Cmc06g0175641 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0175641
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	4-hydroxy-4-methyl-2-oxoglutarate aldolase
Location	CMiso1.1chr06: 32462802 .. 32465089 (+)
RNA-Seq Expression	Cmc06g0175641
Synteny	Cmc06g0175641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAACACTGGTTTCTTGAAGCCCAACGATGACGATCATCGCTGTCAAGGCACATGAACCAACGCTATGGCCTATTTGAGCATCTTTTGTTGATAAGCTTTCCGCCATTTCTAAAATCTTACGCCATGGGGTCGCTTAAATTGACTCACCCTCCTTGTTTGCTTCTTCAATTGGCTGGTTTTGTGCCTTAACTTTCTACAGAAGAGGAAACCCCTTCTCCCTTTCAATTGGGTGAGTTTGCTTTGTCATTTTTATCTTCGTTTATTTCTTCTACATGGAATACTGTTTACATGAGTTTCAATTAGTTCTTAGATGTGTTGAGAACTTGATAATCCAGTTTTGTTTGTCCTGCTCTGAAAAACCATCCTTGGAAATTTTGTTTCATCTGTACTTCGAGAACTTAACATGTTTCTTCCTCAATTGGCTGGGGGTGGTGTTTTTTATGTCTTTATGCAAAGTTGTTTTTCGTGGGAGAAGTATTTTAAACCATCTTCCATTAAATTTGAGAAGAAATTGTTACTATGAACAGAGAGGGTAGATGAAGAAGCTTGTTTGACCTTGACAATTAGAGTTAAAGCAATGGTTTACTTGTACCATCCATATACATTGATGCAATGATGCTGAGGCATTTTTGTGTTTGTCCATCAAGTGATTAATCACAACTAAGTGCATGTTTGAGAATGGCAGTTGAAGTAGTAATTTAAACGAAAGAGGTTTAGGTGACATTGATTTTGTAAATTTGATTTCTATAACTTCATACTTTAAAAAGTGACTTTGAAGTATTATGTTTGGTTGATTTATAGTTATCAAATTACTAAAAGGAGGAAAAAAGATTCTTAATTATTGGGGCAAAGTTAGTATTTCGGAGAAAAGTGATTTTGAGCATCGAAAACGTGATTTAAAATCACCTCCAAACATACCATTATAAATGCCTGGACTTTTGATATGAAACCAACTGAGTTTCATTTATCTCTTGTTGATATTGATACCAATACCATATCACAACACTAGTAAACAACTCCAACTTTTGAGTCAATTAGACCAACTTTAGTTTATTAAATAGATCAGATCTTAGTTTGAGTCATCAACTTCCGCAGTTATTTTCCGTTGGATAGATATTATATATATTAGTACTTCAACTTTGAAATGTTTTCCATTGATTCATGATTGACTTTCTAAGTACTTATAGACATTGTTTTTGCGCTTCAAGACACTTGTTTAAACACTTTTAGAAAATCAATCAAAATACAACACGTATCATTAAATTTTTATTAACTAGTCACCAAAATTTAGATTTATTTGTAAACTCGCCTAGTTTCAATCAATTTATATAGTAATAAAACTAAAACAACCCATTTGAAAGTTCAAAACCATAATAGAACGAAGTCTTTTATGATTTAAAACATTTGGAATTTCATTCTTTTAACAACAATGACAAATCTCATCTCCAATCTTCTCTTGTTTTGCTTCCAATAGTTTGAACTCTCCTCAAGAGAAGGAAATGTAACATTTACATTTTTCTGATCTTTCTGTGAAAGTTACTTCAAAGCTAAATCTTAACTGTTGACGTATCCTTGCCAGCAGTGGAAGGCATGGCAGCTCCAGCAACAGCAGATGTTTGTGATGCAAATGCAGCACACGTCACAAACGGAGATCTCCGAGTGCTGCAACCGAAATTCGAAATTTACGGGCAACGGCGAGCATTTTCAGGACAGATAGTGACGGTTAAGGTATTTGAAGACAATGTTTTAGTAAGACAGCTTCTTGAAACCAAAGGTGAGGGGAGGGTTCTGGTGATAGATGGAAATGGAAGCAGAAGATGTGCATTATTGGGAGGCAATCTTGGGCAATTGGCTCAAAACAATGGGTGGGCTGGGATTGTTGTAAATGGTTGCATAAGAGATGTTGATGAGATCAATAATTGTGATATTGGTGTAAGAGCATTAGGGACTAATCCATTGAAGTCAAACAAGAAAGGGATGGGAGACAAACATGTGGTTCTTCAAATTGGTGGCACTTTAATTCACGAAGGAGAGTGGTTGTATGCTGATGGTGATGGGATTTTGGTGTCCAAATTTGAGTTGTCTGTTTGAATAGATAGCCTGATTTGAGGAGGATCACAGGAAGAAGAAAAAAACACTTTCTATTGCTTGTTTCTTAGGCTTGGTTATTGAGTTCCTTCCAAGTGTATTGGATTAGGTTATGCTATCTCTTTCATTATACACAATGTATTTGTGATTCTAAATGAAAGGGTGATTTGAAAGTCAGTGTTGGATTCTTTGTTTTAG

mRNA sequence

GAAAACACTGGTTTCTTGAAGCCCAACGATGACGATCATCGCTGTCAAGGCACATGAACCAACGCTATGGCCTATTTGAGCATCTTTTGTTGATAAGCTTTCCGCCATTTCTAAAATCTTACGCCATGGGGTCGCTTAAATTGACTCACCCTCCTTGTTTGCTTCTTCAATTGGCTGGTTTTGTGCCTTAACTTTCTACAGAAGAGGAAACCCCTTCTCCCTTTCAATTGGTGGAAGGCATGGCAGCTCCAGCAACAGCAGATGTTTGTGATGCAAATGCAGCACACGTCACAAACGGAGATCTCCGAGTGCTGCAACCGAAATTCGAAATTTACGGGCAACGGCGAGCATTTTCAGGACAGATAGTGACGGTTAAGGTATTTGAAGACAATGTTTTAGTAAGACAGCTTCTTGAAACCAAAGGTGAGGGGAGGGTTCTGGTGATAGATGGAAATGGAAGCAGAAGATGTGCATTATTGGGAGGCAATCTTGGGCAATTGGCTCAAAACAATGGGTGGGCTGGGATTGTTGTAAATGGTTGCATAAGAGATGTTGATGAGATCAATAATTGTGATATTGGTGTAAGAGCATTAGGGACTAATCCATTGAAGTCAAACAAGAAAGGGATGGGAGACAAACATGTGGTTCTTCAAATTGGTGGCACTTTAATTCACGAAGGAGAGTGGTTGTATGCTGATGGTGATGGGATTTTGGTGTCCAAATTTGAGTTGTCTGTTTGAATAGATAGCCTGATTTGAGGAGGATCACAGGAAGAAGAAAAAAACACTTTCTATTGCTTGTTTCTTAGGCTTGGTTATTGAGTTCCTTCCAAGTGTATTGGATTAGGTTATGCTATCTCTTTCATTATACACAATGTATTTGTGATTCTAAATGAAAGGGTGATTTGAAAGTCAGTGTTGGATTCTTTGTTTTAG

Coding sequence (CDS)

ATGGCAGCTCCAGCAACAGCAGATGTTTGTGATGCAAATGCAGCACACGTCACAAACGGAGATCTCCGAGTGCTGCAACCGAAATTCGAAATTTACGGGCAACGGCGAGCATTTTCAGGACAGATAGTGACGGTTAAGGTATTTGAAGACAATGTTTTAGTAAGACAGCTTCTTGAAACCAAAGGTGAGGGGAGGGTTCTGGTGATAGATGGAAATGGAAGCAGAAGATGTGCATTATTGGGAGGCAATCTTGGGCAATTGGCTCAAAACAATGGGTGGGCTGGGATTGTTGTAAATGGTTGCATAAGAGATGTTGATGAGATCAATAATTGTGATATTGGTGTAAGAGCATTAGGGACTAATCCATTGAAGTCAAACAAGAAAGGGATGGGAGACAAACATGTGGTTCTTCAAATTGGTGGCACTTTAATTCACGAAGGAGAGTGGTTGTATGCTGATGGTGATGGGATTTTGGTGTCCAAATTTGAGTTGTCTGTTTGA

Protein sequence

MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLETKGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGTNPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV

Homology

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BLAST of Cmc06g0175641 vs. NCBI nr
Match: XP_008448991.1 (PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] >XP_008448992.1 PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] >TYK19391.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 339.0 bits (868), Expect = 2.4e-89
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET
Sbjct: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT
Sbjct: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 166

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BLAST of Cmc06g0175641 vs. NCBI nr
Match: XP_004148273.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_004148274.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_011650460.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_031739443.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >KGN55987.1 hypothetical protein Csa_009602 [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-87
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET
Sbjct: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCD+GVRALG 
Sbjct: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDVGVRALGA 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKGMG+KHVVLQIGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGEKHVVLQIGGTLIHEGEWLYADSDGILVSKFELSV 166

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BLAST of Cmc06g0175641 vs. NCBI nr
Match: XP_038903077.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Benincasa hispida] >XP_038903078.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Benincasa hispida])

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 160/166 (96.39%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATADVCDANAAHVTNGDLRVLQPKF+IYGQRRAFSGQIVTVKVFEDNVLVRQLLET
Sbjct: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFDIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KGEGRVLVIDGNGSRRCALLGGNLGQL+ NNGWAGIVVNGCIRDVDEINNCDIGVRALGT
Sbjct: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLSHNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKGMG+KHVVL+IGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGEKHVVLEIGGTLIHEGEWLYADSDGILVSKFELSV 166

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BLAST of Cmc06g0175641 vs. NCBI nr
Match: XP_023540534.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >XP_023540535.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >KAG7028314.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.3 bits (791), Expect = 2.0e-80
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATAD+CDANAAHVT+GDLRVLQ KF+IYGQRRAFSG IVTVKVFEDNVLVRQLLE+
Sbjct: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           +GEGRVLVIDGNGSRRCALLGGNLGQ+AQ+ GWAG+VVNGCIRDVDEINNCD+GVRALGT
Sbjct: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKG+G+KHV + IGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 166

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BLAST of Cmc06g0175641 vs. NCBI nr
Match: KAG6596786.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 309.3 bits (791), Expect = 2.0e-80
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATAD+CDANAAHVT+GDLRVLQ KF+IYGQRRAFSG IVTVKVFEDNVLVRQLLE+
Sbjct: 14  MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 73

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           +GEGRVLVIDGNGSRRCALLGGNLGQ+AQ+ GWAG+VVNGCIRDVDEINNCD+GVRALGT
Sbjct: 74  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 133

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKG+G+KHV + IGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 134 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 179

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BLAST of Cmc06g0175641 vs. ExPASy Swiss-Prot
Match: Q9FH13 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 OS=Arabidopsis thaliana OX=3702 GN=At5g56260 PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.0e-70
Identity = 128/166 (77.11%), Postives = 145/166 (87.35%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAA ATA+ CD+NA  ++NGDLR L P F+IYGQRR FSG IVT+KVFEDNVLVR  LET
Sbjct: 1   MAAFATAEACDSNAELISNGDLRALHPIFKIYGQRRCFSGPIVTLKVFEDNVLVRNQLET 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KGEG VLVIDG GS RCAL+GGNLGQLAQNNGW+GIVVNGC+RDVDEIN+CD+GVRALG+
Sbjct: 61  KGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCDVGVRALGS 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKS KKG G+K+V + IGGTLI +GEWLYAD DGIL+SK ELSV
Sbjct: 121 NPLKSTKKGHGEKNVPVHIGGTLIRDGEWLYADSDGILISKTELSV 166

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BLAST of Cmc06g0175641 vs. ExPASy Swiss-Prot
Match: Q9FFE0 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 OS=Arabidopsis thaliana OX=3702 GN=At5g16450 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-60
Identity = 112/166 (67.47%), Postives = 135/166 (81.33%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MA   TA+VCDAN   + +G LR LQP F+IYG+R+ FSG +VTVKVFEDN L+RQ +E 
Sbjct: 1   MAFVTTAEVCDANQELIRSGQLRALQPIFQIYGRRQIFSGPVVTVKVFEDNGLIRQFIEE 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KG GRVLV+DG GS+RCA+LGGN    AQNNGWAGIVVNGCIRDVDEIN CDIGVRAL +
Sbjct: 61  KGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           +P+K++KKG+G++ V + I GT I +GEWLYAD DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166

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BLAST of Cmc06g0175641 vs. ExPASy Swiss-Prot
Match: Q9M8R9 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 OS=Arabidopsis thaliana OX=3702 GN=At3g02770 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.8e-60
Identity = 112/166 (67.47%), Postives = 133/166 (80.12%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MA   TA+VCDAN   + +G LR LQP F+IYG+R+ FSG +VTVKVFEDN L+R  LE 
Sbjct: 1   MAFVTTAEVCDANQEMIRSGQLRALQPVFQIYGRRQIFSGPVVTVKVFEDNGLIRHFLEE 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KG GRVLV+DG GS RCA+LGGN    AQNNGWAGI+VNGCIRDVDEIN CDIGVRAL +
Sbjct: 61  KGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           +P+K++KKG+G++ V L I GT I +GEWLYAD DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQIELSV 166

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BLAST of Cmc06g0175641 vs. ExPASy Swiss-Prot
Match: Q46ZV6 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) OX=264198 GN=Reut_A1963 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.9e-50
Identity = 86/159 (54.09%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 6   TADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLETKGEGR 65
           T D+CDAN   + +G LRV+ P F  +G+++AF+G   T+K+FEDN LVR+ LE+ G+GR
Sbjct: 5   TTDLCDANEPRLADGTLRVMAPVFRAFGKQQAFAGPAATLKIFEDNSLVREALESPGQGR 64

Query: 66  VLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGTNPLKS 125
           VLV+DG GS RCAL+GGNLG LA+ NGW GI+VNGC+RD  E++ CDIG+RAL  +P KS
Sbjct: 65  VLVVDGGGSLRCALVGGNLGLLAEKNGWVGIIVNGCVRDTGELDVCDIGIRALAAHPQKS 124

Query: 126 NKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFEL 165
            K+G G++ V +Q+ G ++  G W+Y D DG+LVS+ +L
Sbjct: 125 QKRGAGERDVAVQMPGAVVRPGNWIYVDADGVLVSEEKL 163

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BLAST of Cmc06g0175641 vs. ExPASy Swiss-Prot
Match: Q13X79 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Paraburkholderia xenovorans (strain LB400) OX=266265 GN=Bxeno_A2772 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 7.2e-49
Identity = 89/160 (55.62%), Postives = 117/160 (73.12%), Query Frame = 0


Query: 5   ATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLETKGEG 64
           ATAD+CDA+   +  G LRVL+P F ++ +   FSG+ VT+KVFEDN LVR  LE KG G
Sbjct: 4   ATADLCDAHEDQLALGTLRVLEPVFHLFSRAGCFSGEAVTLKVFEDNALVRATLEEKGAG 63

Query: 65  RVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGTNPLK 124
           RVLV+DG GS+RCAL+GGNL Q+AQ NGWAGIV+NGC+RD  E+N  ++G+ AL T P +
Sbjct: 64  RVLVVDGGGSQRCALVGGNLAQIAQQNGWAGIVLNGCVRDTLELNEVNVGIAALATCPRR 123

Query: 125 SNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFEL 165
             K G G++ V +Q+ G L+  GEW+YAD DG+LV+   L
Sbjct: 124 GQKLGTGERGVAVQLPGALVRPGEWIYADSDGVLVASAAL 163

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BLAST of Cmc06g0175641 vs. ExPASy TrEMBL
Match: A0A1S3BKF1 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC103490998 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET
Sbjct: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT
Sbjct: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 166

[Close]

BLAST of Cmc06g0175641 vs. ExPASy TrEMBL
Match: A0A5D3D743 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00240 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET
Sbjct: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT
Sbjct: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 166

[Close]

BLAST of Cmc06g0175641 vs. ExPASy TrEMBL
Match: A0A0A0L5X9 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G044520 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.2e-88
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET
Sbjct: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCD+GVRALG 
Sbjct: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDVGVRALGA 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKGMG+KHVVLQIGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGEKHVVLQIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of Cmc06g0175641 vs. ExPASy TrEMBL
Match: A0A6J1GE55 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita moschata OX=3662 GN=LOC111453129 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 147/166 (88.55%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATAD+CDANAAHVT+GDLRVLQ KF++YGQRRAFSG IVTVKVFEDNVLVRQLLE+
Sbjct: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKVYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           +GEGRVLVIDGNGSRRCALLGGNLGQ+AQ+ GWAG+VVNGCIRDVDEINNCD+GVRALGT
Sbjct: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKG+G+KHV + IGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of Cmc06g0175641 vs. ExPASy TrEMBL
Match: A0A6J1KXS9 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita maxima OX=3661 GN=LOC111498522 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.8e-80
Identity = 147/166 (88.55%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAAPATAD+CDANAAHV +GDLRVLQ KF+IYGQRRAFSG IVTVKVFEDNVLVRQLLE+
Sbjct: 1   MAAPATADICDANAAHVISGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           +GEGRVLVIDGNGSRRCALLGGNLGQ+AQ+ GWAG+VVNGCIRDVDEINNCD+GVRALGT
Sbjct: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKSNKKG+G+KHV + IGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of Cmc06g0175641 vs. TAIR 10
Match: AT5G56260.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-71
Identity = 128/166 (77.11%), Postives = 145/166 (87.35%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MAA ATA+ CD+NA  ++NGDLR L P F+IYGQRR FSG IVT+KVFEDNVLVR  LET
Sbjct: 1   MAAFATAEACDSNAELISNGDLRALHPIFKIYGQRRCFSGPIVTLKVFEDNVLVRNQLET 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KGEG VLVIDG GS RCAL+GGNLGQLAQNNGW+GIVVNGC+RDVDEIN+CD+GVRALG+
Sbjct: 61  KGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCDVGVRALGS 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           NPLKS KKG G+K+V + IGGTLI +GEWLYAD DGIL+SK ELSV
Sbjct: 121 NPLKSTKKGHGEKNVPVHIGGTLIRDGEWLYADSDGILISKTELSV 166

[Close]

BLAST of Cmc06g0175641 vs. TAIR 10
Match: AT5G16450.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 234.2 bits (596), Expect = 7.6e-62
Identity = 112/166 (67.47%), Postives = 135/166 (81.33%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MA   TA+VCDAN   + +G LR LQP F+IYG+R+ FSG +VTVKVFEDN L+RQ +E 
Sbjct: 1   MAFVTTAEVCDANQELIRSGQLRALQPIFQIYGRRQIFSGPVVTVKVFEDNGLIRQFIEE 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KG GRVLV+DG GS+RCA+LGGN    AQNNGWAGIVVNGCIRDVDEIN CDIGVRAL +
Sbjct: 61  KGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           +P+K++KKG+G++ V + I GT I +GEWLYAD DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of Cmc06g0175641 vs. TAIR 10
Match: AT5G16450.2 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 234.2 bits (596), Expect = 7.6e-62
Identity = 112/166 (67.47%), Postives = 135/166 (81.33%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MA   TA+VCDAN   + +G LR LQP F+IYG+R+ FSG +VTVKVFEDN L+RQ +E 
Sbjct: 1   MAFVTTAEVCDANQELIRSGQLRALQPIFQIYGRRQIFSGPVVTVKVFEDNGLIRQFIEE 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KG GRVLV+DG GS+RCA+LGGN    AQNNGWAGIVVNGCIRDVDEIN CDIGVRAL +
Sbjct: 61  KGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           +P+K++KKG+G++ V + I GT I +GEWLYAD DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of Cmc06g0175641 vs. TAIR 10
Match: AT3G02770.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 233.4 bits (594), Expect = 1.3e-61
Identity = 112/166 (67.47%), Postives = 133/166 (80.12%), Query Frame = 0


Query: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60
           MA   TA+VCDAN   + +G LR LQP F+IYG+R+ FSG +VTVKVFEDN L+R  LE 
Sbjct: 1   MAFVTTAEVCDANQEMIRSGQLRALQPVFQIYGRRQIFSGPVVTVKVFEDNGLIRHFLEE 60

Query: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120
           KG GRVLV+DG GS RCA+LGGN    AQNNGWAGI+VNGCIRDVDEIN CDIGVRAL +
Sbjct: 61  KGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 167
           +P+K++KKG+G++ V L I GT I +GEWLYAD DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQIELSV 166

The following BLAST results are available for this feature:

BLAST of Cmc06g0175641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448991.1	2.4e-89	100.00	PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] ...	[more]
XP_004148273.1	1.7e-87	97.59	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_0041...	[more]
XP_038903077.1	1.4e-86	96.39	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Benincasa hispida] >XP_03...	[more]
XP_023540534.1	2.0e-80	89.16	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pep...	[more]
KAG6596786.1	2.0e-80	89.16	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyro...	[more]

BLAST of Cmc06g0175641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH13	2.0e-70	77.11	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 OS=Arabidopsis thaliana OX...	[more]
Q9FFE0	1.1e-60	67.47	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 OS=Arabidopsis thaliana OX...	[more]
Q9M8R9	1.8e-60	67.47	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 OS=Arabidopsis thaliana OX...	[more]
Q46ZV6	2.9e-50	54.09	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cupriavidus pinatubonensi...	[more]
Q13X79	7.2e-49	55.63	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Paraburkholderia xenovora...	[more]

BLAST of Cmc06g0175641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BKF1	1.1e-89	100.00	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC1034909...	[more]
A0A5D3D743	1.1e-89	100.00	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0L5X9	8.2e-88	97.59	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G0...	[more]
A0A6J1GE55	1.3e-80	88.55	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KXS9	4.8e-80	88.55	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Cmc06g0175641 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56260.1	1.4e-71	77.11	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT5G16450.1	7.6e-62	67.47	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT5G16450.2	7.6e-62	67.47	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT3G02770.1	1.3e-61	67.47	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.50.30.40		coord: 2..166 e-value: 6.3E-51 score: 174.3
None	No IPR available	PANTHER	PTHR33254:SF22	4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE	coord: 1..166
None	No IPR available	PANTHER	PTHR33254	4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED	coord: 1..166
IPR010203	Regulator of ribonuclease activity A	TIGRFAM	TIGR01935	TIGR01935	coord: 6..160 e-value: 1.8E-63 score: 210.9
IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein	PFAM	PF03737	RraA-like	coord: 6..159 e-value: 2.3E-45 score: 154.4
IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein	CDD	cd16841	RraA_family	coord: 7..160 e-value: 8.81288E-58 score: 175.726
IPR036704	Ribonuclease E inhibitor RraA/RraA-like superfamily	SUPERFAMILY	89562	RraA-like	coord: 5..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0175641.1	Cmc06g0175641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043086	negative regulation of catalytic activity
biological_process	GO:0051252	regulation of RNA metabolic process
molecular_function	GO:0047443	4-hydroxy-4-methyl-2-oxoglutarate aldolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008948	oxaloacetate decarboxylase activity
molecular_function	GO:0008428	ribonuclease inhibitor activity