Cmc07g0183111 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0183111
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionU-box domain-containing protein 30-like
LocationCMiso1.1chr07: 1755800 .. 1758739 (+)
RNA-Seq ExpressionCmc07g0183111
SyntenyCmc07g0183111
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCTTCATCATCATCTTACAAAGATTTGATTTGATAGGTCAACAAAAAGCTCTACAAAAATTTACAAAGGTGAGACTTCAAAACTCACCTCTTCCCCACTTTGATTGATTCATCCCCAGATGGAAGAAGAAAGAAGGAGAAGAAGAAGAGCACCCTAAATGCAGGAAAAACAGACTTTCATTCTTTCTTCAAAACTCAAGCTAACAAGAATCTTATCTTATCTTATCCACATAAGAATCTATTACTGAGAAGCCATGTTCTAGTCTGTGCTTTCAGATTTTAAATGGCCATTTTTGCTCAGGCTTATTCTTGAAAAATGTCAAAATGCCCACTGCTCCTTATGATAAGCTTTTGTTTTTTGTTTTTCTTTTCTTCAACTGGAAATGGAGCTCTATAGCGATGGTGGTTCTGTATTCCAATTTGGCTGGTTTTTGCCTTTTTTCTTTTTTTCTTCTTCCTTATTGTATTGTTCTTGTAAGCTTACACTTGGATATGAAGAGGGTTGCTGTGTAATTTAAGCTGCAGAGCTTTAGAAGCTCGGCGGAGCGTTGTTTAAGAATAGGGTTGCAACCACTCTGAATCACCAGAAGAAGCTTGGCTGCTAACCCTGCTTCCACAGCTTGGGATGCACATTCTTCAGGGGCAAGTTTACAAACTGACCATAGAATTGATAAAGCCAGCTGAGTGCAGCTCTCTGAGATTCTCATTAATAATTTGACTAAGTTTGGAATGGTGTTGGGGCAATCTTTCAAGGCCACCCTGCCCTCCGAGAGAGATGAGAGTGAGTCCAATACGTGAAGGGCTAGTTCCAAACATTCAGGGTCGAAATTGGGGAGAATTTCGATCAACTGAGGGATTGCGCCAATGCTCACTAATGAGTTCCTCACTGGTTCTTGGGAGCACAGAGCTTTTAGCAATCTTAATCCAGCGAGAACACCATTTTGGTGTTTCTTTTCTTTGATTAATCTCAACAATCCAACCAAGAGACTTAAACTCGAGACAGTGTCCGTTCCACAATCGTCCCCATTGAGCAATGTTTCGATCAATCTAGTGCAGTTGATTTTGGTATCTGTGGATCCCTCGTTTAACATGTCCACCATTAATGAAATCTTAGCAGGTTGAACAAGGTTTCTCCTTGACTCGGCATCAAGATCCAAGTTCACCAAAATCCCAAGTGCTTCAGAGCCAACCGCGTGGGATGTGAAAGGACCCAACAAAGATGAAATCAAAGCAACACCACCATTGTCTTCCACAGTGCTCTTTGCCGAATTCAAAGCTACAACTTGGCGAAGATCCTTCAAAGCTCGGACTCTAGCTTGGCCCTTGACCTTCTTCAATGTATCTAAGAGCTCAAGAGCCCTCCCCTGCACATCCTCAGACCTCTTCTTCATAGCCAAATACTTCTGGGAAAACCAACTGTAAATGAGTTGGTGAAGAGTGTTATTGGGAGTGATCGAATCATCCCAAAGCTCTTGCATTGTGGTGGGACATGTTATATGGCCAAGAGAAAACCATTTCAAGATATTAGATCGTTCATAGGTCTGTCCAGTACAAAGGGTCACAGGATCTCGCATTGGCTCTAATGAAATTGGGCAAATAAACACCGAAGGAACCTCAATGTTCTCAAGCTCCTCCACTATCTCCTTCAGATCCAATTTCTCAGTCATTCCACCCTCACAAATTAACCCACCGCCTCCACCGCCGCCACCGAGAATACCATCTTTCACGGCGGTTTCTACATCAAGAACTTGCCCACCACCACCTAAACCCAGCTCCGTATCATCCTCCCTTCTCCGACCGGAAGGCTGGTACATCGGCATTTTCCAAAACCCTCAAAAGAAGAAAACAAGCTCAAAAGCGAGAAGAAAATTAACCCCAAATCCCTGGAACAGAAAAAAAAAAAAAAAAACACGAACTATTGAATTCACTTTCAGCAACCCAAGATTCAATCATTCAAACACAATGACAGAAAAATACGTGCTAAAATTTCAAAAAAAAAGAAAAGAAAAAAGGAGGGTTCTCTCTTACTTTCTCGTTGTTCCACAATCTTTTTACCATACAGCAATCCTTTGCCTCATTGACAATCACAAGCAGCAGCAAAAATGGGGAATGAGGATATCATTTTCTTCCATTAACTGAACCCTTTCATTAGTCAAAAGAAAGAACACCTTCTTCTTCTTCTTCACCATCGCCCCAATCATCATCAGTAGTAAACCATAAAAGAACCTCAATTCCTCTTCAATCTCCAAAAAAAGAACCAAATCATCAAAAACCCACCAAAATAATAAGCAATCAAAAGCGATTCCACGAATGTAAATCACTCATACTTGAAAACAGTGAACTTTCCTCCCTCAAAAAATTAAAAAAAAAATGTCAGAAGAAATTTTGGAGGATCTAAGACACGAAAGAATGGGAGGCACTGAGAAAGAGGAAAATTAAAAAAAAAAAAATAACAACAATAAAACTTAGAAAGAAAAAGAAAATAAAAAAAAAAACCGAGCTCTACTTCACGGAGTCTCTTCTATAATTCCTATTCTATCATTTGGGTGAATGAATGCAAATCGGAATTCCATTCCAAACCCTCTTTTTCTTTTTCTTTTTTTTCTTTTTTTCTTTTTTGCTTCTCTAATTACCCATAAATTAGTCCAGATTTTTTCTTTTCTTTTACTGCTAGTTACTGGCTATAGCCCGTAGTATTACCGGAAGTCACACGTGTAGCTGTACCTTTTCCCCCTCCTTATCACCGTAATCGCCGGTTTCCTTTTTTCTTTTTTCATAAAGTGTTTTCTTTAATTAATTGTGTTTGTGGGGTTTCCTTTTTCTTCTTTTTCTTTGTTGTGGCCATCCGGTCTGGGCTGGTCCCTCGGTTGGACTTGTGGATGGATGGTCAAATGGTCAACCAAAAATAAAAAGAAATTATTGAATATGTTATTTTATTA

mRNA sequence

GTTCTTCATCATCATCTTACAAAGATTTGATTTGATAGGTCAACAAAAAGCTCTACAAAAATTTACAAAGGTGAGACTTCAAAACTCACCTCTTCCCCACTTTGATTGATTCATCCCCAGATGGAAGAAGAAAGAAGGAGAAGAAGAAGAGCACCCTAAATGCAGGAAAAACAGACTTTCATTCTTTCTTCAAAACTCAAGCTAACAAGAATCTTATCTTATCTTATCCACATAAGAATCTATTACTGAGAAGCCATGTTCTAGTCTGTGCTTTCAGATTTTAAATGGCCATTTTTGCTCAGGCTTATTCTTGAAAAATGTCAAAATGCCCACTGCTCCTTATGATAAGCTTTTGTTTTTTGTTTTTCTTTTCTTCAACTGGAAATGGAGCTCTATAGCGATGGTGGTTCTGTATTCCAATTTGGCTGGTTTTTGCCTTTTTTCTTTTTTTCTTCTTCCTTATTGTATTGTTCTTGTAAGCTTACACTTGGATATGAAGAGGGTTGCTGTGTAATTTAAGCTGCAGAGCTTTAGAAGCTCGGCGGAGCGTTGTTTAAGAATAGGGTTGCAACCACTCTGAATCACCAGAAGAAGCTTGGCTGCTAACCCTGCTTCCACAGCTTGGGATGCACATTCTTCAGGGGCAAGTTTACAAACTGACCATAGAATTGATAAAGCCAGCTGAGTGCAGCTCTCTGAGATTCTCATTAATAATTTGACTAAGTTTGGAATGGTGTTGGGGCAATCTTTCAAGGCCACCCTGCCCTCCGAGAGAGATGAGAGTGAGTCCAATACGTGAAGGGCTAGTTCCAAACATTCAGGGTCGAAATTGGGGAGAATTTCGATCAACTGAGGGATTGCGCCAATGCTCACTAATGAGTTCCTCACTGGTTCTTGGGAGCACAGAGCTTTTAGCAATCTTAATCCAGCGAGAACACCATTTTGGTGTTTCTTTTCTTTGATTAATCTCAACAATCCAACCAAGAGACTTAAACTCGAGACAGTGTCCGTTCCACAATCGTCCCCATTGAGCAATGTTTCGATCAATCTAGTGCAGTTGATTTTGGTATCTGTGGATCCCTCGTTTAACATGTCCACCATTAATGAAATCTTAGCAGGTTGAACAAGGTTTCTCCTTGACTCGGCATCAAGATCCAAGTTCACCAAAATCCCAAGTGCTTCAGAGCCAACCGCGTGGGATGTGAAAGGACCCAACAAAGATGAAATCAAAGCAACACCACCATTGTCTTCCACAGTGCTCTTTGCCGAATTCAAAGCTACAACTTGGCGAAGATCCTTCAAAGCTCGGACTCTAGCTTGGCCCTTGACCTTCTTCAATGTATCTAAGAGCTCAAGAGCCCTCCCCTGCACATCCTCAGACCTCTTCTTCATAGCCAAATACTTCTGGGAAAACCAACTGTAAATGAGTTGGTGAAGAGTGTTATTGGGAGTGATCGAATCATCCCAAAGCTCTTGCATTGTGGTGGGACATGTTATATGGCCAAGAGAAAACCATTTCAAGATATTAGATCGTTCATAGGTCTGTCCAGTACAAAGGGTCACAGGATCTCGCATTGGCTCTAATGAAATTGGGCAAATAAACACCGAAGGAACCTCAATGTTCTCAAGCTCCTCCACTATCTCCTTCAGATCCAATTTCTCAGTCATTCCACCCTCACAAATTAACCCACCGCCTCCACCGCCGCCACCGAGAATACCATCTTTCACGGCGGTTTCTACATCAAGAACTTGCCCACCACCACCTAAACCCAGCTCCGTATCATCCTCCCTTCTCCGACCGGAAGGCTGGTACATCGGCATTTTCCAAAACCCTCAAAAGAAGAAAACAAGCTCAAAAGCGAGAAGAAAATTAACCCCAAATCCCTGGAACAGAAAAAAAAAAAAAAAAACACGAACTATTGAATTCACTTTCAGCAACCCAAGATTCAATCATTCAAACACAATGACAGAAAAATACGTGCTAAAATTTCAAAAAAAAAGAAAAGAAAAAAGGAGGGTTCTCTCTTACTTTCTCGTTGTTCCACAATCTTTTTACCATACAGCAATCCTTTGCCTCATTGACAATCACAAGCAGCAGCAAAAATGGGGAATGAGGATATCATTTTCTTCCATTAACTGAACCCTTTCATTAGTCAAAAGAAAGAACACCTTCTTCTTCTTCTTCACCATCGCCCCAATCATCATCAGTAGTAAACCATAAAAGAACCTCAATTCCTCTTCAATCTCCAAAAAAAGAACCAAATCATCAAAAACCCACCAAAATAATAAGCAATCAAAAGCGATTCCACGAATGTAAATCACTCATACTTGAAAACAGTGAACTTTCCTCCCTCAAAAAATTAAAAAAAAAATGTCAGAAGAAATTTTGGAGGATCTAAGACACGAAAGAATGGGAGGCACTGAGAAAGAGGAAAATTAAAAAAAAAAAAATAACAACAATAAAACTTAGAAAGAAAAAGAAAATAAAAAAAAAAACCGAGCTCTACTTCACGGAGTCTCTTCTATAATTCCTATTCTATCATTTGGGTGAATGAATGCAAATCGGAATTCCATTCCAAACCCTCTTTTTCTTTTTCTTTTTTTTCTTTTTTTCTTTTTTGCTTCTCTAATTACCCATAAATTAGTCCAGATTTTTTCTTTTCTTTTACTGCTAGTTACTGGCTATAGCCCGTAGTATTACCGGAAGTCACACGTGTAGCTGTACCTTTTCCCCCTCCTTATCACCGTAATCGCCGGTTTCCTTTTTTCTTTTTTCATAAAGTGTTTTCTTTAATTAATTGTGTTTGTGGGGTTTCCTTTTTCTTCTTTTTCTTTGTTGTGGCCATCCGGTCTGGGCTGGTCCCTCGGTTGGACTTGTGGATGGATGGTCAAATGGTCAACCAAAAATAAAAAGAAATTATTGAATATGTTATTTTATTA

Coding sequence (CDS)

ATGTTCTCAAGCTCCTCCACTATCTCCTTCAGATCCAATTTCTCAGTCATTCCACCCTCACAAATTAACCCACCGCCTCCACCGCCGCCACCGAGAATACCATCTTTCACGGCGGTTTCTACATCAAGAACTTGCCCACCACCACCTAAACCCAGCTCCGTATCATCCTCCCTTCTCCGACCGGAAGGCTGGTACATCGGCATTTTCCAAAACCCTCAAAAGAAGAAAACAAGCTCAAAAGCGAGAAGAAAATTAACCCCAAATCCCTGGAACAGAAAAAAAAAAAAAAAAACACGAACTATTGAATTCACTTTCAGCAACCCAAGATTCAATCATTCAAACACAATGACAGAAAAATACGTGCTAAAATTTCAAAAAAAAAGAAAAGAAAAAAGGAGGGTTCTCTCTTACTTTCTCGTTGTTCCACAATCTTTTTACCATACAGCAATCCTTTGCCTCATTGACAATCACAAGCAGCAGCAAAAATGGGGAATGAGGATATCATTTTCTTCCATTAACTGA

Protein sequence

MFSSSSTISFRSNFSVIPPSQINPPPPPPPPRIPSFTAVSTSRTCPPPPKPSSVSSSLLRPEGWYIGIFQNPQKKKTSSKARRKLTPNPWNRKKKKKTRTIEFTFSNPRFNHSNTMTEKYVLKFQKKRKEKRRVLSYFLVVPQSFYHTAILCLIDNHKQQQKWGMRISFSSIN
Homology
[Close]
BLAST of Cmc07g0183111 vs. NCBI nr
Match: KAB2627667.1 (U-box domain-containing protein 30-like [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-08
Identity = 49/112 (43.75%), Postives = 60/112 (53.57%), Query Frame = 0 

Query: 1   MFSSSSTISFRSNFSVIPPSQINPPP--PPPPPRIPSFTAVSTSRTCPPPPKPSSVSSSL 60
           M SSSS I FRSN S   P+   PP   PPPPP+IPSFTAVS SRTCPP P  + +S  L
Sbjct: 1   MDSSSSIIFFRSNLSATTPTPTPPPQINPPPPPKIPSFTAVSRSRTCPPLPASNFISPQL 60

Query: 61  L-RPEGWYIGIFQNPQKKKTSSKARRKLTPNPWNRKKKKKTRTIEFTFSNPR 110
           L  PEGWY   ++ P               N    + K++    +F F+ PR
Sbjct: 61  LFHPEGWYTNNYKTP------------FPTNQEQNQPKQQLSISDFNFNTPR 100

[Close]
BLAST of Cmc07g0183111 vs. ExPASy TrEMBL
Match: A0A5N5HLH1 (U-box domain-containing protein 30-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_032462 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 49/112 (43.75%), Postives = 60/112 (53.57%), Query Frame = 0 

Query: 1   MFSSSSTISFRSNFSVIPPSQINPPP--PPPPPRIPSFTAVSTSRTCPPPPKPSSVSSSL 60
           M SSSS I FRSN S   P+   PP   PPPPP+IPSFTAVS SRTCPP P  + +S  L
Sbjct: 1   MDSSSSIIFFRSNLSATTPTPTPPPQINPPPPPKIPSFTAVSRSRTCPPLPASNFISPQL 60

Query: 61  L-RPEGWYIGIFQNPQKKKTSSKARRKLTPNPWNRKKKKKTRTIEFTFSNPR 110
           L  PEGWY   ++ P               N    + K++    +F F+ PR
Sbjct: 61  LFHPEGWYTNNYKTP------------FPTNQEQNQPKQQLSISDFNFNTPR 100

The following BLAST results are available for this feature:
BLAST of Cmc07g0183111 vs. NCBI nr
Match NameE-valueIdentityDescription
KAB2627667.14.8e-0843.75U-box domain-containing protein 30-like [Pyrus ussuriensis x Pyrus communis][more]
BLAST of Cmc07g0183111 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc07g0183111 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N5HLH12.3e-0843.75U-box domain-containing protein 30-like OS=Pyrus ussuriensis x Pyrus communis OX... [more]
BLAST of Cmc07g0183111 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0183111.1Cmc07g0183111.1mRNA