Cmc07g0183141 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0183141
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr07: 1769661 .. 1770269 (-)
RNA-Seq ExpressionCmc07g0183141
SyntenyCmc07g0183141
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGCGGTTGATGTTGAGATTGAAAACACCCCAAAACAATTTGCACTTTTACTATTTTATTATTACTCCTCAAAAAGGTAAATAAGTGAACAAAAATAATCTAAAAATAAAAACTCACTTTAGCTACAAACCTGTAGGTGGAAACGGAAAAATGAAATCATACTACAATATCAACCTTTCAGGGTCACGCTTTCCGATGAAGAGAAGGCAGCGTTTTTCGGTCAGAGACAGCACTTTATCCGACAACTACGGCGTGATTCGACGAGGTTTGACGAGCGTTGGGTTTTGGTGTTCGGGCAGAGACTGGGGTACAGCGGGGTTCTTGGCATCCTCGCGGTGTGGTTGGACGACCATTTTTCCGAAGAGTTACGACAGTCTTTGGGGTAGTTTTCTACGTGTTTGGGTCTTGTTTTTGGAGTATTTTCGAAGCTTTTCGGTCTAGGTATATTTCAGCATGTGTGTCTCTCATATTCTTGGTGTTTGATCGATAATTGTTCTTTGAATTGCTCTTAATAAAATCCCTCCAAGTTAGTTCTCAAAGTGGATGTAGACCAAATTGGTCGAACCCCTATAGATCTTTATGTCGTTTACTTTTTTTATAGCTTTCTT

mRNA sequence

GCGGCGGTTGATGTTGAGATTGAAAACACCCCAAAACAATTTGCACTTTTACTATTTTATTATTACTCCTCAAAAAGGGTCACGCTTTCCGATGAAGAGAAGGCAGCGTTTTTCGGTCAGAGACAGCACTTTATCCGACAACTACGGCGTGATTCGACGAGGTTTGACGAGCGTTGGGTTTTGGTGTTCGGGCAGAGACTGGGGTACAGCGGGGTTCTTGGCATCCTCGCGGTGTGGTTGGACGACCATTTTTCCGAAGAGTTACGACAGTCTTTGGGGTAGTTTTCTACGTGTTTGGGTCTTGTTTTTGGAGTATTTTCGAAGCTTTTCGGTCTAGGTATATTTCAGCATGTGTGTCTCTCATATTCTTGGTGTTTGATCGATAATTGTTCTTTGAATTGCTCTTAATAAAATCCCTCCAAGTTAGTTCTCAAAGTGGATGTAGACCAAATTGGTCGAACCCCTATAGATCTTTATGTCGTTTACTTTTTTTATAGCTTTCTT

Coding sequence (CDS)

ATGTTGAGATTGAAAACACCCCAAAACAATTTGCACTTTTACTATTTTATTATTACTCCTCAAAAAGGGTCACGCTTTCCGATGAAGAGAAGGCAGCGTTTTTCGGTCAGAGACAGCACTTTATCCGACAACTACGGCGTGATTCGACGAGGTTTGACGAGCGTTGGGTTTTGGTGTTCGGGCAGAGACTGGGGTACAGCGGGGTTCTTGGCATCCTCGCGGTGTGGTTGGACGACCATTTTTCCGAAGAGTTACGACAGTCTTTGGGGTAGTTTTCTACGTGTTTGGGTCTTGTTTTTGGAGTATTTTCGAAGCTTTTCGGTCTAG

Protein sequence

MLRLKTPQNNLHFYYFIITPQKGSRFPMKRRQRFSVRDSTLSDNYGVIRRGLTSVGFWCSGRDWGTAGFLASSRCGWTTIFPKSYDSLWGSFLRVWVLFLEYFRSFSV
Homology
[Close]
BLAST of Cmc07g0183141 vs. NCBI nr
Match: KAA0046503.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK01915.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 4.7e-06
Identity = 40/87 (45.98%), Postives = 47/87 (54.02%), Query Frame = 0 

Query: 29  KRRQRFSVRDSTLSDNYGVIRRGLTSVGFWCSGRD---------WGTAGFLASSRCGW-T 88
           K +  FSVR+S LS +YGVIRRGLT VGFWCSGRD         W   G +        T
Sbjct: 211 KEKATFSVRNSALSGSYGVIRRGLTGVGFWCSGRDSDVGVQQGSWHPRGVVRRPFFQQVT 270

Query: 89  TIFPKSYDSLWGSFLRVWVLFLEYFRS 106
           T+F   +D  W  F   W +F E FRS
Sbjct: 271 TVFGVVFDVFWSCF---WGIF-EAFRS 293

[Close]
BLAST of Cmc07g0183141 vs. ExPASy TrEMBL
Match: A0A5D3BRV3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3741G00040 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 40/87 (45.98%), Postives = 47/87 (54.02%), Query Frame = 0 

Query: 29  KRRQRFSVRDSTLSDNYGVIRRGLTSVGFWCSGRD---------WGTAGFLASSRCGW-T 88
           K +  FSVR+S LS +YGVIRRGLT VGFWCSGRD         W   G +        T
Sbjct: 211 KEKATFSVRNSALSGSYGVIRRGLTGVGFWCSGRDSDVGVQQGSWHPRGVVRRPFFQQVT 270

Query: 89  TIFPKSYDSLWGSFLRVWVLFLEYFRS 106
           T+F   +D  W  F   W +F E FRS
Sbjct: 271 TVFGVVFDVFWSCF---WGIF-EAFRS 293

The following BLAST results are available for this feature:
BLAST of Cmc07g0183141 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046503.14.7e-0645.98Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of Cmc07g0183141 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc07g0183141 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BRV32.3e-0645.98Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of Cmc07g0183141 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0183141.1Cmc07g0183141.1mRNA