Cmc07g0183641 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0183641
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	F-box protein GID2-like
Location	CMiso1.1chr07: 2019793 .. 2021475 (+)
RNA-Seq Expression	Cmc07g0183641
Synteny	Cmc07g0183641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGAAGAAAGAAGAAAGAAAGAAGAATAAAGTTTGTTGGAGGTGTATCCAAACAGGGGGAGTATAGGAATAAGAAAATGAGAATAAGCGTTAAAGCGGGGTTGAGGTTTAATTGTCCGTGAAAACAAACAGGGCAAAAATTGGTGATAGTGGGAAGAAGACACAAGGCGAAGACACAGTTGGTCAATTTGGAGAAAAAAGCATCCAAGTGCATTCAATTCTCATCTTGTCTTCTTCGTAAACCTTCAAAACTTATGCTTTAAGTCTTAACCACTCTTCCCCCAATTCCAAACCCAACTTTCGTTTTTTCTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTCATCCTCAATCCTCAATCTTCATTACCCAATTCCCGTTTCTTTCCTTATCAATTCCATCCTTATTAAACCTCACCCACTATGGTTTCTCTCAATTTTTCCATTTCTTTTCACTAAAACCGGATTTTGCGATTTGTTTTTGTGATGAAGCGAGTCGTTTCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCTAAGGCGGAAACCCAAGATTTTACCCGTGGAGGAGGAGGAGGAGGAGAAGACTGCTCCGACAAGACCGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGCGTGTGTGAGCAAGCAATGGCATAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGTGGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTTACCAAGCCCCAATCCTCATCCTCCTCCTCTTCCTCCTCCTCACCTTCCTCCACATCTTCATCCGCATCCTCTTCCTCATCGGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGAGTGGCTTGGCTTCCATATTCAGTCCATTTAACCATTTTCCTTTCAAATTTGGCAATTGAAATTTCCCTTTCAATGTGTTTTGGATTTGATCTGGGGTTTGTTCTTTTTTTTTTTTTTTTTTCTTTCTTTCTTTCTTTTTCTTCTCTTTCCTTTTGTTTAATTAGATCTGTATCTGATTTGGGTGTGTAGTTTATAAAACAACATAAATTAAATCTCTAACTTTGTTTATCTATCCATCTGATCACATCTATAATTACATATGAAAAAGAAAAGAATTGCAGGAGAGAAAGAAGATGAACCAATAAATGGAAAAAAGCTGTAATGATAAAAAAAGAAAAAGAAAAAAGAAGAAGAAGAAGAAGAAAGAGACGACAGATGTAAAAAGAGGATGGGGATTGAGAAGTTGGAGAATTGAGGTTAATGAAAGAAGAAGGAAATGGAAATGCCCCCGTAAGCTTGTAGACAAATAGCATAAGACAAATAGAGGAGTTGGCTTTTCGAAATTACAGAATACTGAGATCTGAGTAAAGCCAACAGCCAAAACCCAAAACCCAAACAAACAATGCCGTTTTGGGTTTTTTCCTTTTCCTTTTCCTTTTCCTTTCCTTTTCTTTTAC

mRNA sequence

GAAAGAAGAAAGAAGAAAGAAAGAAGAATAAAGTTTGTTGGAGGTGTATCCAAACAGGGGGAGTATAGGAATAAGAAAATGAGAATAAGCGTTAAAGCGGGGTTGAGGTTTAATTGTCCGTGAAAACAAACAGGGCAAAAATTGGTGATAGTGGGAAGAAGACACAAGGCGAAGACACAGTTGGTCAATTTGGAGAAAAAAGCATCCAAGTGCATTCAATTCTCATCTTGTCTTCTTCGTAAACCTTCAAAACTTATGCTTTAAGTCTTAACCACTCTTCCCCCAATTCCAAACCCAACTTTCGTTTTTTCTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTCATCCTCAATCCTCAATCTTCATTACCCAATTCCCGTTTCTTTCCTTATCAATTCCATCCTTATTAAACCTCACCCACTATGGTTTCTCTCAATTTTTCCATTTCTTTTCACTAAAACCGGATTTTGCGATTTGTTTTTGTGATGAAGCGAGTCGTTTCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCTAAGGCGGAAACCCAAGATTTTACCCGTGGAGGAGGAGGAGGAGGAGAAGACTGCTCCGACAAGACCGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGCGTGTGTGAGCAAGCAATGGCATAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGTGGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTTACCAAGCCCCAATCCTCATCCTCCTCCTCTTCCTCCTCCTCACCTTCCTCCACATCTTCATCCGCATCCTCTTCCTCATCGGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGAGTGGCTTGGCTTCCATATTCAGTCCATTTAACCATTTTCCTTTCAAATTTGGCAATTGAAATTTCCCTTTCAATGTGTTTTGGATTTGATCTGGGGTTTGTTCTTTTTTTTTTTTTTTTTTCTTTCTTTCTTTCTTTTTCTTCTCTTTCCTTTTGTTTAATTAGATCTGTATCTGATTTGGGTGTGTAGTTTATAAAACAACATAAATTAAATCTCTAACTTTGTTTATCTATCCATCTGATCACATCTATAATTACATATGAAAAAGAAAAGAATTGCAGGAGAGAAAGAAGATGAACCAATAAATGGAAAAAAGCTGTAATGATAAAAAAAGAAAAAGAAAAAAGAAGAAGAAGAAGAAGAAAGAGACGACAGATGTAAAAAGAGGATGGGGATTGAGAAGTTGGAGAATTGAGGTTAATGAAAGAAGAAGGAAATGGAAATGCCCCCGTAAGCTTGTAGACAAATAGCATAAGACAAATAGAGGAGTTGGCTTTTCGAAATTACAGAATACTGAGATCTGAGTAAAGCCAACAGCCAAAACCCAAAACCCAAACAAACAATGCCGTTTTGGGTTTTTTCCTTTTCCTTTTCCTTTTCCTTTCCTTTTCTTTTAC

Coding sequence (CDS)

ATGAAGCGAGTCGTTTCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCTAAGGCGGAAACCCAAGATTTTACCCGTGGAGGAGGAGGAGGAGGAGAAGACTGCTCCGACAAGACCGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGCGTGTGTGAGCAAGCAATGGCATAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGTGGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTTACCAAGCCCCAATCCTCATCCTCCTCCTCTTCCTCCTCCTCACCTTCCTCCACATCTTCATCCGCATCCTCTTCCTCATCGGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

Protein sequence

MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Homology

[Close]

BLAST of Cmc07g0183641 vs. NCBI nr
Match: XP_008452610.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GID2-like [Cucumis melo var. makuwa] >TYK20166.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 7.2e-98
Identity = 190/193 (98.45%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVVSDGVGDRKMGKKPKAETQDFTR   GGGEDCSDKTGFMNLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTR---GGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFSNRGR 194
           RYYEKMNFSNRGR
Sbjct: 181 RYYEKMNFSNRGR 190

[Close]

BLAST of Cmc07g0183641 vs. NCBI nr
Match: XP_011654137.1 (F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 2.6e-95
Identity = 188/193 (97.41%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVV DGVGDRKMGKKPKAETQDFTR  GGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTR--GGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSSSSSSS SS+SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSSSSSSS-SSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFSNRGR 194
           RYYEKMNFSNRGR
Sbjct: 181 RYYEKMNFSNRGR 190

[Close]

BLAST of Cmc07g0183641 vs. NCBI nr
Match: XP_038900230.1 (F-box protein GID2 [Benincasa hispida])

HSP 1 Score: 326.2 bits (835), Expect = 1.8e-85
Identity = 172/192 (89.58%), Postives = 174/192 (90.62%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVV DG GDRK GKKP+AETQD       GG D SD+TGFMNLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVPDGDGDRKTGKKPRAETQDC-----AGGGDPSDRTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSS      SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSS------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFSNRG 193
           RYYEKMNFSNRG
Sbjct: 181 RYYEKMNFSNRG 181

[Close]

BLAST of Cmc07g0183641 vs. NCBI nr
Match: XP_023536623.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-80
Identity = 165/193 (85.49%), Postives = 174/193 (90.16%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVV +G GDRK  KKP+A + D   GG       SDKTGFMNLDDNLLFEVFKHVDA 
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG------VSDKTGFMNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSSSSSSS SS+S+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSSSSSSS-SSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFSNRGR 194
           RYYEKMNFS+RGR
Sbjct: 181 RYYEKMNFSSRGR 186

[Close]

BLAST of Cmc07g0183641 vs. NCBI nr
Match: KAG6591404.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 309.3 bits (791), Expect = 2.3e-80
Identity = 168/193 (87.05%), Postives = 172/193 (89.12%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVV +G GDRK  KKP+A + D   GG       SDKTGFMNLDDNLLFEVFKHVDA 
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG------VSDKTGFMNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSSSSSSS SSTSSSASSSS   WSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSSSSSSS-SSTSSSASSSS--PWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFSNRGR 194
           RYYEKMNFS+RGR
Sbjct: 181 RYYEKMNFSSRGR 184

[Close]

BLAST of Cmc07g0183641 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45
Identity = 89/154 (57.79%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 38  DKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN 97
           ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG 
Sbjct: 28  EEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQ 87

Query: 98  QQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAM 157
            QLRSVVLALGGFRRLHSL++WPL+KP                                 
Sbjct: 88  NQLRSVVLALGGFRRLHSLYLWPLSKP--------------------------------- 145

Query: 158 IGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 192
               P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 148 ---NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Cmc07g0183641 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.0e-25
Identity = 70/184 (38.04%), Postives = 97/184 (52.72%), Query Frame = 0


Query: 6   SDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMA 65
           S   G+     +P  + Q   +     GE   ++    +L ++L+FEV +  +ARTLA A
Sbjct: 39  SSSQGEASSSSQPPPQQQQEEQPPEDAGE--GEQPRVPDLGEDLVFEVLRRAEARTLAAA 98

Query: 66  ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ 125
           ACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+LGGFRRLH+++I PL    
Sbjct: 99  ACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSLGGFRRLHAVYIRPL---- 158

Query: 126 SSSSSSSSSSPSSTSSSASSSSSASW--SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRY 185
                                    W  +  P   G + PP R G+D+V LSLSL SI +
Sbjct: 159 ------------------------QWRGAGVPRQQGRRQPPVRLGRDQVQLSLSLFSIGF 192

Query: 186 YEKM 187
           ++ M
Sbjct: 219 FQNM 192

[Close]

BLAST of Cmc07g0183641 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-09
Identity = 40/144 (27.78%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 43  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 102
           +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 103 VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKP 162
           VV ALGG+R L+ L I P                                    ++   P
Sbjct: 88  VVSALGGYRCLYFLCIRP------------------------------------VLARLP 133

Query: 163 PARWGKDEVHLSLSLLSIRYYEKM 187
              W +D++ LSLSL  + YYE++
Sbjct: 148 KLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Cmc07g0183641 vs. ExPASy TrEMBL
Match: A0A5A7VFE5 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002980 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 190/193 (98.45%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVVSDGVGDRKMGKKPKAETQDFTR   GGGEDCSDKTGFMNLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTR---GGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFSNRGR 194
           RYYEKMNFSNRGR
Sbjct: 181 RYYEKMNFSNRGR 190

[Close]

BLAST of Cmc07g0183641 vs. ExPASy TrEMBL
Match: A0A1S3BV18 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 190/193 (98.45%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVVSDGVGDRKMGKKPKAETQDFTR   GGGEDCSDKTGFMNLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTR---GGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFSNRGR 194
           RYYEKMNFSNRGR
Sbjct: 181 RYYEKMNFSNRGR 190

[Close]

BLAST of Cmc07g0183641 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 188/193 (97.41%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVV DGVGDRKMGKKPKAETQDFTR  GGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTR--GGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSSSSSSS SS+SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSSSSSSS-SSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFSNRGR 194
           RYYEKMNFSNRGR
Sbjct: 181 RYYEKMNFSNRGR 190

[Close]

BLAST of Cmc07g0183641 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.7e-79
Identity = 159/193 (82.38%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVV +G GDRK  KKP+A + D   GG       SDKTGFMNLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG------VSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSS+SS          S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSSTSS----------SASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 177

Query: 181 RYYEKMNFSNRGR 194
           RYYEKMNFS+RGR
Sbjct: 181 RYYEKMNFSSRGR 177

[Close]

BLAST of Cmc07g0183641 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.2e-79
Identity = 159/193 (82.38%), Postives = 168/193 (87.05%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60
           MKRVV +G GDRK  KKP+A + D   GG       SDKTGF+NLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG------VSDKTGFLNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180
           LTKPQSSSSSSS       S+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSI
Sbjct: 121 LTKPQSSSSSSS-------STSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSI 180

Query: 181 RYYEKMNFSNRGR 194
           RYYEKMNF +RGR
Sbjct: 181 RYYEKMNFGSRGR 180

[Close]

BLAST of Cmc07g0183641 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-46
Identity = 89/154 (57.79%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 38  DKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN 97
           ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG 
Sbjct: 28  EEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQ 87

Query: 98  QQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAM 157
            QLRSVVLALGGFRRLHSL++WPL+KP                                 
Sbjct: 88  NQLRSVVLALGGFRRLHSLYLWPLSKP--------------------------------- 145

Query: 158 IGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 192
               P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 148 ---NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Cmc07g0183641 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 40/144 (27.78%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 43  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 102
           +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 103 VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKP 162
           VV ALGG+R L+ L I P                                    ++   P
Sbjct: 88  VVSALGGYRCLYFLCIRP------------------------------------VLARLP 133

Query: 163 PARWGKDEVHLSLSLLSIRYYEKM 187
              W +D++ LSLSL  + YYE++
Sbjct: 148 KLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Cmc07g0183641 vs. TAIR 10
Match: AT1G21760.1 (F-box protein 7 )

HSP 1 Score: 43.5 bits (101), Expect = 2.2e-04
Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0


Query: 45  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG 95
           L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Sbjct: 62  LPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAG 111

The following BLAST results are available for this feature:

BLAST of Cmc07g0183641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452610.1	7.2e-98	98.45	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GI...	[more]
XP_011654137.1	2.6e-95	97.41	F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230...	[more]
XP_038900230.1	1.8e-85	89.58	F-box protein GID2 [Benincasa hispida]	[more]
XP_023536623.1	1.4e-80	85.49	F-box protein GID2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591404.1	2.3e-80	87.05	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cmc07g0183641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	3.3e-45	57.79	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	5.0e-25	38.04	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	2.2e-09	27.78	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Cmc07g0183641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFE5	3.5e-98	98.45	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BV18	3.5e-98	98.45	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1	[more]
A0A0A0L2H5	1.2e-95	97.41	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A6J1FA22	4.7e-79	82.38	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]
A0A6J1ILD7	6.2e-79	82.38	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]

BLAST of Cmc07g0183641 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	2.4e-46	57.79	F-box family protein	[more]
AT5G48170.1	1.6e-10	27.78	F-box family protein	[more]
AT1G21760.1	2.2e-04	36.00	F-box protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 45..85 e-value: 0.0054 score: 26.0
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 42..86 e-value: 1.6E-7 score: 31.0
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 39..85 score: 9.338503
None	No IPR available	GENE3D	1.20.1280.50		coord: 34..148 e-value: 3.4E-12 score: 48.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 35..188
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 35..188
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 34..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0183641.1	Cmc07g0183641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding