDTADDFSFRKCV 158

[Close]

BLAST of Cmc07g0183711 vs. ExPASy TrEMBL
Match: A0A1S3BU88 (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 8.2e-111
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD
Sbjct: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSFAERFIREHFKRGS 197
           PSFAERFIREHFKRGS
Sbjct: 181 PSFAERFIREHFKRGS 196

[Close]

BLAST of Cmc07g0183711 vs. ExPASy TrEMBL
Match: A0A0A0L0D6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641650 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 3.9e-105
Identity = 187/196 (95.41%), Postives = 189/196 (96.43%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           MAASFLFRGHPLLRLGLKRRG CTG+VQVT R CCSAT ASTPSDGDLTAGDNATS+VS 
Sbjct: 16  MAASFLFRGHPLLRLGLKRRGQCTGIVQVTCRFCCSATAASTPSDGDLTAGDNATSVVSV 75

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           SEPPKY RWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD
Sbjct: 76  SEPPKYLRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 135

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFR SRCFFVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 136 RLLAHHPHAEDKIGCGLESIMVDRHPQFRQSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 195

Query: 181 PSFAERFIREHFKRGS 197
           PSFAERFIREHFKRGS
Sbjct: 196 PSFAERFIREHFKRGS 211

[Close]

BLAST of Cmc07g0183711 vs. ExPASy TrEMBL
Match: A0A6J1C4J4 (protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007322 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.8e-94
Identity = 166/196 (84.69%), Postives = 180/196 (91.84%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           MAAS L RGHPLLRLGL+ RGLCTG+VQVTRRSCC+AT A TP DG+LT+ +N TS++SS
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAAPTPPDGNLTSAENITSVLSS 60

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           S+PPKY RWDEPDYRKWK+QEEE+L DIEPII LTKEILHS+RY DGERLT  DER VV+
Sbjct: 61  SDPPKYSRWDEPDYRKWKDQEEEMLNDIEPIISLTKEILHSNRYVDGERLTSVDERIVVN 120

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRC FVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSFAERFIREHFKRGS 197
           PS+AERFIREHFKRGS
Sbjct: 181 PSYAERFIREHFKRGS 196

[Close]

BLAST of Cmc07g0183711 vs. ExPASy TrEMBL
Match: A0A6J1J4G4 (protein DCL homolog, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481165 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.4e-91
Identity = 159/196 (81.12%), Postives = 177/196 (90.31%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           M AS L RGHPL+RLGL+ RGLCTG++QVTRRSCC+A  ASTP  G L++ +N TS++S+
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGILQVTRRSCCTAMPASTPPGGGLSSAENTTSVLST 60

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           ++PPKYQRWDEP YRKWKNQEEEIL DI+PII LTKEILHS+RY DGERLT EDE+ VVD
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPIISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRC FVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSFAERFIREHFKRGS 197
           P +A+RFIREHFKRGS
Sbjct: 181 PLYADRFIREHFKRGS 196

[Close]

BLAST of Cmc07g0183711 vs. ExPASy TrEMBL
Match: A0A6J1FNQ4 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445919 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.2e-91
Identity = 159/196 (81.12%), Postives = 176/196 (89.80%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60
           M AS L RGHPL+RLGL+ RGLC G+VQVTRRSCC+A  ASTP  G L++ +N TS++S+
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCAGIVQVTRRSCCTAVPASTPPGGGLSSAENTTSVLSA 60

Query: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120
           ++PPKYQRW+EP YRKWKNQEEEIL DI+PII LTKEILHS+RY DGERLT EDE+ VVD
Sbjct: 61  TDPPKYQRWNEPGYRKWKNQEEEILSDIDPIISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180
           RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRC FVIRTDGGWIDFSYQKCLRAYIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSFAERFIREHFKRGS 197
           P +AERFIREHFKRGS
Sbjct: 181 PLYAERFIREHFKRGS 196

[Close]

BLAST of Cmc07g0183711 vs. TAIR 10
Match: AT3G46630.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 224.9 bits (572), Expect = 5.5e-59
Identity = 120/210 (57.14%), Postives = 143/210 (68.10%), Query Frame = 0


Query: 1   MAASFLFRGHPLLRLG-LKRRG----LCTGVVQVTRRSCCSA---------TVASTPSDG 60
           M +  L R  PLLR G L  R     +  G++   RR  CS            + +P +G
Sbjct: 1   MTSLLLLRTLPLLRNGFLNHRHQVGIVAGGILSHRRRLLCSLADRPQFYENNDSVSPVEG 60

Query: 61  DLTAGDNATSLVSSSEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYAD 120
              A  N TS V  +      R+++PDYRKWKN E EIL DIEPI  L KEILHS RY D
Sbjct: 61  SGAAAMNVTSPVVDNS----WRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLD 120

Query: 121 GERLTLEDERTVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDF 180
           GERL  EDE+ V+++LL +HP+++DKIGCGL+ IMVDRHPQFRHSRC FV+RTDGGWIDF
Sbjct: 121 GERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDF 180

Query: 181 SYQKCLRAYIRNKYPSFAERFIREHFKRGS 197
           SYQKCLRAY+R+KYPS AERFIREHFKR S
Sbjct: 181 SYQKCLRAYVRDKYPSHAERFIREHFKRAS 206

[Close]

BLAST of Cmc07g0183711 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-29
Identity = 62/168 (36.90%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 27  VQVTRRSCCSATVASTPSDGDLTAGDNATSLVSSSEPPKYQRWDEPDYRKWKNQEEEILG 86
           V+  R     A + ++ S G         +   SSE  + +  +  +  ++ + E++IL 
Sbjct: 47  VRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDEFVDWEDKILE 106

Query: 87  DIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCGLESIMVDRHP 146
              P++   + ILHS +YA+ +RL+ E ERT+++ LL +HP  E KIGCG++ IMV  HP
Sbjct: 107 VTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHP 166

Query: 147 QFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKR 195
            F  SRC F++R DG  +DFSY KC++  I+ KYP +A+ FI  HF++
Sbjct: 167 DFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214

[Close]

BLAST of Cmc07g0183711 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-29
Identity = 62/168 (36.90%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 27  VQVTRRSCCSATVASTPSDGDLTAGDNATSLVSSSEPPKYQRWDEPDYRKWKNQEEEILG 86
           V+  R     A + ++ S G         +   SSE  + +  +  +  ++ + E++IL 
Sbjct: 47  VRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDEFVDWEDKILE 106

Query: 87  DIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCGLESIMVDRHP 146
              P++   + ILHS +YA+ +RL+ E ERT+++ LL +HP  E KIGCG++ IMV  HP
Sbjct: 107 VTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHP 166

Query: 147 QFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKR 195
            F  SRC F++R DG  +DFSY KC++  I+ KYP +A+ FI  HF++
Sbjct: 167 DFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214

[Close]

BLAST of Cmc07g0183711 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-25
Identity = 49/116 (42.24%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 79   NQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCGLE 138
            ++E+E+L D+EP++   ++I+H   Y DG+ ++ +D+  V++++L  HP  E K+G G++
Sbjct: 1734 SEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVD 1793

Query: 139  SIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKR 195
             I VD+H  F  SRCFFV+ TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1794 FITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]

BLAST of Cmc07g0183711 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-08
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 77   WKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCG 136
            WKN        IE +    K ILHS  Y   E L   DE  +V  +L  HP++ +KIG G
Sbjct: 1336 WKN--------IELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPG 1395

Query: 137  LESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKRGS 196
            ++ I V +  +   S CF V+R DG + DFSY KC+    +   P     +  ++ K G+
Sbjct: 1396 VKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443

The following BLAST results are available for this feature:

BLAST of Cmc07g0183711 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452601.1	1.7e-110	100.00	PREDICTED: protein DCL, chloroplastic [Cucumis melo]	[more]
XP_004141276.2	8.1e-105	95.41	protein DCL, chloroplastic [Cucumis sativus]	[more]
KAE8649869.1	8.1e-105	95.41	hypothetical protein Csa_012968 [Cucumis sativus]	[more]
XP_022135338.1	3.8e-94	84.69	protein DCL, chloroplastic isoform X1 [Momordica charantia]	[more]
KAG6608449.1	7.9e-92	81.63	Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cmc07g0183711 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C642	2.9e-28	36.90	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
Q42463	8.3e-28	36.72	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
Q5D869	1.9e-24	42.24	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
Q9LQ02	8.1e-07	34.17	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]
Q8L557	1.2e-05	30.19	Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1	[more]

BLAST of Cmc07g0183711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BU88	8.2e-111	100.00	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1	[more]
A0A0A0L0D6	3.9e-105	95.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641650 PE=4 SV=1	[more]
A0A6J1C4J4	1.8e-94	84.69	protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1J4G4	1.4e-91	81.12	protein DCL homolog, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FNQ4	3.2e-91	81.12	protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Cmc07g0183711 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46630.1	5.5e-59	57.14	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	2.0e-29	36.90	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	4.5e-29	36.90	Protein of unknown function (DUF3223)	[more]
AT2G40030.1	1.4e-25	42.24	nuclear RNA polymerase D1B	[more]
AT1G63020.1	5.7e-08	34.17	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF11523	DUF3223	coord: 96..172 e-value: 7.7E-30 score: 103.4
None	No IPR available	GENE3D	3.10.450.40		coord: 90..178 e-value: 6.0E-25 score: 89.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..63
None	No IPR available	PANTHER	PTHR33415:SF4	DCL PROTEIN (DUF3223)	coord: 1..195
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 1..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0183711.1	Cmc07g0183711.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding