Cmc07g0181691 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0181691
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptioneukaryotic translation initiation factor-like
LocationCMiso1.1chr07: 882613 .. 883489 (-)
RNA-Seq ExpressionCmc07g0181691
SyntenyCmc07g0181691
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAGAATAACGGCAACAATAAGGGTTTCTTTGGTGCTCGCGTTTCTCCTCACTCACCCCATTTTCTCTTTGCAGCTGCGAAGAGATACAGAGAAAGAGAGAGACGCAGGTAGAGATAGAATCCCACTCTGTCTCTATCTGTCGAAATTAATCTCCAAAATCCAACATCCTCCATTTCCAATCCTTTCTTTTTTCTCCGCCTCCATCGATTCTTCCTCTCTCTAAATCTACCTTTTTTTTTCCTTCTCTCATCCCTCTCTGTTCCGCTCAACAATCGGATTGCATCGCTGGAGTTATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCCTTCGTGGAAGCAGATTTGTTACCCCTCGCTTCGATTCATCCTCCGCCGACTCTTCGTCTCTTCGTCCACATGGCGGCGTTTCTTCAATCCTCAAGGTCGAATTTTATCACTTTTTATTTTATAAATAGAGTTAGGGATATGGTTTTTTTGGTATATGTATATGTGTACGGATTACTTTTTGGGGTTTTTATGGTGTCTATGTGTTATTTTTATTGATTTGGATGCGTGGATTTGTTTTCATAGATCTGGAATCTACGAAAGTGTTATCTTTTTCCCGTTTTGAGGTTCTTTTCACTGTGGGTTTTACCTTCCTGTTGTTGACGTCTCTTTGTTTTTTTTCAACTATCCTGATTGGAGTGCCAATTGGGATCAGCTTGGAATTGTTAAATTTTGAGGAATGTTTGGTTATCCCTGGTTATTGGCTGACGTCTTTTTGCACTCTGAATGTTAACGAATTTAGTTGATATCAGATTGTAACCTATAGGGTTTATGTTGATGGTCGTGAGTTTTTTTTTTCTATAAAGTGA

mRNA sequence

GAAAAAAGAATAACGGCAACAATAAGGGTTTCTTTGGTGCTCGCGTTTCTCCTCACTCACCCCATTTTCTCTTTGCAGCTGCGAAGAGATACAGAGAAAGAGAGAGACGCAGGTAGAGATAGAATCCCACTCTGTCTCTATCTGTCGAAATTAATCTCCAAAATCCAACATCCTCCATTTCCAATCCTTTCTTTTTTCTCCGCCTCCATCGATTCTTCCTCTCTCTAAATCTACCTTTTTTTTTCCTTCTCTCATCCCTCTCTGTTCCGCTCAACAATCGGATTGCATCGCTGGAGTTATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCCTTCGTGGAAGCAGATTTGTTACCCCTCGCTTCGATTCATCCTCCGCCGACTCTTCGTCTCTTCGTCCACATGGCGGCGTTTCTTCAATCCTCAAGTGA

Coding sequence (CDS)

ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCCTTCGTGGAAGCAGATTTGTTACCCCTCGCTTCGATTCATCCTCCGCCGACTCTTCGTCTCTTCGTCCACATGGCGGCGTTTCTTCAATCCTCAAGTGA

Protein sequence

MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK
Homology
[Close]
BLAST of Cmc07g0181691 vs. NCBI nr
Match: XP_038897670.1 (eukaryotic translation initiation factor-like isoform X2 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. NCBI nr
Match: XP_022976986.1 (eukaryotic translation initiation factor-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. NCBI nr
Match: KAG7024411.1 (hypothetical protein SDJN02_13225 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. NCBI nr
Match: XP_023535531.1 (eukaryotic translation initiation factor-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. NCBI nr
Match: XP_004145494.1 (eukaryotic translation initiation factor [Cucumis sativus] >KGN55419.1 hypothetical protein Csa_012483 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. ExPASy Swiss-Prot
Match: Q03387 (Eukaryotic translation initiation factor isoform 4G-1 OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 9.4e-05
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 0 

Query: 1  MQADQTVISLRP-GGGGGLRGSRFVTPRFD-SSSADSSSLRPHGGVSS 47
          M  DQ VISLRP GGGGG RG R   P F  ++S     LRPHGG +S
Sbjct: 1  MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGAS 48

[Close]
BLAST of Cmc07g0181691 vs. ExPASy Swiss-Prot
Match: Q41583 (Eukaryotic translation initiation factor isoform 4G-2 OS=Triticum aestivum OX=4565 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-04
Identity = 26/45 (57.78%), Postives = 28/45 (62.22%), Query Frame = 0 

Query: 1  MQADQTVISLRP-GGGGGLRGSRFVTPRFD-SSSADSSSLRPHGG 44
          M  DQ VISLRP GGGGG RG R   P F  ++S     LRPHGG
Sbjct: 1  MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGG 45

[Close]
BLAST of Cmc07g0181691 vs. ExPASy Swiss-Prot
Match: Q6K641 (Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0611500 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.6e-04
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 2  QADQTVISLRPGGGGGLRGSRFVTP-RFDSSSADSSSLRPHGGVSS 47
          QADQ VISLRPGGGGG+ G R      F +S+     LRP GG SS
Sbjct: 3  QADQAVISLRPGGGGGIGGPRAGRLFPFGASTGSLDFLRPRGGASS 48

[Close]
BLAST of Cmc07g0181691 vs. ExPASy TrEMBL
Match: A0A5D3D8X5 (Eukaryotic translation initiation factor-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001350 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. ExPASy TrEMBL
Match: A0A6J1IL03 (eukaryotic translation initiation factor-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477187 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. ExPASy TrEMBL
Match: A0A6J1IIF2 (eukaryotic translation initiation factor-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477187 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. ExPASy TrEMBL
Match: A0A0A0L311 (MI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G651850 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. ExPASy TrEMBL
Match: A0A1S3BU84 (eukaryotic translation initiation factor-like OS=Cucumis melo OX=3656 GN=LOC103493739 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVSSILK 50
          MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGV+SILK
Sbjct: 1  MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILK 49

[Close]
BLAST of Cmc07g0181691 vs. TAIR 10
Match: AT5G57870.1 (MIF4G domain-containing protein / MA3 domain-containing protein )

HSP 1 Score: 40.4 bits (93), Expect = 4.8e-04
Identity = 26/47 (55.32%), Postives = 29/47 (61.70%), Query Frame = 0 

Query: 2  QADQTVISLRPGGGGGLR----GSRFVTPRFDS-SSADSSSLRPHGG 44
          Q DQTV+SLRPGGG G R     S   +  F S SS+D   LRPHGG
Sbjct: 3  QGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGG 49

[Close]
BLAST of Cmc07g0181691 vs. TAIR 10
Match: AT5G57870.2 (MIF4G domain-containing protein / MA3 domain-containing protein )

HSP 1 Score: 40.4 bits (93), Expect = 4.8e-04
Identity = 26/47 (55.32%), Postives = 29/47 (61.70%), Query Frame = 0 

Query: 2  QADQTVISLRPGGGGGLR----GSRFVTPRFDS-SSADSSSLRPHGG 44
          Q DQTV+SLRPGGG G R     S   +  F S SS+D   LRPHGG
Sbjct: 3  QGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGG 49

The following BLAST results are available for this feature:
BLAST of Cmc07g0181691 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897670.13.5e-1797.96eukaryotic translation initiation factor-like isoform X2 [Benincasa hispida][more]
XP_022976986.13.5e-1797.96eukaryotic translation initiation factor-like isoform X2 [Cucurbita maxima][more]
KAG7024411.13.5e-1797.96hypothetical protein SDJN02_13225 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023535531.13.5e-1797.96eukaryotic translation initiation factor-like isoform X2 [Cucurbita pepo subsp. ... [more]
XP_004145494.13.5e-1797.96eukaryotic translation initiation factor [Cucumis sativus] >KGN55419.1 hypotheti... [more]
BLAST of Cmc07g0181691 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q033879.4e-0556.25Eukaryotic translation initiation factor isoform 4G-1 OS=Triticum aestivum OX=45... [more]
Q415831.2e-0457.78Eukaryotic translation initiation factor isoform 4G-2 OS=Triticum aestivum OX=45... [more]
Q6K6413.6e-0456.52Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. jap... [more]
BLAST of Cmc07g0181691 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D8X51.7e-1797.96Eukaryotic translation initiation factor-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A6J1IL031.7e-1797.96eukaryotic translation initiation factor-like isoform X1 OS=Cucurbita maxima OX=... [more]
A0A6J1IIF21.7e-1797.96eukaryotic translation initiation factor-like isoform X2 OS=Cucurbita maxima OX=... [more]
A0A0A0L3111.7e-1797.96MI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G651850 PE=4 SV=... [more]
A0A1S3BU841.7e-1797.96eukaryotic translation initiation factor-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
BLAST of Cmc07g0181691 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G57870.14.8e-0455.32MIF4G domain-containing protein / MA3 domain-containing protein [more]
AT5G57870.24.8e-0455.32MIF4G domain-containing protein / MA3 domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0181691.1Cmc07g0181691.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0016281 eukaryotic translation initiation factor 4F complex
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003743 translation initiation factor activity