Cmc07g0180421 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0180421
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	splicing factor U2af small subunit B-like
Location	CMiso1.1chr07: 172152 .. 174926 (+)
RNA-Seq Expression	Cmc07g0180421
Synteny	Cmc07g0180421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAATAATAACAATATAATTAATTTAAAAAAAAAAATGAAGACAATAAAAATAAAAATAACATGTCTGCTATGCGAAAACATAACCAAGACCTTTCCCAAGTTCTTCATTCTCGAATTACGTATCTGGGATCCATTCCTCCAATTTAGGGTTTTTTCTTCTGCTCTTCTACTTTTCTCCTGGAAGTTCTAATACAGCTATCGGTTCCGTTTTTCCTTTAAATTTCTAATTTGAATTCCACTTCTTCTTCGTCGAAATCCTTTCAACCAGCTCGACAATTGTTGCTGAAATCTCTCTCGTCTGATCTCAAATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCTTGCCGACATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTCCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTTGAAGATTTCTACGAAGACATTTACGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGCGATAATCTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAAGAGGACCAGGCTGCCGCCGCACTCCAAGCGTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCGGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGCTATTCGGTAGGTACCGGGGATATAGGCCCAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGAGAACGTGAGTATCGCGGAAATGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACATGGTAGCCCCAGACGAAGCCGAAGCAGAAGCCCCGTCATTGCGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGACGTCTTCGTATTTTTTTCTTTCTATTTTGGTAATTGTTCTGTGCTCTCTCTGTCATTTAATTATGTACCTTACCCTTACTCACACCACATATTTCTGCCTGAATAGGAAGTAGAAATCTTTTCTAGACAAAGCCGTGGATGTGATATCAAGTAGAGTAGCCTTTTTGGTTAACTTTCTAGACGATATTGTCGGATGTGATCTCTTAACTATTTCTATCTCCACTTCATCATCCATATGCTTTAACTTGTGCCTCATCTTACCCATTAAAACCCATCACTTCCTATCCACTCGCCTGCTTGAGCTTACGACCCAGGCATGAACAAGATGGGAAATTCATTGAGTGTGCTATGCAAATCGATGATTGTTGAATATGGCATCTATCTGTGTATTGCCTCGTTACTTCCATAGCTAACTAGTCTATTTGTACAACAGCAATGATTTGAGTCATTGTGTTAGTTATTATAGTTAATGAGCTACAGTAGCTTCGTGTGCAAACTATCTTAGGATAGTTATTATAATTCATGTTTGAGTTGCAAAATCATACACGGAAGCAGAGAGGGTATTTGAAATAGTAATGTCATAGTTAATTGTAGATCACAATCGTTAAAAACACCTATTACTGTAATTGGAGCACTAAACATGGGTGGGTTGTAATAGCCCACCCTTCAAGCTCAAGTCAGTAAGGTTGTACATCATAGTGGAATTGAACAAATTATGGCCTTGGGTTTTCAAAGTACTAGATAAGAAATGAAGGAGTTAAGGTGAGCGTAATTACTCATTTGTTTGTTGTACTAAAAAAGAAACGGAGGAAACAGGACAGTGATGGCTTTGTGAATGAGGGAGAGGGAGAGGAAGATTGCCATGGCCATGGAAACACGAAACAAATCCTTCACAAGTACCGGAGTTTGGAGGGCTTGACTAACAAGGACTTATTGAACGTGGATCTACCCATTTCCCTGCGTTCAACCAGAGGCATTGTCGATTTCTTTCTATGTTAATTCGTTCTTCTTGCCAAGGAGCTTATCTTGATTTGAGTATGCCTAATACTGGTGGCTTATTAATTATTTGCTGCTCATATCTGAATTTCTTTCTTGTGCTGGGTGTTTGTCTTGGCTTGGCTGCAGATTAACTAAGAATGTTTCTGTCCAAAATGTATTTTATTACTGGCAAGCCAATAGATTTTCACTGGACAGGGTTTTGTTGAAGTTCGAACGGAAGAGTTCAAATTTTTGATGAGGAAGCTTTAGTGTACAGGAGGAGTTAAAGGACACAAATGTTGTTAGTCTCCGTTTAATAGGCCTCCTAAATTCTCAATTTTTATTCTTCAACTTTACTCGTGGATTTATTTTTTTCAACTAAAATATATATGTATTTACTAGTTTAGTATTGTTTTTATGTCTCACGTTTGTATTTTGAAGTTTGAACATCTAAGGTGTTTTGGTTTGTCATCAGATCAGGCTTGCAAGGTCTAAGTGTGGTTGGCATTAATGTTCAATTTCTCTTAATATTACTTTCTCGGATGAGAGAGAATTAATTATGTATCTTACACTCTTATTTTATTTTGTTTCTTTCTGTGAAAAATTGTATCTCACTTTTATTATCGAAGAAAATAATTAAATTTCATATTTCAAC

mRNA sequence

GGAAAATAATAACAATATAATTAATTTAAAAAAAAAAATGAAGACAATAAAAATAAAAATAACATGTCTGCTATGCGAAAACATAACCAAGACCTTTCCCAAGTTCTTCATTCTCGAATTACGTATCTGGGATCCATTCCTCCAATTTAGGGTTTTTTCTTCTGCTCTTCTACTTTTCTCCTGGAAGTTCTAATACAGCTATCGGTTCCGTTTTTCCTTTAAATTTCTAATTTGAATTCCACTTCTTCTTCGTCGAAATCCTTTCAACCAGCTCGACAATTGTTGCTGAAATCTCTCTCGTCTGATCTCAAATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCTTGCCGACATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTCCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTTGAAGATTTCTACGAAGACATTTACGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGCGATAATCTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAAGAGGACCAGGCTGCCGCCGCACTCCAAGCGTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCGGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGCTATTCGGTAGGTACCGGGGATATAGGCCCAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGAGAACGTGAGTATCGCGGAAATGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACATGGTAGCCCCAGACGAAGCCGAAGCAGAAGCCCCGTCATTGCGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGACGTCTTCGTATTTTTTTCTTTCTATTTTGGTAATTGTTCTGTGCTCTCTCTGTCATTTAATTATGTACCTTACCCTTACTCACACCACATATTTCTGCCTGAATAGGAAGTAGAAATCTTTTCTAGACAAAGCCGTGGATGTGATATCAAGTAGAGTAGCCTTTTTGGTTAACTTTCTAGACGATATTGTCGGATGTGATCTCTTAACTATTTCTATCTCCACTTCATCATCCATATGCTTTAACTTGTGCCTCATCTTACCCATTAAAACCCATCACTTCCTATCCACTCGCCTGCTTGAGCTTACGACCCAGGCATGAACAAGATGGGAAATTCATTGAGTGTGCTATGCAAATCGATGATTGTTGAATATGGCATCTATCTGTGTATTGCCTCGTTACTTCCATAGCTAACTAGTCTATTTGTACAACAGCAATGATTTGAGTCATTGTGTTAGTTATTATAGTTAATGAGCTACAGTAGCTTCGTGTGCAAACTATCTTAGGATAGTTATTATAATTCATGTTTGAGTTGCAAAATCATACACGGAAGCAGAGAGGGTATTTGAAATAGTAATGTCATAGTTAATTGTAGATCACAATCGTTAAAAACACCTATTACTGTAATTGGAGCACTAAACATGGGTGGGTTGTAATAGCCCACCCTTCAAGCTCAAGTCAGTAAGGTTGTACATCATAGTGGAATTGAACAAATTATGGCCTTGGGTTTTCAAAGTACTAGATAAGAAATGAAGGAGTTAAGGTGAGCGTAATTACTCATTTGTTTGTTGTACTAAAAAAGAAACGGAGGAAACAGGACAGTGATGGCTTTGTGAATGAGGGAGAGGGAGAGGAAGATTGCCATGGCCATGGAAACACGAAACAAATCCTTCACAAGTACCGGAGTTTGGAGGGCTTGACTAACAAGGACTTATTGAACGTGGATCTACCCATTTCCCTGCGTTCAACCAGAGGCATTGTCGATTTCTTTCTATGTTAATTCGTTCTTCTTGCCAAGGAGCTTATCTTGATTTGAGTATGCCTAATACTGGTGGCTTATTAATTATTTGCTGCTCATATCTGAATTTCTTTCTTGTGCTGGGTGTTTGTCTTGGCTTGGCTGCAGATTAACTAAGAATGTTTCTGTCCAAAATGTATTTTATTACTGGCAAGCCAATAGATTTTCACTGGACAGGGTTTTGTTGAAGTTCGAACGGAAGAGTTCAAATTTTTGATGAGGAAGCTTTAGTGTACAGGAGGAGTTAAAGGACACAAATGTTGTTAGTCTCCGTTTAATAGGCCTCCTAAATTCTCAATTTTTATTCTTCAACTTTACTCGTGGATTTATTTTTTTCAACTAAAATATATATGTATTTACTAGTTTAGTATTGTTTTTATGTCTCACGTTTGTATTTTGAAGTTTGAACATCTAAGGTGTTTTGGTTTGTCATCAGATCAGGCTTGCAAGGTCTAAGTGTGGTTGGCATTAATGTTCAATTTCTCTTAATATTACTTTCTCGGATGAGAGAGAATTAATTATGTATCTTACACTCTTATTTTATTTTGTTTCTTTCTGTGAAAAATTGTATCTCACTTTTATTATCGAAGAAAATAATTAAATTTCATATTTCAAC

Coding sequence (CDS)

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCTTGCCGACATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTCCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTTGAAGATTTCTACGAAGACATTTACGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGCGATAATCTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAAGAGGACCAGGCTGCCGCCGCACTCCAAGCGTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCGGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGCTATTCGGTAGGTACCGGGGATATAGGCCCAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGAGAACGTGAGTATCGCGGAAATGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACATGGTAGCCCCAGACGAAGCCGAAGCAGAAGCCCCGTCATTGCGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ

Homology

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BLAST of Cmc07g0180421 vs. NCBI nr
Match: XP_008453027.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >KAA0064675.1 splicing factor U2af small subunit B-like [Cucumis melo var. makuwa] >TYK19916.1 splicing factor U2af small subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 553.9 bits (1426), Expect = 7.8e-154
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Cmc07g0180421 vs. NCBI nr
Match: XP_004145565.1 (splicing factor U2af small subunit B [Cucumis sativus] >KGN55547.1 hypothetical protein Csa_012279 [Cucumis sativus])

HSP 1 Score: 542.0 bits (1395), Expect = 3.1e-150
Identity = 270/276 (97.83%), Postives = 273/276 (98.91%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLSPRNRKE+DRRERDYR+R+YRGNGRSKERHDRDGGRRR 
Sbjct: 181 RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVI REGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Cmc07g0180421 vs. NCBI nr
Match: XP_038900064.1 (splicing factor U2af small subunit B-like [Benincasa hispida])

HSP 1 Score: 531.9 bits (1369), Expect = 3.2e-147
Identity = 267/276 (96.74%), Postives = 270/276 (97.83%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLSPRNRKE+DRRERDYR+R+YRGNGRSKER DRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERQDRDGGRRRH 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPR--RSRSPVTVREGSEERRARIEQWNREREEKQ 274

[Close]

BLAST of Cmc07g0180421 vs. NCBI nr
Match: XP_022142994.1 (splicing factor U2af small subunit B-like [Momordica charantia])

HSP 1 Score: 518.5 bits (1334), Expect = 3.6e-143
Identity = 264/278 (94.96%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKE---RHDRDGGR 240
           RRKLFGRYRGYR SRSRSRSLSPRNRK+YDRRERD+R+R++RGNGRSKE   R+DRDGGR
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240

Query: 241 RRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEK 276
           RRHGSPR  RSRSPV  REGSEERRARIEQWNREREEK
Sbjct: 241 RRHGSPR--RSRSPV--REGSEERRARIEQWNREREEK 274

[Close]

BLAST of Cmc07g0180421 vs. NCBI nr
Match: XP_023521110.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG6591187.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024073.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 514.6 bits (1324), Expect = 5.2e-142
Identity = 265/279 (94.98%), Postives = 267/279 (95.70%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERH---DRDGGR 240
           RRKLFGR+RGYR SRSRSRSLSPRNRKE DRRERDYR+RE RGNGRSKERH   DRDGGR
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGR 240

Query: 241 RRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           RRHGSPR  RSRSPV  REGS ERRARIEQWNREREEKQ
Sbjct: 241 RRHGSPR--RSRSPV--REGSVERRARIEQWNREREEKQ 275

[Close]

BLAST of Cmc07g0180421 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 3.5e-125
Identity = 235/283 (83.04%), Postives = 252/283 (89.05%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRYRG--YRPSRSRSRSLSPRNRKEYDR-RER-DYREREYRGNGR----SKERHD 240
           RRKLFGRYR    R SRSRSRS+SPR ++E+ R RER D R+R+  GNG+      ERHD
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREE 275
           RD GGRRRHGSP+  RSRSP   REGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPK--RSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Cmc07g0180421 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 8.7e-124
Identity = 234/294 (79.59%), Postives = 255/294 (86.73%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRY-RGYR---PSRSRSRSLSPRNRKEYDRRERDYRE-------REYRGNGRSK- 240
           RRKLFGRY R YR    SRSRSRS+SPRN+++ DRR+  +RE       RE+  +G  K 
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 -----ERHDRDGGR-RRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
                ER +RDG R RR  SP+  R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPK--RGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of Cmc07g0180421 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 5.9e-112
Identity = 223/308 (72.40%), Postives = 245/308 (79.55%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LNVCDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNR-----KEYDRRERD-------------------- 240
           RRKL+G     R S  RSRS SPR+R     ++  RRERD                    
Sbjct: 181 RRKLYGGRS--RRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDG 240

Query: 241 YRERE-YRGNG-----RSKERHDR--DGGRRRHGSPRRSRSRSPVIAREGSEERRARIEQ 276
           YR  + YRG G         R+DR  DGGRRRHGSP R R+RSPV  RE SEERRA+IEQ
Sbjct: 241 YRGGDSYRGGGGGGRRGGGSRYDRYDDGGRRRHGSPPR-RARSPV--RESSEERRAKIEQ 300

[Close]

BLAST of Cmc07g0180421 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 2.7e-109
Identity = 215/295 (72.88%), Postives = 236/295 (80.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           G+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL+VCDN ADHMIGNVYVQFREED
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSP---RNRKEYDR----RERDYRE-------REYRGNG- 240
           R++LFG     R S S  RS SP     R++YDR    R RD+ +         YRG   
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGGSHDYYRGGSR 240

Query: 241 RSKERH----DRDGGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           RS ERH    D DG RRRH    RSR+RSPV  R+GSEERRA+IEQWNRERE  Q
Sbjct: 241 RSSERHRSSYDSDGSRRRH----RSRTRSPV--RDGSEERRAQIEQWNREREAAQ 289

[Close]

BLAST of Cmc07g0180421 vs. ExPASy Swiss-Prot
Match: A1A4K8 (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.1e-65
Identity = 131/251 (52.19%), Postives = 170/251 (67.73%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLNVCDNLADHMIGNVYVQFREE 120
             D     +   ++QEH+++F+E+++ E+  K+GE+E +NVCDNL DH++GNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 180
           + A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRR 240
           LRR+L+GR R    SRSRSR          +RR R  R+R   G G         GGR R
Sbjct: 181 LRRELYGRRRKKHRSRSRSR----------ERRSRS-RDRGRGGGGGG------GGGRER 234

Query: 241 HGSPRRSRSRS 251
                R R RS
Sbjct: 241 DRRRSRDRERS 234

[Close]

BLAST of Cmc07g0180421 vs. ExPASy TrEMBL
Match: A0A5A7VFL1 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00280 PE=4 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 3.8e-154
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Cmc07g0180421 vs. ExPASy TrEMBL
Match: A0A1S3BUN6 (splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC103493856 PE=4 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 3.8e-154
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Cmc07g0180421 vs. ExPASy TrEMBL
Match: A0A0A0L4P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664540 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 1.5e-150
Identity = 270/276 (97.83%), Postives = 273/276 (98.91%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKERHDRDGGRRRH 240
           RRKLFGRYRGYR SRSRSRSLSPRNRKE+DRRERDYR+R+YRGNGRSKERHDRDGGRRR 
Sbjct: 181 RRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQ 240

Query: 241 GSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           GSPRRSRSRSPVI REGSEERRARIEQWNREREEKQ
Sbjct: 241 GSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Cmc07g0180421 vs. ExPASy TrEMBL
Match: A0A6J1CN17 (splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC111012985 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.8e-143
Identity = 264/278 (94.96%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKE---RHDRDGGR 240
           RRKLFGRYRGYR SRSRSRSLSPRNRK+YDRRERD+R+R++RGNGRSKE   R+DRDGGR
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGR 240

Query: 241 RRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEK 276
           RRHGSPR  RSRSPV  REGSEERRARIEQWNREREEK
Sbjct: 241 RRHGSPR--RSRSPV--REGSEERRARIEQWNREREEK 274

[Close]

BLAST of Cmc07g0180421 vs. ExPASy TrEMBL
Match: A0A6J1IV82 (splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111480904 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.5e-142
Identity = 264/280 (94.29%), Postives = 271/280 (96.79%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKE---RHDRDGG 240
           RRKLFG R+RGYR SRSRSRSLSPRNRK+YDRRERDYR+R++RGNGRSKE   R+DRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
           RRRHGSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPR--RSRSPV--REGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of Cmc07g0180421 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 449.1 bits (1154), Expect = 2.5e-126
Identity = 235/283 (83.04%), Postives = 252/283 (89.05%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRYRG--YRPSRSRSRSLSPRNRKEYDR-RER-DYREREYRGNGR----SKERHD 240
           RRKLFGRYR    R SRSRSRS+SPR ++E+ R RER D R+R+  GNG+      ERHD
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREE 275
           RD GGRRRHGSP+  RSRSP   REGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPK--RSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Cmc07g0180421 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 449.1 bits (1154), Expect = 2.5e-126
Identity = 235/283 (83.04%), Postives = 252/283 (89.05%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNVCDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRYRG--YRPSRSRSRSLSPRNRKEYDR-RER-DYREREYRGNGR----SKERHD 240
           RRKLFGRYR    R SRSRSRS+SPR ++E+ R RER D R+R+  GNG+      ERHD
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREE 275
           RD GGRRRHGSP+  RSRSP   REGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPK--RSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of Cmc07g0180421 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 444.5 bits (1142), Expect = 6.2e-125
Identity = 234/294 (79.59%), Postives = 255/294 (86.73%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRY-RGYR---PSRSRSRSLSPRNRKEYDRRERDYRE-------REYRGNGRSK- 240
           RRKLFGRY R YR    SRSRSRS+SPRN+++ DRR+  +RE       RE+  +G  K 
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 -----ERHDRDGGR-RRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 277
                ER +RDG R RR  SP+  R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPK--RGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of Cmc07g0180421 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 335.9 bits (860), Expect = 3.1e-92
Identity = 184/244 (75.41%), Postives = 205/244 (84.02%), Query Frame = 0


Query: 51  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIG 110
           MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIG
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
           NVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHVKMIGKDLRRKLFGRY-RGYR---PSRSRSRSLSPRNRKEYDRRERDYRE-------R 230
           MHVK++ ++LRRKLFGRY R YR    SRSRSRS+SPRN+++ DRR+  +RE       R
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180

Query: 231 EYRGNGRSK------ERHDRDGGR-RRHGSPRRSRSRSPVIAREGSEERRARIEQWNRER 277
           E+  +G  K      ER +RDG R RR  SP+  R  SP   REGSEERRARIEQWNRER
Sbjct: 181 EFYRHGSGKRSSERSERQERDGSRGRRQASPK--RGGSPGGGREGSEERRARIEQWNRER 240

[Close]

BLAST of Cmc07g0180421 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-29
Identity = 98/293 (33.45%), Postives = 149/293 (50.85%), Query Frame = 0


Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQA 128
               + +  +E+FYED++ E  K+GE+ +  VC N + H+ GNVYV +R  + A  A Q+
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR--- 188
           + GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D     
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWAD 416

Query: 189 -------------RKLFG----RYRGYRPSRSRSRS---LSPRNRKEYDRRER------- 248
                          LFG    ++  +  S S + S   LS  + ++  RR R       
Sbjct: 417 HDRPPPRFWIHKMTSLFGYSDEKHMEHESSGSLNDSISDLSTDSHRQPSRRSRSRDHDHA 476

Query: 249 ------DYREREYRGNGRSKERHDRDGGRRRHGSPRRSRSRSPVIAREGSEER 262
                  YR R+Y G+ +   R D+    RRH         SP  +R+GS ER
Sbjct: 477 NVGSTPSYRSRKYHGDTQDSTREDK---LRRHAENCHDGDDSP--SRDGSLER 522

The following BLAST results are available for this feature:

BLAST of Cmc07g0180421 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453027.1	7.8e-154	100.00	PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >KAA0064675....	[more]
XP_004145565.1	3.1e-150	97.83	splicing factor U2af small subunit B [Cucumis sativus] >KGN55547.1 hypothetical ...	[more]
XP_038900064.1	3.2e-147	96.74	splicing factor U2af small subunit B-like [Benincasa hispida]	[more]
XP_022142994.1	3.6e-143	94.96	splicing factor U2af small subunit B-like [Momordica charantia]	[more]
XP_023521110.1	5.2e-142	94.98	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG65911...	[more]

BLAST of Cmc07g0180421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMY5	3.5e-125	83.04	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q9S709	8.7e-124	79.59	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q6AUG0	5.9e-112	72.40	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9ZQW8	2.7e-109	72.88	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A1A4K8	4.1e-65	52.19	Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1	[more]

BLAST of Cmc07g0180421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFL1	3.8e-154	100.00	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BUN6	3.8e-154	100.00	splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC10349385...	[more]
A0A0A0L4P8	1.5e-150	97.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664540 PE=4 SV=1	[more]
A0A6J1CN17	1.8e-143	94.96	splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1IV82	2.5e-142	94.29	splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of Cmc07g0180421 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42820.2	2.5e-126	83.04	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	2.5e-126	83.04	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	6.2e-125	79.59	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G27650.2	3.1e-92	75.41	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	2.9e-29	33.45	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 165..177 score: 63.29 coord: 75..90 score: 54.26 coord: 103..125 score: 65.61 coord: 18..37 score: 85.68 coord: 37..57 score: 62.34 coord: 130..154 score: 63.64
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..276
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.0087 score: 25.3 coord: 13..39 e-value: 0.0068 score: 25.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 150..174 e-value: 1.4E-4 score: 21.7 coord: 14..38 e-value: 2.8E-7 score: 30.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 11.413015
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 13.065497
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 73..142 e-value: 1.5E-4 score: 31.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 8.2E-31 score: 108.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..139 e-value: 1.2E-7 score: 31.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..146 score: 11.05946
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..276
None	No IPR available	PANTHER	PTHR12620:SF35	SPLICING FACTOR U2AF SMALL SUBUNIT A	coord: 1..276
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 1.39792E-60 score: 185.26
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 77..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0180421.1	Cmc07g0180421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0030628	pre-mRNA 3'-splice site binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding