Cmc06g0175921 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0175921
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 32782550 .. 32784019 (-)
RNA-Seq Expression	Cmc06g0175921
Synteny	Cmc06g0175921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAATCAAGAACCGTTACCCCTTGCCCAGGATTGATGATTTGTTTGATCAGTTGCAAGGAGCCACTGTCTTTTCTAAGATCGACCTGCGATCAAGCTATCACCAATTGAGGATCAGGGATAGTGATATCCCTAAGACCGCTTTCCGTTCTAGATACAGGCACTACGAGTTCATCGTGATGTCGTTTGGTTTGACTAATGCTCCTACGATATTCATGGACATGATGGACAGGGTGTTTAAGGATTTCTTAGACATGTTCGTCATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGACCGAGCATGAGAAGCAATTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTGTATGCCAAGTTCTTAAAGTGTGAGTTTTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAGCAAAGATCGAAGCGGTTACCAGTTGGCGTCGACCGTCTACAATTAGCGAGATTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCTAGCTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAAGCTTGTGTCTGCACCAGTCCTGATCTACAGTGATGCCTCCAAGAAAGGACTTGGTTGTATGCTGATGCAGCAGGGCAAGGTAGTTGCTTATGCCTCCCATCAGTTGAAGAGTCACGAGCAGAACTACCTTACCCATGACCTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGACATTACCTGTATGGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTAAAGTACTTCTTCACCCAGAAGGAGCTGAACATGAGACAGAGAAGATGTCTTGAATTGGTGAAGGATTACGACTGCGAGATTCTGTACCACCCAGGTAAGGCAAATGTAGTAGCCGATGCGTTGAGCAGGAAGGTTGCACATTCAGTAGCGCTTATCACGAAGCAGGCCCCCTTACTCAGAGATTTTGAGAGAGCCAAAATTGCAGTCTCAGTAGGAGAGGTTATTTCATTGTTGGCTCAGTTGTCAGTGCAGCCGACCTTGAGACAGAGGATTATTGTCACTCAGCTAAAGGATCCTTACCTGGTCGAGAAGCGTCGTTTGGTAGAGACAAGGCAAGGTGAGGATTTCTCCATATCCTCTGACGATGGTCTTACGTTTGAGGGACGTTTATGTGTGCCGAAAGACAGTATAGTCAAGAAAGCTTTTGACCGAGGCTCACAGTTCTCCATTTACTATGCACCCTGGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTGTTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTATCAGTAG

mRNA sequence

ATGTGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAATCAAGAACCGTTACCCCTTGCCCAGGATTGATGATTTGTTTGATCAGTTGCAAGGAGCCACTGTCTTTTCTAAGATCGACCTGCGATCAAGCTATCACCAATTGAGGATCAGGGATAGTGATATCCCTAAGACCGCTTTCCGTTCTAGATACAGGCACTACGAGTTCATCGTGATGTCGTTTGGTTTGACTAATGCTCCTACGATATTCATGGACATGATGGACAGGGTGTTTAAGGATTTCTTAGACATGTTCGTCATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGACCGAGCATGAGAAGCAATTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTGTATGCCAAGTTCTTAAAGTGTGAGTTTTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAGCAAAGATCGAAGCGGTTACCAGTTGGCGTCGACCGTCTACAATTAGCGAGATTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCTAGCTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAAGCTTGTGTCTGCACCAGTCCTGATCTACAGTGATGCCTCCAAGAAAGGACTTGGTTGTATGCTGATGCAGCAGGGCAAGGTAGTTGCTTATGCCTCCCATCAGTTGAAGAGTCACGAGCAGAACTACCTTACCCATGACCTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGACATTACCTGTATGGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTAAAGTACTTCTTCACCCAGAAGGAGCTGAACATGAGACAGAGAAGATGTCTTGAATTGGTGAAGGATTACGACTGCGAGATTCTGTACCACCCAGGTAAGGCAAATGTAGTAGCCGATGCGTTGAGCAGGAAGGTTGCACATTCAGTAGCGCTTATCACGAAGCAGGCCCCCTTACTCAGAGATTTTGAGAGAGCCAAAATTGCAGTCTCAGTAGGAGAGGTTATTTCATTGTTGGCTCAGTTGTCAGTGCAGCCGACCTTGAGACAGAGGATTATTGTCACTCAGCTAAAGGATCCTTACCTGGTCGAGAAGCGTCGTTTGGTAGAGACAAGGCAAGGTGAGGATTTCTCCATATCCTCTGACGATGGTCTTACGTTTGAGGGACGTTTATGTGTGCCGAAAGACAGTATAGTCAAGAAAGCTTTTGACCGAGGCTCACAGTTCTCCATTTACTATGCACCCTGGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTGTTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTATCAGTAG

Coding sequence (CDS)

ATGTGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAATCAAGAACCGTTACCCCTTGCCCAGGATTGATGATTTGTTTGATCAGTTGCAAGGAGCCACTGTCTTTTCTAAGATCGACCTGCGATCAAGCTATCACCAATTGAGGATCAGGGATAGTGATATCCCTAAGACCGCTTTCCGTTCTAGATACAGGCACTACGAGTTCATCGTGATGTCGTTTGGTTTGACTAATGCTCCTACGATATTCATGGACATGATGGACAGGGTGTTTAAGGATTTCTTAGACATGTTCGTCATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGACCGAGCATGAGAAGCAATTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTGTATGCCAAGTTCTTAAAGTGTGAGTTTTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAGCAAAGATCGAAGCGGTTACCAGTTGGCGTCGACCGTCTACAATTAGCGAGATTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCTAGCTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAAGCTTGTGTCTGCACCAGTCCTGATCTACAGTGATGCCTCCAAGAAAGGACTTGGTTGTATGCTGATGCAGCAGGGCAAGGTAGTTGCTTATGCCTCCCATCAGTTGAAGAGTCACGAGCAGAACTACCTTACCCATGACCTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGACATTACCTGTATGGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTAAAGTACTTCTTCACCCAGAAGGAGCTGAACATGAGACAGAGAAGATGTCTTGAATTGGTGAAGGATTACGACTGCGAGATTCTGTACCACCCAGGTAAGGCAAATGTAGTAGCCGATGCGTTGAGCAGGAAGGTTGCACATTCAGTAGCGCTTATCACGAAGCAGGCCCCCTTACTCAGAGATTTTGAGAGAGCCAAAATTGCAGTCTCAGTAGGAGAGGTTATTTCATTGTTGGCTCAGTTGTCAGTGCAGCCGACCTTGAGACAGAGGATTATTGTCACTCAGCTAAAGGATCCTTACCTGGTCGAGAAGCGTCGTTTGGTAGAGACAAGGCAAGGTGAGGATTTCTCCATATCCTCTGACGATGGTCTTACGTTTGAGGGACGTTTATGTGTGCCGAAAGACAGTATAGTCAAGAAAGCTTTTGACCGAGGCTCACAGTTCTCCATTTACTATGCACCCTGGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTGTTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTATCAGTAG

Protein sequence

MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQLHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVLIYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALSRKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLVEKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVKKAFDRGSQFSIYYAPWKYEDVPRLEVCLLVEEHEERSGRFYQ

Homology

[Close]

BLAST of Cmc06g0175921 vs. NCBI nr
Match: KAA0059723.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 795.8 bits (2054), Expect = 2.1e-226
Identity = 401/457 (87.75%), Postives = 421/457 (92.12%), Query Frame = 0


Query: 1    MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
            M LCIDYRELNKVT+KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 615  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 674

Query: 61   FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
            FR RY HYEF+VMSFGLTN P +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 675  FRLRYGHYEFVVMSFGLTNTPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 734

Query: 121  LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
            LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 735  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 794

Query: 181  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
            IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACESSFQELKQKLV+APVL  
Sbjct: 795  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTV 854

Query: 241  --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                    IYSDASKKGLGC+LMQQGKVVAYAS QLK HEQNYLTHDLELAAVVFALK+W
Sbjct: 855  PDGSENFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYLTHDLELAAVVFALKMW 914

Query: 301  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
            RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 915  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 974

Query: 361  RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
            RKV+HS ALITKQ PLLRDFERA+IAVSVGEV + LAQLSVQPTLRQ+II  QL DPYLV
Sbjct: 975  RKVSHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLSVQPTLRQKIITAQLNDPYLV 1034

Query: 421  EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
            EKRR+VET QGEDFSISSDDGL FEGRLCVP+DS +K
Sbjct: 1035 EKRRMVETGQGEDFSISSDDGLMFEGRLCVPEDSAIK 1071

[Close]

BLAST of Cmc06g0175921 vs. NCBI nr
Match: KAA0063793.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 794.3 bits (2050), Expect = 6.1e-226
Identity = 401/457 (87.75%), Postives = 420/457 (91.90%), Query Frame = 0


Query: 1   MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
           M LCIDYRELNKVT+KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 179 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 238

Query: 61  FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
           FRSRY HYEF+VMSFGLTNAP +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 239 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 298

Query: 121 LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 299 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 358

Query: 181 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
           IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACE SFQELKQKLV+APVL  
Sbjct: 359 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTV 418

Query: 241 --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                   IYSDASKKGLGC+LMQQGKVVAYAS QLK HEQNY THDLELAAVVFALKIW
Sbjct: 419 PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIW 478

Query: 301 RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
           RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 479 RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 538

Query: 361 RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
           RKVAHS ALITKQ PLLRDFERA+IAVSVGEV + LAQL+VQPTLRQ+II  QL DPYL 
Sbjct: 539 RKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLNDPYLA 598

Query: 421 EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
           EKRR+VET QGEDFSISSDDGL FEGRLCVP+D+ VK
Sbjct: 599 EKRRVVETEQGEDFSISSDDGLMFEGRLCVPEDNAVK 635

[Close]

BLAST of Cmc06g0175921 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 793.5 bits (2048), Expect = 1.0e-225
Identity = 402/457 (87.96%), Postives = 419/457 (91.68%), Query Frame = 0


Query: 1    MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
            M LCIDYRELNKVT+KNRYPLP+IDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 613  MRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 672

Query: 61   FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
            FRSRY HYEF+VMSFGLTNAP +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 673  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 732

Query: 121  LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
            LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 733  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 792

Query: 181  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
            IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACESSFQELKQKLV APVL  
Sbjct: 793  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVIAPVLTV 852

Query: 241  --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                    IYSDASKKGLGC+LMQQGKVVAYAS QLK HEQNY THDLELAAVVFALKIW
Sbjct: 853  PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIW 912

Query: 301  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
            RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 913  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 972

Query: 361  RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
            RKVAHS ALITKQ PLLRDFERA+IAVSVGEV + LAQLSVQPTLRQ+II  QL DPYL 
Sbjct: 973  RKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLA 1032

Query: 421  EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
            EKRR+VET QGEDFSIS DDGL FEGRLCVP+DS VK
Sbjct: 1033 EKRRMVETGQGEDFSISFDDGLMFEGRLCVPEDSAVK 1069

[Close]

BLAST of Cmc06g0175921 vs. NCBI nr
Match: KAA0063098.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 793.1 bits (2047), Expect = 1.4e-225
Identity = 402/457 (87.96%), Postives = 419/457 (91.68%), Query Frame = 0


Query: 1    MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
            M LCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 641  MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 700

Query: 61   FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
            FRSRY HYEF+VMSFGLTNAP +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 701  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121  LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
            LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 761  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 820

Query: 181  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
            IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACE SFQELKQKLV+APVL  
Sbjct: 821  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTV 880

Query: 241  --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                    IYSDASKK LGC+LMQQGKVVAYAS QLK+HEQNY THDLELAAVVFALKIW
Sbjct: 881  PDGSGNFVIYSDASKKELGCVLMQQGKVVAYASRQLKTHEQNYPTHDLELAAVVFALKIW 940

Query: 301  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
            RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 941  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 1000

Query: 361  RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
            RKVAHS ALITKQ PLLRDFERA+I VSVGEV + LAQLSVQPTLRQ+II  QL DPYL 
Sbjct: 1001 RKVAHSAALITKQTPLLRDFERAEITVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLA 1060

Query: 421  EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
            EKRR+VET QGEDFSISSDDGL FEGRLCVP+DS VK
Sbjct: 1061 EKRRMVETGQGEDFSISSDDGLMFEGRLCVPEDSAVK 1097

[Close]

BLAST of Cmc06g0175921 vs. NCBI nr
Match: TYK20443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 792.7 bits (2046), Expect = 1.8e-225
Identity = 401/457 (87.75%), Postives = 419/457 (91.68%), Query Frame = 0


Query: 1    MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
            M LCIDYRELNKVT+KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 977  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 1036

Query: 61   FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
            FRSRY HYEF+VMSFGLTNAP +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 1037 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 1096

Query: 121  LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
            LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 1097 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSE 1156

Query: 181  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
            IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACE SFQELKQKLV+APVL  
Sbjct: 1157 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTV 1216

Query: 241  --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                    IYSDASKKGLGC+LMQQGKVVAYAS QLK HEQNY THDLELAAVVFALKIW
Sbjct: 1217 PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIW 1276

Query: 301  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
            RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 1277 RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 1336

Query: 361  RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
            RKVAHS ALITKQ PLLRDFERA+IAVSVGEV + LAQL+VQPTLRQ+II  QL DPYL 
Sbjct: 1337 RKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLDDPYLA 1396

Query: 421  EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
            EKRR+VET QGE FSISSDDGL FEGRLCVP+DS VK
Sbjct: 1397 EKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVK 1433

[Close]

BLAST of Cmc06g0175921 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.2e-68
Identity = 134/360 (37.22%), Postives = 215/360 (59.72%), Query Frame = 0


Query: 3   LCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFR 62
           + IDYR+LN++T+ +R+P+P +D++  +L     F+ IDL   +HQ+ +    + KTAF 
Sbjct: 264 IVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFS 323

Query: 63  SRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQLH 122
           +++ HYE++ M FGL NAP  F   M+ + +  L+   +V++DDI+++S +  EH + L 
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLG 383

Query: 123 QVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISEIR 182
            V E L    L  +  KCEF  ++ TFLGHV++ +G+  +P KIEA+  +  P+   EI+
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 183 SFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPF-VWSLACESSFQELKQKLVSAPVL--- 242
           +FLGL GYYR+F+ +F+ IA P+T+  +K       +   +S+F++LK  +   P+L   
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVP 503

Query: 243 -------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIWR 302
                  + +DAS   LG +L Q G  ++Y S  L  HE NY T + EL A+V+A K +R
Sbjct: 504 DFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFR 563

Query: 303 HYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALSR 352
           HYL G   +I +DH+ L + +  K+ N +  R    + ++D +I Y  GK N VADALSR
Sbjct: 564 HYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc06g0175921 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-67
Identity = 135/358 (37.71%), Postives = 209/358 (58.38%), Query Frame = 0


Query: 5   IDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFRSR 64
           IDYR+LN++TI +RYP+P +D++  +L     F+ IDL   +HQ+ + +  I KTAF ++
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 65  YRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQLHQV 124
             HYE++ M FGL NAP  F   M+ + +  L+   +V++DDI+I+S + TEH   +  V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 125 LETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISEIRSF 184
              L    L  +  KCEF  K+  FLGH+V+ +G+  +P K++A+ S+  P+   EIR+F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 185 LGLAGYYRRFVEDFSRIASPLTQLTRKGTPF-VWSLACESSFQELKQKLVSAPVL----- 244
           LGL GYYR+F+ +++ IA P+T   +K T      L    +F++LK  ++  P+L     
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDF 504

Query: 245 -----IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIWRHY 304
                + +DAS   LG +L Q G  +++ S  L  HE NY   + EL A+V+A K +RHY
Sbjct: 505 EKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHY 564

Query: 305 LYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALSR 352
           L G +  I +DH+ L++    KE   +  R    + +Y  +I Y  GK N VADALSR
Sbjct: 565 LLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Cmc06g0175921 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-67
Identity = 134/375 (35.73%), Postives = 217/375 (57.87%), Query Frame = 0


Query: 3   LCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFR 62
           + +D++ LN VTI + YP+P I+     L  A  F+ +DL S +HQ+ +++SDIPKTAF 
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239

Query: 63  SRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQLH 122
           +    YEF+ + FGL NAP IF  M+D + ++ +     V+IDDI+++S+    H K L 
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 123 QVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISEIR 182
            VL +L    L     K  F   +V FLG++V+++G+  DP K+ A++    P+++ E++
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 183 SFLGLAGYYRRFVEDFSRIASPLTQLTR-----------KGTPFVWSLACESSFQELKQK 242
            FLG+  YYR+F++D++++A PLT LTR              P         SF +LK  
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSI 419

Query: 243 LVSAPVLIY----------SDASKKGLGCMLMQ----QGKVVAYASHQLKSHEQNYLTHD 302
           L S+ +L +          +DAS   +G +L Q    + + +AY S  L   E+NY T +
Sbjct: 420 LCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIE 479

Query: 303 LELAAVVFALKIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEIL 352
            E+ A++++L   R YLYG   I+++TDH+ L +    +  N + +R    +++Y+CE++
Sbjct: 480 KEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELI 539

[Close]

BLAST of Cmc06g0175921 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-63
Identity = 149/475 (31.37%), Postives = 248/475 (52.21%), Query Frame = 0


Query: 3   LCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFR 62
           + +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S+YH +R+R  D  K AFR
Sbjct: 464 MVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFR 523

Query: 63  SRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQLH 122
                +E++VM +G++ AP  F   ++ +  +  +  V+ ++DDILI+SK+E+EH K + 
Sbjct: 524 CPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVK 583

Query: 123 QVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISEIR 182
            VL+ L+   L     KCEF   +V F+G+ +S +G +     I+ V  W++P    E+R
Sbjct: 584 DVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELR 643

Query: 183 SFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVLIYSD 242
            FLG   Y R+F+   S++  PL  L +K   + W+     + + +KQ LVS PVL + D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703

Query: 243 ASKK----------GLGCMLMQQGK-----VVAYASHQLKSHEQNYLTHDLELAAVVFAL 302
            SKK           +G +L Q+        V Y S ++   + NY   D E+ A++ +L
Sbjct: 704 FSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSL 763

Query: 303 KIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRCLELVKDYDCEILYHPGKAN 362
           K WRHYL    E  +I TDH++L    T +    N R  R    ++D++ EI Y PG AN
Sbjct: 764 KHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSAN 823

Query: 363 VVADALSRKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQ 422
            +ADALSR       ++ +  P+ +D E           I+ + Q+S+    + +++   
Sbjct: 824 HIADALSR-------IVDETEPIPKDSE--------DNSINFVNQISITDDFKNQVVTEY 883

Query: 423 LKDPYLVEKRRLVETRQGEDFSISSDDGLTFEGRLCVPKD-----SIVKKAFDRG 454
             D  L+      + R  E+  +     +  + ++ +P D     +I+KK  + G
Sbjct: 884 TNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEG 923

[Close]

BLAST of Cmc06g0175921 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-63
Identity = 149/475 (31.37%), Postives = 248/475 (52.21%), Query Frame = 0


Query: 3   LCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTAFR 62
           + +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S+YH +R+R  D  K AFR
Sbjct: 464 MVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFR 523

Query: 63  SRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQLH 122
                +E++VM +G++ AP  F   ++ +  +  +  V+ ++DDILI+SK+E+EH K + 
Sbjct: 524 CPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVK 583

Query: 123 QVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISEIR 182
            VL+ L+   L     KCEF   +V F+G+ +S +G +     I+ V  W++P    E+R
Sbjct: 584 DVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELR 643

Query: 183 SFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVLIYSD 242
            FLG   Y R+F+   S++  PL  L +K   + W+     + + +KQ LVS PVL + D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703

Query: 243 ASKK----------GLGCMLMQQGK-----VVAYASHQLKSHEQNYLTHDLELAAVVFAL 302
            SKK           +G +L Q+        V Y S ++   + NY   D E+ A++ +L
Sbjct: 704 FSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSL 763

Query: 303 KIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRCLELVKDYDCEILYHPGKAN 362
           K WRHYL    E  +I TDH++L    T +    N R  R    ++D++ EI Y PG AN
Sbjct: 764 KHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSAN 823

Query: 363 VVADALSRKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQ 422
            +ADALSR       ++ +  P+ +D E           I+ + Q+S+    + +++   
Sbjct: 824 HIADALSR-------IVDETEPIPKDSE--------DNSINFVNQISITDDFKNQVVTEY 883

Query: 423 LKDPYLVEKRRLVETRQGEDFSISSDDGLTFEGRLCVPKD-----SIVKKAFDRG 454
             D  L+      + R  E+  +     +  + ++ +P D     +I+KK  + G
Sbjct: 884 TNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEG 923

[Close]

BLAST of Cmc06g0175921 vs. ExPASy TrEMBL
Match: A0A5A7UUX8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1395G00080 PE=4 SV=1)

HSP 1 Score: 795.8 bits (2054), Expect = 1.0e-226
Identity = 401/457 (87.75%), Postives = 421/457 (92.12%), Query Frame = 0


Query: 1    MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
            M LCIDYRELNKVT+KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 615  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 674

Query: 61   FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
            FR RY HYEF+VMSFGLTN P +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 675  FRLRYGHYEFVVMSFGLTNTPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 734

Query: 121  LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
            LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 735  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 794

Query: 181  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
            IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACESSFQELKQKLV+APVL  
Sbjct: 795  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTV 854

Query: 241  --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                    IYSDASKKGLGC+LMQQGKVVAYAS QLK HEQNYLTHDLELAAVVFALK+W
Sbjct: 855  PDGSENFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYLTHDLELAAVVFALKMW 914

Query: 301  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
            RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 915  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 974

Query: 361  RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
            RKV+HS ALITKQ PLLRDFERA+IAVSVGEV + LAQLSVQPTLRQ+II  QL DPYLV
Sbjct: 975  RKVSHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLSVQPTLRQKIITAQLNDPYLV 1034

Query: 421  EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
            EKRR+VET QGEDFSISSDDGL FEGRLCVP+DS +K
Sbjct: 1035 EKRRMVETGQGEDFSISSDDGLMFEGRLCVPEDSAIK 1071

[Close]

BLAST of Cmc06g0175921 vs. ExPASy TrEMBL
Match: A0A5A7V6R2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00070 PE=4 SV=1)

HSP 1 Score: 794.3 bits (2050), Expect = 2.9e-226
Identity = 401/457 (87.75%), Postives = 420/457 (91.90%), Query Frame = 0


Query: 1   MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
           M LCIDYRELNKVT+KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 179 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 238

Query: 61  FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
           FRSRY HYEF+VMSFGLTNAP +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 239 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 298

Query: 121 LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
           LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 299 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 358

Query: 181 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
           IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACE SFQELKQKLV+APVL  
Sbjct: 359 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTV 418

Query: 241 --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                   IYSDASKKGLGC+LMQQGKVVAYAS QLK HEQNY THDLELAAVVFALKIW
Sbjct: 419 PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIW 478

Query: 301 RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
           RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 479 RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 538

Query: 361 RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
           RKVAHS ALITKQ PLLRDFERA+IAVSVGEV + LAQL+VQPTLRQ+II  QL DPYL 
Sbjct: 539 RKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLNDPYLA 598

Query: 421 EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
           EKRR+VET QGEDFSISSDDGL FEGRLCVP+D+ VK
Sbjct: 599 EKRRVVETEQGEDFSISSDDGLMFEGRLCVPEDNAVK 635

[Close]

BLAST of Cmc06g0175921 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 793.5 bits (2048), Expect = 5.0e-226
Identity = 402/457 (87.96%), Postives = 419/457 (91.68%), Query Frame = 0


Query: 1    MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
            M LCIDYRELNKVT+KNRYPLP+IDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 613  MRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 672

Query: 61   FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
            FRSRY HYEF+VMSFGLTNAP +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 673  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 732

Query: 121  LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
            LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 733  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 792

Query: 181  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
            IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACESSFQELKQKLV APVL  
Sbjct: 793  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVIAPVLTV 852

Query: 241  --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                    IYSDASKKGLGC+LMQQGKVVAYAS QLK HEQNY THDLELAAVVFALKIW
Sbjct: 853  PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIW 912

Query: 301  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
            RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 913  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 972

Query: 361  RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
            RKVAHS ALITKQ PLLRDFERA+IAVSVGEV + LAQLSVQPTLRQ+II  QL DPYL 
Sbjct: 973  RKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLA 1032

Query: 421  EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
            EKRR+VET QGEDFSIS DDGL FEGRLCVP+DS VK
Sbjct: 1033 EKRRMVETGQGEDFSISFDDGLMFEGRLCVPEDSAVK 1069

[Close]

BLAST of Cmc06g0175921 vs. ExPASy TrEMBL
Match: A0A5A7V646 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1337G00030 PE=4 SV=1)

HSP 1 Score: 793.1 bits (2047), Expect = 6.5e-226
Identity = 402/457 (87.96%), Postives = 419/457 (91.68%), Query Frame = 0


Query: 1    MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
            M LCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 641  MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 700

Query: 61   FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
            FRSRY HYEF+VMSFGLTNAP +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 701  FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 760

Query: 121  LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
            LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 761  LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 820

Query: 181  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
            IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACE SFQELKQKLV+APVL  
Sbjct: 821  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTV 880

Query: 241  --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                    IYSDASKK LGC+LMQQGKVVAYAS QLK+HEQNY THDLELAAVVFALKIW
Sbjct: 881  PDGSGNFVIYSDASKKELGCVLMQQGKVVAYASRQLKTHEQNYPTHDLELAAVVFALKIW 940

Query: 301  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
            RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 941  RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 1000

Query: 361  RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
            RKVAHS ALITKQ PLLRDFERA+I VSVGEV + LAQLSVQPTLRQ+II  QL DPYL 
Sbjct: 1001 RKVAHSAALITKQTPLLRDFERAEITVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLA 1060

Query: 421  EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
            EKRR+VET QGEDFSISSDDGL FEGRLCVP+DS VK
Sbjct: 1061 EKRRMVETGQGEDFSISSDDGLMFEGRLCVPEDSAVK 1097

[Close]

BLAST of Cmc06g0175921 vs. ExPASy TrEMBL
Match: A0A5D3BTN0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001560 PE=4 SV=1)

HSP 1 Score: 792.7 bits (2046), Expect = 8.5e-226
Identity = 401/457 (87.75%), Postives = 419/457 (91.68%), Query Frame = 0


Query: 1    MCLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRDSDIPKTA 60
            M LCIDYRELNKVT+KNRYPLPRIDDLFDQLQGATVFSKIDLRS YHQLRIRD DIPKTA
Sbjct: 978  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 1037

Query: 61   FRSRYRHYEFIVMSFGLTNAPTIFMDMMDRVFKDFLDMFVIVFIDDILIYSKTETEHEKQ 120
            FRSRY HYEF+VMSFGLTNAP +FMD+M+RVFKDFLD FVIVFIDDILIYSKTE EHE+ 
Sbjct: 1038 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 1097

Query: 121  LHQVLETLRANKLYAKFLKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWRRPSTISE 180
            LHQVLETLRANKLYAKF KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+W RPST+SE
Sbjct: 1098 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSE 1157

Query: 181  IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL-- 240
            IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWS ACE SFQELKQKLV+APVL  
Sbjct: 1158 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTV 1217

Query: 241  --------IYSDASKKGLGCMLMQQGKVVAYASHQLKSHEQNYLTHDLELAAVVFALKIW 300
                    IYSDASKKGLGC+LMQQGKVVAYAS QLK HEQNY THDLELAAVVFALKIW
Sbjct: 1218 PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIW 1277

Query: 301  RHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRCLELVKDYDCEILYHPGKANVVADALS 360
            RHYLYGEKIQI+TDHKSLKYFFTQKELNMRQRR LELVKDYDCEILYHPGKANVVADALS
Sbjct: 1278 RHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALS 1337

Query: 361  RKVAHSVALITKQAPLLRDFERAKIAVSVGEVISLLAQLSVQPTLRQRIIVTQLKDPYLV 420
            RKVAHS ALITKQ PLLRDFERA+IAVSVGEV + LAQL+VQPTLRQ+II  QL DPYL 
Sbjct: 1338 RKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLDDPYLA 1397

Query: 421  EKRRLVETRQGEDFSISSDDGLTFEGRLCVPKDSIVK 448
            EKRR+VET QGE FSISSDDGL FEGRLCVP+DS VK
Sbjct: 1398 EKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVK 1434

[Close]

BLAST of Cmc06g0175921 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 4.6e-22
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 0


Query: 121 LHQVLETLRANKLYAKFLKCEFWLKKVTFLG--HVVSSEGVSVDPAKIEAVTSWRRPSTI 180
           L  VL+    ++ YA   KC F   ++ +LG  H++S EGVS DPAK+EA+  W  P   
Sbjct: 4   LGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNT 63

Query: 181 SEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSLACESSFQELKQKLVSAPVL 240
           +E+R FLGL GYYRRFV+++ +I  PLT+L +K +   W+     +F+ LK  + + PVL
Sbjct: 64  TELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPVL 123

Query: 241 IYSD 243
              D
Sbjct: 124 ALPD 126

The following BLAST results are available for this feature:

BLAST of Cmc06g0175921 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059723.1	2.1e-226	87.75	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063793.1	6.1e-226	87.75	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	1.0e-225	87.96	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063098.1	1.4e-225	87.96	pol protein [Cucumis melo var. makuwa]	[more]
TYK20443.1	1.8e-225	87.75	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0175921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	3.2e-68	37.22	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.6e-67	37.71	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	2.7e-67	35.73	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P0CT41	1.4e-63	31.37	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.4e-63	31.37	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0175921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUX8	1.0e-226	87.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7V6R2	2.9e-226	87.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A5A7V4E4	5.0e-226	87.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7V646	6.5e-226	87.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5D3BTN0	8.5e-226	87.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Cmc06g0175921 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.6e-22	41.13	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..79 e-value: 1.5E-63 score: 215.9
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 162..411
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 162..411
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..154 e-value: 3.94235E-75 score: 232.101
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 239..353 e-value: 3.32274E-53 score: 173.448
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 1.5E-63 score: 215.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..247 e-value: 8.9E-30 score: 104.6
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..153 e-value: 5.5E-23 score: 81.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..154 score: 9.306096
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 234..331 e-value: 1.4E-30 score: 105.7
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..337

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0175921.1	Cmc06g0175921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding