Cmc06g0177121 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0177121
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr06: 33899707 .. 33900659 (-)
RNA-Seq Expression	Cmc06g0177121
Synteny	Cmc06g0177121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATGGGTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCACGCGGTCGGGCGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGACGAGCTGTTGAAAAAACCACAACCGGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAGGTACACATTTGTCTCGAACTACGTACTTCCAACACAACGACGTTAGTTCTTCTCAATAATTTTTAGTTATGCGGTGCAGAATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAGGGTAAGTAACAAGGGCATTGTACCTGTGAATGGAATTTTAGAAGTAACAACTGCGACATTTTAATCGTGCATTGTGATTACAGGCTATTACTACTTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGGCAACGCTATCACTTACAAGAATGGCGTGGCCCTGAAAATACACCTTCAACGTCCAAAGAGTTCTTCAATATGAAACATTCTTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGGGCGATACTGCGGGGAAAGTCATACTTATTGGTAATTTAA

mRNA sequence

ATGATTCATGGGTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCACGCGGTCGGGCGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGACGAGCTGTTGAAAAAACCACAACCGGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAGAATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAGGGCTATTACTACTTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGGCAACGCTATCACTTACAAGAATGGCGTGGCCCTGAAAATACACCTTCAACGTCCAAAGAGTTCTTCAATATGAAACATTCTTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGGGCGATACTGCGGGGAAAGTCATACTTATTGGTAATTTAA

Coding sequence (CDS)

ATGATTCATGGGTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCACGCGGTCGGGCGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGACGAGCTGTTGAAAAAACCACAACCGGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAGAATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAGGGCTATTACTACTTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGGCAACGCTATCACTTACAAGAATGGCGTGGCCCTGAAAATACACCTTCAACGTCCAAAGAGTTCTTCAATATGAAACATTCTTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGGGCGATACTGCGGGGAAAGTCATACTTATTGGTAATTTAA

Protein sequence

MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYLLVI

Homology

[Close]

BLAST of Cmc06g0177121 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 537.0 bits (1382), Expect = 9.4e-149
Identity = 257/259 (99.23%), Postives = 257/259 (99.23%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 535.4 bits (1378), Expect = 2.7e-148
Identity = 256/259 (98.84%), Postives = 257/259 (99.23%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 529.6 bits (1363), Expect = 1.5e-146
Identity = 253/259 (97.68%), Postives = 254/259 (98.07%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVC QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHIL HDVKNRV
Sbjct: 53  MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHS ARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSFARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 529.6 bits (1363), Expect = 1.5e-146
Identity = 254/259 (98.07%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGV DTKGDFVYVL GWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGP+N PSTSKEFFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 528.9 bits (1361), Expect = 2.6e-146
Identity = 253/259 (97.68%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRW+WFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG AADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGY NAEGFLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 4.5e-149
Identity = 257/259 (99.23%), Postives = 257/259 (99.23%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.3e-148
Identity = 256/259 (98.84%), Postives = 257/259 (99.23%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 529.6 bits (1363), Expect = 7.3e-147
Identity = 254/259 (98.07%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGV DTKGDFVYVL GWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGP+N PSTSKEFFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 529.6 bits (1363), Expect = 7.3e-147
Identity = 253/259 (97.68%), Postives = 254/259 (98.07%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVC QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHIL HDVKNRV
Sbjct: 53  MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHS ARNVI
Sbjct: 233 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSFARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 1.2e-146
Identity = 253/259 (97.68%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 120
           IQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRW+WFENCLGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG AADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNR 232

Query: 181 LKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVI 240
           LKVPKGYYYLVDAGY NAEGFLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVI
Sbjct: 233 LKVPKGYYYLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVI 292

Query: 241 ERAFGVLKGRWAILRGKSY 260
           ERAFGVLKGRWAILRGKSY
Sbjct: 293 ERAFGVLKGRWAILRGKSY 311

[Close]

BLAST of Cmc06g0177121 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 184.9 bits (468), Expect = 8.4e-47
Identity = 102/255 (40.00%), Postives = 145/255 (56.86%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           +++G +  C ++ RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ R 
Sbjct: 34  ILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRA 93

Query: 61  IQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECT-DQRWRWFENCLGALDGT 120
           +Q  F  SGETISRHFN VL AVI +  +     QP  N  T +    +F++C+G +D  
Sbjct: 94  VQELFCYSGETISRHFNNVLNAVIAISKDFF---QPNSNSDTLENDDPYFKDCVGVVDSF 153

Query: 121 YIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPN 180
           +I V V   ++  +R   G +  NVL        F YVLAGWEGSA+D ++L  AL+R N
Sbjct: 154 HIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRN 213

Query: 181 RLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNV 240
           +L+VP+G YY+VD  YPN  GF+APY G            N+   +KE FN +H      
Sbjct: 214 KLQVPQGKYYIVDNKYPNLPGFIAPYHGV---------STNSREEAKEMFNERHKLLHRA 273

Query: 241 IERAFGVLKGRWAIL 255
           I R FG LK R+ IL
Sbjct: 274 IHRTFGALKERFPIL 276

[Close]

BLAST of Cmc06g0177121 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-38
Identity = 95/256 (37.11%), Postives = 132/256 (51.56%), Query Frame = 0


Query: 9   CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRS 68
           C Q  RM   CF  LC++L+T   L  T  + +EE VAMFL I  H+   R +   F R+
Sbjct: 66  CLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRN 125

Query: 69  GETISRHFNMVLLAVIRLHDELLKKP-----QPVPNEC-TDQR-WRWFENCLGALDGTYI 128
            ET+ R F  VL A   L  + ++ P       +P     DQR W +F   +GA+DGT++
Sbjct: 126 QETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHV 185

Query: 129 KVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRL 188
            V V    +  Y  R    + N++ +CD K  F Y+  G  GS  D+ +L+ A    +  
Sbjct: 186 CVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEF 245

Query: 189 KVPKG-YYYLVDAGYPNAEGFLAPYRGQ-----RYHL-QEWRGPENTPSTSKEFFNMKHS 248
            +P    YYLVD+GYPN +G LAPYR       RYH+ Q + GP   P    E FN  H+
Sbjct: 246 PLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPR--PRNKHELFNQCHT 305

Query: 249 SARNVIERAFGVLKGR 251
           S R+VIER F + K +
Sbjct: 306 SLRSVIERTFRIWKNK 319

[Close]

BLAST of Cmc06g0177121 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-25
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 154 FVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQ 213
           F+YVL+GWEGSA DSR+L DAL +          +YLVD G+ N   FLAP+RG RYHLQ
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQ 84

Query: 214 EWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILR 256
           E+ G    P T  E FN++H S RNVIER FG+ K R+AI +
Sbjct: 85  EFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFK 116

[Close]

BLAST of Cmc06g0177121 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-20
Identity = 73/218 (33.49%), Postives = 101/218 (46.33%), Query Frame = 0


Query: 2   IHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVI 61
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYI 121
              F  + ETI R F+ VL A+ RL  E + +P+ V      +  R   N L        
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYI-RPRKV------EELRAISNRL-------- 136

Query: 122 KVNVPASDRARY----RTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR 181
                  D  RY        G  + NVL +CD    F Y   G  GS  D+R+L  A+S 
Sbjct: 137 ------QDDTRYWPFLMDLLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISD 196

Query: 182 PNRLKV-PKGYYYLVDAGYPNAEGFLAPYRGQRYHLQE 215
                V P   YYLVD+GY N  G+LAPYR +    Q+
Sbjct: 197 DPLFHVPPDSKYYLVDSGYANKRGYLAPYRREHREAQD 213

[Close]

BLAST of Cmc06g0177121 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-17
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 108 WFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAAD 167
           +F++C+GA+D T+I   V       +R RKG+++ N+L  C+   +F+YVL+GWEGSA D
Sbjct: 21  YFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHD 80

Query: 168 SRILRDALSR-PNRLKVP---KGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWR 217
           S++L DAL+R  NRL VP   +    +V+    N +  L     QR +  +WR
Sbjct: 81  SKVLNDALTRNSNRLPVPEEDESAEEVVEEVNDNNDEVLTTQDQQREYANQWR 133

The following BLAST results are available for this feature:

BLAST of Cmc06g0177121 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046727.1	9.4e-149	99.23	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0035620.1	2.7e-148	98.84	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0051057.1	1.5e-146	97.68	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0034843.1	1.5e-146	98.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048361.1	2.6e-146	97.68	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0177121 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc06g0177121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW1	4.5e-149	99.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	1.3e-148	98.84	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWD8	7.3e-147	98.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9H2	7.3e-147	97.68	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U476	1.2e-146	97.68	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc06g0177121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	8.4e-47	40.00	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	1.9e-38	37.11	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	1.1e-25	53.92	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	1.0e-20	33.49	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	1.4e-17	38.94	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 116..256 e-value: 1.6E-23 score: 83.1
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..256
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 2..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0177121.1	Cmc06g0177121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding