Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCCATACACTTTCTCCACCGAAAAGAATGACAGAACTTAGCACATAAAACGAACAAAAAGTCCTTTTGGCACGATCATTTCACGAGCTCCCATCATACCTCCAAACTAAATCCCAACCCAACAATAGTGTTCTTCCTTTAGTTCTTCGTTTAGTTCTTCCAACAAACCACTTTCTTTTCTCATCAGCAGTTCCTTCGATGTGTCATTCCAAATCGACGCCGTTTCCAGGAACAAGGCGAATTCTTGGCTCTTTGGGGCTTTGCATTGTCGCATTCGCTTTCTTTTCAGCATCATCCAAAGCCCAAATGGCTGTCCCCTCCACCGGACAGCTCTGCATCAGCGACTGCTCCACGTGTCCGGTGGTTTGTACGGCGCCTCCTCCTCCTCCACGCTCTTTCATTCCGGCTCCGCCCAACTTTTACGGTGGGTACAATATGGCCCCGCCGGCTACTCCGTCGTATTATTTATGGGGTCCGCCGCCTCCGGTTACAAATTATTTTATGGGCGCACGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTATAGTTCAAATTCGGGTTCGTTCTCTTGTATTTCGAAGTTCATTGTGTTGTTTGTGTGTTTGCTTCATTTTGTTTTGTGATGGCGTTGACAAGAACCTGACGGATTGTTGTTGTTGAATGGCTTGTGTTTTGGGGACTTGATCAATTGTTTTGTAACATTTTGATGTTTTCTTTCGGTTAGGTCTTTGCTTTAACCGATTAAGCGGTTCCTGTAGGTAAAAGTGACGTATCGTTGTTGATCGGTTAGTTCGAATCTTCTACTAGTATTTGTAATGATAAAAAAAAAAGGAGAAACTATAGATTGATAGAGACTGCATGAGAGTAAGTTAATTGTATAAATATTTCAAAATTTGTAT
mRNA sequence
TTTTTCCATACACTTTCTCCACCGAAAAGAATGACAGAACTTAGCACATAAAACGAACAAAAAGTCCTTTTGGCACGATCATTTCACGAGCTCCCATCATACCTCCAAACTAAATCCCAACCCAACAATAGTGTTCTTCCTTTAGTTCTTCGTTTAGTTCTTCCAACAAACCACTTTCTTTTCTCATCAGCAGTTCCTTCGATGTGTCATTCCAAATCGACGCCGTTTCCAGGAACAAGGCGAATTCTTGGCTCTTTGGGGCTTTGCATTGTCGCATTCGCTTTCTTTTCAGCATCATCCAAAGCCCAAATGGCTGTCCCCTCCACCGGACAGCTCTGCATCAGCGACTGCTCCACGTGTCCGGTGGTTTGTACGGCGCCTCCTCCTCCTCCACGCTCTTTCATTCCGGCTCCGCCCAACTTTTACGGTGGGTACAATATGGCCCCGCCGGCTACTCCGTCGTATTATTTATGGGGTCCGCCGCCTCCGGTTACAAATTATTTTATGGGCGCACGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTATAGTTCAAATTCGGGTTCGTTCTCTTGTATTTCGAAGTTCATTGTGTTGTTTGTGTGTTTGCTTCATTTTGTTTTGTGATGGCGTTGACAAGAACCTGACGGATTGTTGTTGTTGAATGGCTTGTGTTTTGGGGACTTGATCAATTGTTTTGTAACATTTTGATGTTTTCTTTCGGTTAGGTCTTTGCTTTAACCGATTAAGCGGTTCCTGTAGGTAAAAGTGACGTATCGTTGTTGATCGGTTAGTTCGAATCTTCTACTAGTATTTGTAATGATAAAAAAAAAAGGAGAAACTATAGATTGATAGAGACTGCATGAGAGTAAGTTAATTGTATAAATATTTCAAAATTTGTAT
Coding sequence (CDS)
ATGTGTCATTCCAAATCGACGCCGTTTCCAGGAACAAGGCGAATTCTTGGCTCTTTGGGGCTTTGCATTGTCGCATTCGCTTTCTTTTCAGCATCATCCAAAGCCCAAATGGCTGTCCCCTCCACCGGACAGCTCTGCATCAGCGACTGCTCCACGTGTCCGGTGGTTTGTACGGCGCCTCCTCCTCCTCCACGCTCTTTCATTCCGGCTCCGCCCAACTTTTACGGTGGGTACAATATGGCCCCGCCGGCTACTCCGTCGTATTATTTATGGGGTCCGCCGCCTCCGGTTACAAATTATTTTATGGGCGCACGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTATAGTTCAAATTCGGGTTCGTTCTCTTGTATTTCGAAGTTCATTGTGTTGTTTGTGTGTTTGCTTCATTTTGTTTTGTGA
Protein sequence
MCHSKSTPFPGTRRILGSLGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPPPPPRSFIPAPPNFYGGYNMAPPATPSYYLWGPPPPVTNYFMGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFSCISKFIVLFVCLLHFVL
Homology
BLAST of Cmc07g0182441 vs. NCBI nr
Match:
KAE8649911.1 (hypothetical protein Csa_012510 [Cucumis sativus])
HSP 1 Score: 234.6 bits (597), Expect = 5.8e-58
Identity = 110/124 (88.71%), Postives = 113/124 (91.13%), Query Frame = 0
Query: 8 PFPGTRRILGSLGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPPPPPRSF 67
PFPGTRRILGS GL IVAF FSASSKAQMAVPSTGQLCISDCSTCPV+CTAPPPP
Sbjct: 2 PFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYI 61
Query: 68 IPAPPNFYGGYNMAPPATPSYYLWGPPPPVTNYFMGARPSGEMPQTVGPRDYSYPYYYFY 127
P PPNFYGG+NMAPPATPSYYLWGPPPPV NYF+GARPSGEMPQTVGPRDYSYPYYYFY
Sbjct: 62 PPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFY 121
Query: 128 SSNS 132
SSNS
Sbjct: 122 SSNS 125
BLAST of Cmc07g0182441 vs. NCBI nr
Match:
XP_022981722.1 (leucine-rich repeat extensin-like protein 1 [Cucurbita maxima])
HSP 1 Score: 178.7 bits (452), Expect = 3.7e-41
Identity = 96/154 (62.34%), Postives = 106/154 (68.83%), Query Frame = 0
Query: 8 PFPGTRRILGSLGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPPPPP--- 67
PF G R SLGLC++A A F S AQ+ VPST QLCIS C TCPVVCT P P P
Sbjct: 2 PFQGKMRFSTSLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPTPR 61
Query: 68 --RSFIPA----PPNFYGGYNMAPPA-TPSYYLWGPPPPVTNYFMGARPSGEMPQTVGPR 127
S+IP+ PP FYGGY PPA T SY+ GPPPPV NY GA+PSG+MPQTVGPR
Sbjct: 62 SYSSYIPSPPPPPPAFYGGYMGPPPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGPR 121
Query: 128 DYSYPYYYFYSSNSGSFSCISKFIVLFVCLLHFV 152
DYSYPYYYFYSSN GSF+ S FI+LF C H V
Sbjct: 122 DYSYPYYYFYSSNLGSFASPSTFILLFACFFHVV 155
BLAST of Cmc07g0182441 vs. NCBI nr
Match:
KAG6608366.1 (Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 93/143 (65.03%), Postives = 100/143 (69.93%), Query Frame = 0
Query: 8 PFPGTRRILGSLGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPPPPPRSF 67
PF G SLGL ++A A F S AQ+ VPSTGQLCIS C TCPVVCT P PRS+
Sbjct: 2 PFQGKMPFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTT--PTPRSY 61
Query: 68 ----IPAPPNFYGGYNMAPPA-TPSYYLWGPPPPVTNYFMGARPSGEMPQTVGPRDYSYP 127
P PP FYGGY PPA T SY+L GPPPPV NY GA+PSG+MPQTVGPRDYSYP
Sbjct: 62 NTYIPPPPPAFYGGYMGPPPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYP 121
Query: 128 YYYFYSSNSGSFSCISKFIVLFV 146
YYYFYSSN GS S S FIVL V
Sbjct: 122 YYYFYSSNLGSSSSPSTFIVLAV 142
BLAST of Cmc07g0182441 vs. NCBI nr
Match:
XP_022940707.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])
HSP 1 Score: 164.1 bits (414), Expect = 9.6e-37
Identity = 91/141 (64.54%), Postives = 98/141 (69.50%), Query Frame = 0
Query: 8 PFPGTRRILGSLGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPPPPPRSF 67
PF G R SLGL ++A A F S AQ+ VPSTGQLCIS C TCPVVCT P PRS+
Sbjct: 2 PFQGKMRFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTT--PTPRSY 61
Query: 68 ----IPAPPNFYGGYNMAPPA-TPSYYLWGPPPPVTNYFMGARPSGEMPQTVGPRDYSYP 127
P PP FYGGY PPA T SY+L GP PPV NY GA+PSG+MPQTVGPRDYSYP
Sbjct: 62 NTYIPPPPPAFYGGYMGPPPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYSYP 121
Query: 128 YYYFYSSNSGSFSCISKFIVL 144
YYYFYSSN GS S FIVL
Sbjct: 122 YYYFYSSNLGSSSSPPTFIVL 140
BLAST of Cmc07g0182441 vs. NCBI nr
Match:
XP_023523402.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 162.5 bits (410), Expect = 2.8e-36
Identity = 90/136 (66.18%), Postives = 95/136 (69.85%), Query Frame = 0
Query: 24 VAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPPP-------PPRSFIPAPPNFYG 83
+A A F S AQ+ VPSTGQLCIS C TCPVVCT P P PP P PP FYG
Sbjct: 1 MAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYNTYIPPP---PPPPAFYG 60
Query: 84 GYNMAPPA-TPSYYLWGPPPPVTNYFMGARPSGEMPQTVGPRDYSYPYYYFYSSNSGSFS 143
GY PPA T SY+L GPPPPV NY GA+PSG+MPQTVGPRDYSYPYYYFYSSN GS S
Sbjct: 61 GYMGPPPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYPYYYFYSSNLGSSS 120
Query: 144 CISKFIVLFVCLLHFV 152
S FIVLFVC H V
Sbjct: 121 SPSTFIVLFVCFFHVV 133
BLAST of Cmc07g0182441 vs. ExPASy TrEMBL
Match:
A0A0A0L054 (Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240 PE=4 SV=1)
HSP 1 Score: 280.0 bits (715), Expect = 5.8e-72
Identity = 134/152 (88.16%), Postives = 139/152 (91.45%), Query Frame = 0
Query: 1 MCHSKSTPFPGTRRILGSLGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAP 60
MCHSK+ PFPGTRRILGS GL IVAF FSASSKAQMAVPSTGQLCISDCSTCPV+CTAP
Sbjct: 33 MCHSKTMPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP 92
Query: 61 PPPPRSFIPAPPNFYGGYNMAPPATPSYYLWGPPPPVTNYFMGARPSGEMPQTVGPRDYS 120
PPP P PPNFYGG+NMAPPATPSYYLWGPPPPV NYF+GARPSGEMPQTVGPRDYS
Sbjct: 93 PPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYS 152
Query: 121 YPYYYFYSSNSGSFSCISKFIVLFVCLLHFVL 153
YPYYYFYSSNSGSF+ ISKFIVLFVCLLHFVL
Sbjct: 153 YPYYYFYSSNSGSFTYISKFIVLFVCLLHFVL 184
BLAST of Cmc07g0182441 vs. ExPASy TrEMBL
Match:
A0A6J1IUS7 (leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111480787 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 96/154 (62.34%), Postives = 106/154 (68.83%), Query Frame = 0
Query: 8 PFPGTRRILGSLGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPPPPP--- 67
PF G R SLGLC++A A F S AQ+ VPST QLCIS C TCPVVCT P P P
Sbjct: 2 PFQGKMRFSTSLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPTPR 61
Query: 68 --RSFIPA----PPNFYGGYNMAPPA-TPSYYLWGPPPPVTNYFMGARPSGEMPQTVGPR 127
S+IP+ PP FYGGY PPA T SY+ GPPPPV NY GA+PSG+MPQTVGPR
Sbjct: 62 SYSSYIPSPPPPPPAFYGGYMGPPPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGPR 121
Query: 128 DYSYPYYYFYSSNSGSFSCISKFIVLFVCLLHFV 152
DYSYPYYYFYSSN GSF+ S FI+LF C H V
Sbjct: 122 DYSYPYYYFYSSNLGSFASPSTFILLFACFFHVV 155
BLAST of Cmc07g0182441 vs. ExPASy TrEMBL
Match:
A0A6J1FKD3 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111446222 PE=4 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 4.6e-37
Identity = 91/141 (64.54%), Postives = 98/141 (69.50%), Query Frame = 0
Query: 8 PFPGTRRILGSLGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPPPPPRSF 67
PF G R SLGL ++A A F S AQ+ VPSTGQLCIS C TCPVVCT P PRS+
Sbjct: 2 PFQGKMRFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTT--PTPRSY 61
Query: 68 ----IPAPPNFYGGYNMAPPA-TPSYYLWGPPPPVTNYFMGARPSGEMPQTVGPRDYSYP 127
P PP FYGGY PPA T SY+L GP PPV NY GA+PSG+MPQTVGPRDYSYP
Sbjct: 62 NTYIPPPPPAFYGGYMGPPPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYSYP 121
Query: 128 YYYFYSSNSGSFSCISKFIVL 144
YYYFYSSN GS S FIVL
Sbjct: 122 YYYFYSSNLGSSSSPPTFIVL 140
BLAST of Cmc07g0182441 vs. ExPASy TrEMBL
Match:
A0A5N6RNK5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017980 PE=4 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 6.3e-18
Identity = 70/164 (42.68%), Postives = 90/164 (54.88%), Query Frame = 0
Query: 9 FPGTRRILGSLGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPPPP-PRSF 68
FP RI G +GL + F +S Q+ PST +LCISDC+TCPV+C+ PPPP +SF
Sbjct: 17 FPRFLRI-GIMGLLM----FAGMTSADQIKAPSTSELCISDCATCPVICSPPPPPLLKSF 76
Query: 69 IPAPPNFYGGYNMAPP-----------ATP----SYYLWG-PPPPVTNYFMGARPSG--- 128
P P+ + PP ATP Y WG PPPP Y+ PSG
Sbjct: 77 PPPSPSAHHSSPSPPPLLKPFPPPSPAATPPEAAPYTSWGSPPPPPFKYYNNMPPSGPVT 136
Query: 129 EMPQTVG-PRDYSYPYYYFYSSNSGSFSCISKFIVLFVCLLHFV 152
+P T G PRDY YPYYYFY+S++ S S + F+ + + L HFV
Sbjct: 137 PVPPTGGVPRDYPYPYYYFYASHAPSLSLDASFVFMLLFLFHFV 175
BLAST of Cmc07g0182441 vs. ExPASy TrEMBL
Match:
A0A2N9HA71 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 2.4e-17
Identity = 60/150 (40.00%), Postives = 78/150 (52.00%), Query Frame = 0
Query: 30 SASSKAQMAVPSTGQLCISDCSTCPVVCTAPPP----------------PPRSFI----- 89
+ +S+ Q+ PS+G LCISDC+TCPV+C+ PPP PP+S+
Sbjct: 30 NVTSEDQIGSPSSGSLCISDCATCPVICSPPPPLQESYSPPSPPVQHHSPPKSYYANPPP 89
Query: 90 -PAPPNFYGGYNMAPPATPSYYLWGPPPPVTNYFMGARPSG----EMPQTVGPRDYSYPY 149
P+PP+ +PP SY WG PPP YF PSG MP GP DY YPY
Sbjct: 90 PPSPPSSLTPPPASPPKASSYSSWGTPPPPFMYFNNMPPSGNINNRMPPMAGPHDYPYPY 149
Query: 150 YYFYSSNSGSFSCI--SKFIVLFVCLLHFV 152
YYFYSS + S + S + + + L HFV
Sbjct: 150 YYFYSSKAASSLSLDASFYYFMLLFLFHFV 179
BLAST of Cmc07g0182441 vs. TAIR 10
Match:
AT5G11990.1 (proline-rich family protein )
HSP 1 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 45/165 (27.27%), Postives = 71/165 (43.03%), Query Frame = 0
Query: 19 LGLCIVAFAFFSASSKAQMAVPSTGQLCISDCSTCPVVCTAPP--------PPPRSFIP- 78
+ L +V S S + + P LCIS+CSTCP +C+ PP PPP +P
Sbjct: 8 IALVMVMVVASSPSDQTNVLTP----LCISECSTCPTICSPPPSKPSPSMSPPPSPSLPL 67
Query: 79 ------------APPNFYGGYNMAP------PATPSYYLW---GPPPPVTNYFMGARPS- 138
+PP + P P P +Y + PPPP++ G+ PS
Sbjct: 68 SSSPPPPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYFESTPPPPPLSPDGKGSPPSV 127
Query: 139 -----GEMPQTVGPRD--YSYPYYYFYSSNSGSFSCISKFIVLFV 146
Q+ G + Y +PY+YFY++++ + S F++ V
Sbjct: 128 PSSPPSPKGQSQGQQQPPYPFPYFYFYTASNATLLFSSSFLIALV 168
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8649911.1 | 5.8e-58 | 88.71 | hypothetical protein Csa_012510 [Cucumis sativus] | [more] |
| XP_022981722.1 | 3.7e-41 | 62.34 | leucine-rich repeat extensin-like protein 1 [Cucurbita maxima] | [more] |
| KAG6608366.1 | 1.9e-37 | 65.03 | Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma su... | [more] |
| XP_022940707.1 | 9.6e-37 | 64.54 | leucine-rich repeat extensin-like protein 2 [Cucurbita moschata] | [more] |
| XP_023523402.1 | 2.8e-36 | 66.18 | leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L054 | 5.8e-72 | 88.16 | Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240... | [more] |
| A0A6J1IUS7 | 1.8e-41 | 62.34 | leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11... | [more] |
| A0A6J1FKD3 | 4.6e-37 | 64.54 | leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC... | [more] |
| A0A5N6RNK5 | 6.3e-18 | 42.68 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017980 PE=4 SV=1 | [more] |
| A0A2N9HA71 | 2.4e-17 | 40.00 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G11990.1 | 3.2e-06 | 27.27 | proline-rich family protein | [more] |
