Cmc06g0176971 (gene) Melon (Charmono) v1.1

Overview
NameCmc06g0176971
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransmembrane protein
LocationCMiso1.1chr06: 33789043 .. 33789934 (+)
RNA-Seq ExpressionCmc06g0176971
SyntenyCmc06g0176971
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATAACTAAAAGAAAAGACATTTTTATTCCAAAAAAACTATGTGTCTATATTTTATATTACACGTAAACACAATAACATTTCTGTAATGAAAAGCCTATAGAAGATGATGGTGGAATAATTCTTAGAAGATTTCCAAACCCATCAGTACAACACAAACATTTCATAATGACCAAACATAGCCTTCAAACACACAATATAACATGACCCAAATTGAAAAGTATCAAGAACAAAACATAAGTGAAAATTATGAAAAGGATAGTCAAGTAAGATTGTTGTGGCAAGAGTGTGACATCTTAAGCAGGGCATTTGAAGCCATTTGGAACTTTCTTCCCACAATAGTTCAAGAGCAAGCTGAGGGAAACTGAGAGGTCAATGTTGAGCCCTAAGGCTTTTGCTTTAACCGCGGTACAAAGACAAAGAGCAGCTTCAAGATCAACTAAGTCCTTGATTAGTGTGCAACATGGGGTTTTCGGTGGTGTGCCGATCACGACGCGCACTAGACCGTCGAGCAAGTCAGCGCAAACGCCGAGCTTGAGAGTGTCCTTTGGGCACTTTGGCTGTGGTGTCGGCTGCTTCGAGGGAACGCCCTTGGGGTGCTTTTGTGGCGGTGGCGGGCAAGGGACGTAGGTGGAGGTGACCATAGTGAAGAAGAGGAGGTTGAGAAGAAGGAGAAGGGAAGTGGTCGATGAAATTTTGGAAGCCATTTGGAGAGGAATGATGATATTGAAGGGTTTTTTTTTTTTATGGTTTGTAATGACTACCAATGGGTGAATAATAATGGGAGAATGTAGAGCTTTTATAGAAGGGATTTGAGATTTTTCAATTGGGATTTTATGGTGAAGGAGTAAACTTGAGAGAGATCATATTGGATTAGGAGAAAGACAAGACTTG

mRNA sequence

GATAACTAAAAGAAAAGACATTTTTATTCCAAAAAAACTATGTGTCTATATTTTATATTACACGTAAACACAATAACATTTCTGTAATGAAAAGCCTATAGAAGATGATGGTGGAATAATTCTTAGAAGATTTCCAAACCCATCAGTACAACACAAACATTTCATAATGACCAAACATAGCCTTCAAACACACAATATAACATGACCCAAATTGAAAAGTATCAAGAACAAAACATAAGTGAAAATTATGAAAAGGATAGTCAAGTAAGATTGTTGTGGCAAGAGTGTGACATCTTAAGCAGGGCATTTGAAGCCATTTGGAACTTTCTTCCCACAATAGTTCAAGAGCAAGCTGAGGGAAACTGAGAGGTCAATGTTGAGCCCTAAGGCTTTTGCTTTAACCGCGGTACAAAGACAAAGAGCAGCTTCAAGATCAACTAAGTCCTTGATTAGTGTGCAACATGGGGTTTTCGGTGGTGTGCCGATCACGACGCGCACTAGACCGTCGAGCAAGTCAGCGCAAACGCCGAGCTTGAGAGTGTCCTTTGGGCACTTTGGCTGTGGTGTCGGCTGCTTCGAGGGAACGCCCTTGGGGTGCTTTTGTGGCGGTGGCGGGCAAGGGACGTAGGTGGAGGTGACCATAGTGAAGAAGAGGAGGTTGAGAAGAAGGAGAAGGGAAGTGGTCGATGAAATTTTGGAAGCCATTTGGAGAGGAATGATGATATTGAAGGGTTTTTTTTTTTTATGGTTTGTAATGACTACCAATGGGTGAATAATAATGGGAGAATGTAGAGCTTTTATAGAAGGGATTTGAGATTTTTCAATTGGGATTTTATGGTGAAGGAGTAAACTTGAGAGAGATCATATTGGATTAGGAGAAAGACAAGACTTG

Coding sequence (CDS)

ATGTTGAGCCCTAAGGCTTTTGCTTTAACCGCGGTACAAAGACAAAGAGCAGCTTCAAGATCAACTAAGTCCTTGATTAGTGTGCAACATGGGGTTTTCGGTGGTGTGCCGATCACGACGCGCACTAGACCGTCGAGCAAGTCAGCGCAAACGCCGAGCTTGAGAGTGTCCTTTGGGCACTTTGGCTGTGGTGTCGGCTGCTTCGAGGGAACGCCCTTGGGGTGCTTTTGTGGCGGTGGCGGGCAAGGGACGTAG

Protein sequence

MLSPKAFALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGHFGCGVGCFEGTPLGCFCGGGGQGT
Homology
BLAST of Cmc06g0176971 vs. NCBI nr
Match: DAD18548.1 (TPA_asm: hypothetical protein HUJ06_020011 [Nelumbo nucifera])

HSP 1 Score: 71.2 bits (173), Expect = 4.7e-09
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 4  PKAFALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGHFGC 63
          PK  AL AVQRQ AASRS +  + VQ G FGGVP+T  T+  ++ AQTPS  VS G  G 
Sbjct: 2  PKMLALMAVQRQTAASRSARPSMRVQQGYFGGVPMTRCTKSFNRLAQTPSFSVSLGQLGY 61

Query: 64 GVGCFEGTPLGCFCGGGGQGT 85
            G F G  +G F GGGGQGT
Sbjct: 62 -TGGFGGFGVG-FFGGGGQGT 80

BLAST of Cmc06g0176971 vs. NCBI nr
Match: KAG6427735.1 (hypothetical protein SASPL_111982 [Salvia splendens])

HSP 1 Score: 70.9 bits (172), Expect = 6.1e-09
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 2   LSPKAFALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGHF 61
           L PK  AL AV R  AASRS K  +SVQHGV GGVP T  T+  SK AQTP+ +VS GHF
Sbjct: 146 LMPKTLALRAVHRHTAASRSAKPSMSVQHGVLGGVPTTRCTKAFSKLAQTPNFKVSLGHF 205

BLAST of Cmc06g0176971 vs. NCBI nr
Match: KAG9132882.1 (hypothetical protein Leryth_014815 [Lithospermum erythrorhizon])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 38/62 (61.29%), Postives = 41/62 (66.13%), Query Frame = 0

Query: 4  PKAFALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGHFGC 63
          PK  AL AVQRQ AASRS +    VQHGVF   P TT T+P +KSA TPS   SFGH G 
Sbjct: 2  PKTLALMAVQRQTAASRSARPPRRVQHGVFDCEPTTTLTKPPNKSAHTPSFNASFGHVGE 61

Query: 64 GV 66
          GV
Sbjct: 62 GV 63

BLAST of Cmc06g0176971 vs. NCBI nr
Match: KAF7801660.1 (uncharacterized protein G2W53_040771 [Senna tora])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 0

Query: 2  LSPKAFALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGH 61
          L P+  AL AVQRQRAASRS KSL+ +QHG  GG PI T  RP++ SA TP+LRVS GH
Sbjct: 11 LMPRTLALRAVQRQRAASRSAKSLMRLQHGRVGGAPIWTLIRPNT-SAHTPNLRVSIGH 68

BLAST of Cmc06g0176971 vs. NCBI nr
Match: KAG9153997.1 (hypothetical protein Leryth_000518 [Lithospermum erythrorhizon])

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 44/82 (53.66%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 2   LSPKAFALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGHF 61
           L P+A AL  VQR  AASRS +SLI VQHGV GG+P    + P S  A TPSL VSFGHF
Sbjct: 36  LLPRAVALRTVQRHAAASRSARSLIRVQHGVTGGLPTVRLSNPLSTFAHTPSLSVSFGHF 95

Query: 62  GCGVGCFEGTPLGCFCGGGGQG 84
           G   G      +G   GG G G
Sbjct: 96  GARFGTM---GMGVVEGGIGSG 114

BLAST of Cmc06g0176971 vs. ExPASy TrEMBL
Match: A0A251RTZ3 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0549861 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-09
Identity = 49/85 (57.65%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 2  LSPKAFALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGHF 61
          L PK  AL AVQRQ AASRS   L SVQHGVFGG P T   R  SK A TP+L VSFG  
Sbjct: 4  LIPKILALIAVQRQTAASRSASPLRSVQHGVFGGFPTTRWIRSLSKLAHTPNLSVSFGQV 63

Query: 62 ---GCGVGCFEGTPLGCFCGGGGQG 84
             G GVG F G  +G   GG G G
Sbjct: 64 ALGGEGVGVFGGDGVGVL-GGEGVG 87

BLAST of Cmc06g0176971 vs. ExPASy TrEMBL
Match: A0A022QSM1 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017316mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 4  PKAFALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFG 60
          P+ FAL AVQRQ AASRS    + +QHGVFGGVPI     P SK   TPS RVSFG
Sbjct: 26 PRTFALMAVQRQTAASRSANPAMRLQHGVFGGVPIVRPINPPSKLVHTPSFRVSFG 81

BLAST of Cmc06g0176971 vs. ExPASy TrEMBL
Match: A0A2P5F5C4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_112670 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 2  LSPKAFALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGH 61
          L P+  AL AVQRQ AASRS +  I VQ GV GGVP+ T T P SKSA TP+ R S GH
Sbjct: 4  LIPRILALMAVQRQIAASRSARPWIRVQQGVTGGVPMVTLTNPPSKSAHTPNFRASLGH 62

BLAST of Cmc06g0176971 vs. ExPASy TrEMBL
Match: A0A6L2M8X7 (Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_042356 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 43/72 (59.72%), Postives = 46/72 (63.89%), Query Frame = 0

Query: 11 AVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGHFGCGVGCFEG 70
          AVQRQ AASRS +  + VQHGVF GVP T  TR  SK A TP+LRVSFG    G GC   
Sbjct: 2  AVQRQTAASRSVRPPMRVQHGVFAGVPTTRWTRSLSKLAHTPNLRVSFGQVASG-GCEGV 61

Query: 71 TPLGCFCGGGGQ 83
            LG   GGGGQ
Sbjct: 62 GGLGFGDGGGGQ 72

BLAST of Cmc06g0176971 vs. ExPASy TrEMBL
Match: A0A654EQG9 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS5246 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-08
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 8  ALTAVQRQRAASRSTKSLISVQHGVFGGVPITTRTRPSSKSAQTPSLRVSFGHF---GCG 67
          AL+AVQRQ AASRS    + VQHG  GG+P  T +RP S  AQTPSLR S GH    G G
Sbjct: 3  ALSAVQRQAAASRSASPWMRVQHGSTGGLPRVTLSRPLSTLAQTPSLRASLGHLAIAGLG 62

Query: 68 VGCFEGTPLGCFCGGG 81
          +GC  G  LG   G G
Sbjct: 63 LGCGVGLGLGLGFGLG 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DAD18548.14.7e-0955.56TPA_asm: hypothetical protein HUJ06_020011 [Nelumbo nucifera][more]
KAG6427735.16.1e-0961.67hypothetical protein SASPL_111982 [Salvia splendens][more]
KAG9132882.11.0e-0861.29hypothetical protein Leryth_014815 [Lithospermum erythrorhizon][more]
KAF7801660.11.0e-0864.41uncharacterized protein G2W53_040771 [Senna tora][more]
KAG9153997.11.4e-0853.66hypothetical protein Leryth_000518 [Lithospermum erythrorhizon][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A251RTZ32.9e-0957.65Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0549861 PE... [more]
A0A022QSM11.1e-0862.50Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017316mg PE... [more]
A0A2P5F5C41.9e-0861.02Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_112670 PE=4 SV... [more]
A0A6L2M8X73.3e-0859.72Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_042356 PE=... [more]
A0A654EQG95.6e-0855.26Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS5246 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc06g0176971.1Cmc06g0176971.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity