Cmc06g0174411 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0174411
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 31396907 .. 31397482 (+)
RNA-Seq Expression	Cmc06g0174411
Synteny	Cmc06g0174411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCAGCAGAATTGAAAGAACTGAAAGTACAGTTACAGGAGTTGCTTGATAAGGGCTTCATTCGACCAAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACTGTTAAGAATAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGTTGAGGATTAAGGATGCTGATGTACCGAAGACGACCTTTCGTTCCAGATACAGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACGATGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACTCTTCTGGATAATAAATTGTTTGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCGGTGTCCTTTCTAG

mRNA sequence

ATGGCCCCAGCAGAATTGAAAGAACTGAAAGTACAGTTACAGGAGTTGCTTGATAAGGGCTTCATTCGACCAAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACTGTTAAGAATAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGTTGAGGATTAAGGATGCTGATGTACCGAAGACGACCTTTCGTTCCAGATACAGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACGATGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACTCTTCTGGATAATAAATTGTTTGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCGGTGTCCTTTCTAG

Coding sequence (CDS)

ATGGCCCCAGCAGAATTGAAAGAACTGAAAGTACAGTTACAGGAGTTGCTTGATAAGGGCTTCATTCGACCAAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACTGTTAAGAATAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGTTGAGGATTAAGGATGCTGATGTACCGAAGACGACCTTTCGTTCCAGATACAGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACGATGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACTCTTCTGGATAATAAATTGTTTGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCGGTGTCCTTTCTAG

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLTNAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFSKCEFWLKRCPF

Homology

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BLAST of Cmc06g0174411 vs. NCBI nr
Match: KAA0040402.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 2.5e-98
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 334 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 393

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 394 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 453

Query: 121 NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
           NAPT+FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTL DNKL+AKFS
Sbjct: 454 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 513

Query: 181 KCEFWLKRCPF 192
           KCEFWLK+  F
Sbjct: 514 KCEFWLKQVSF 524

[Close]

BLAST of Cmc06g0174411 vs. NCBI nr
Match: KAA0036671.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 368.2 bits (944), Expect = 4.2e-98
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 833  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 892

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 893  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 952

Query: 121  NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
            NAP +FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTL DNKL+AKFS
Sbjct: 953  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 1012

Query: 181  KCEFWLKRCPF 192
            KCEFWLK+  F
Sbjct: 1013 KCEFWLKQVSF 1023

[Close]

BLAST of Cmc06g0174411 vs. NCBI nr
Match: KAA0066266.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 368.2 bits (944), Expect = 4.2e-98
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 154 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 213

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 214 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 273

Query: 121 NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
           NAP +FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTL DNKL+AKFS
Sbjct: 274 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 333

Query: 181 KCEFWLKRCPF 192
           KCEFWLK+  F
Sbjct: 334 KCEFWLKQVSF 344

[Close]

BLAST of Cmc06g0174411 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 368.2 bits (944), Expect = 4.2e-98
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 580 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 639

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 640 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 699

Query: 121 NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
           NAP +FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTL DNKL+AKFS
Sbjct: 700 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 759

Query: 181 KCEFWLKRCPF 192
           KCEFWLK+  F
Sbjct: 760 KCEFWLKQVSF 770

[Close]

BLAST of Cmc06g0174411 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 368.2 bits (944), Expect = 4.2e-98
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 834  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 893

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 894  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 953

Query: 121  NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
            NAP +FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTL DNKL+AKFS
Sbjct: 954  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 1013

Query: 181  KCEFWLKRCPF 192
            KCEFWLK+  F
Sbjct: 1014 KCEFWLKQVSF 1024

[Close]

BLAST of Cmc06g0174411 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 165.6 bits (418), Expect = 5.4e-40
Identity = 83/178 (46.63%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLTNAPTMF 126
           D+L  ++  A +F+ +DL SGYHQ+ ++  D  KT F +    YE+ VM FGL NAP+ F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFSKCEF 185
              M   FR+    FV V++DDILI+S++  EH +HL  VL+ L +  L  K  KC+F
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 785

[Close]

BLAST of Cmc06g0174411 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 5.4e-40
Identity = 83/178 (46.63%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLTNAPTMF 126
           D+L  ++  A +F+ +DL SGYHQ+ ++  D  KT F +    YE+ VM FGL NAP+ F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFSKCEF 185
              M   FR+    FV V++DDILI+S++  EH +HL  VL+ L +  L  K  KC+F
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 811

[Close]

BLAST of Cmc06g0174411 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.6e-37
Identity = 72/191 (37.70%), Postives = 121/191 (63.35%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++  D  K  FR     +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
            AP  F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L +  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKRCPF 192
           KCEF   +  F
Sbjct: 600 KCEFHQSQVKF 610

[Close]

BLAST of Cmc06g0174411 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.6e-37
Identity = 72/191 (37.70%), Postives = 121/191 (63.35%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++  D  K  FR     +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
            AP  F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L +  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKRCPF 192
           KCEF   +  F
Sbjct: 600 KCEFHQSQVKF 610

[Close]

BLAST of Cmc06g0174411 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.6e-37
Identity = 72/191 (37.70%), Postives = 121/191 (63.35%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++  D  K  FR     +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
            AP  F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L +  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKRCPF 192
           KCEF   +  F
Sbjct: 600 KCEFHQSQVKF 610

[Close]

BLAST of Cmc06g0174411 vs. ExPASy TrEMBL
Match: A0A5A7TAB9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00160 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 334 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 393

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 394 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 453

Query: 121 NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
           NAPT+FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTL DNKL+AKFS
Sbjct: 454 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 513

Query: 181 KCEFWLKRCPF 192
           KCEFWLK+  F
Sbjct: 514 KCEFWLKQVSF 524

[Close]

BLAST of Cmc06g0174411 vs. ExPASy TrEMBL
Match: A0A5A7VIT9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003090 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 154 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 213

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 214 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 273

Query: 121 NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
           NAP +FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTL DNKL+AKFS
Sbjct: 274 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 333

Query: 181 KCEFWLKRCPF 192
           KCEFWLK+  F
Sbjct: 334 KCEFWLKQVSF 344

[Close]

BLAST of Cmc06g0174411 vs. ExPASy TrEMBL
Match: A0A5A7TXE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00060 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 377 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 436

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 437 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 496

Query: 121 NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
           NAP +FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTL DNKL+AKFS
Sbjct: 497 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 556

Query: 181 KCEFWLKRCPF 192
           KCEFWLK+  F
Sbjct: 557 KCEFWLKQVSF 567

[Close]

BLAST of Cmc06g0174411 vs. ExPASy TrEMBL
Match: A0A5A7TP96 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00630 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 906  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 965

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 966  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 1025

Query: 121  NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
            NAP +FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTL DNKL+AKFS
Sbjct: 1026 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 1085

Query: 181  KCEFWLKRCPF 192
            KCEFWLK+  F
Sbjct: 1086 KCEFWLKQVSF 1096

[Close]

BLAST of Cmc06g0174411 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 834  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 893

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDADVPKTTFRSRYRHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKT FRSRY HYEFIVMSFGLT
Sbjct: 894  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 953

Query: 121  NAPTMFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLLDNKLFAKFS 180
            NAP +FMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTL DNKL+AKFS
Sbjct: 954  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 1013

Query: 181  KCEFWLKRCPF 192
            KCEFWLK+  F
Sbjct: 1014 KCEFWLKQVSF 1024

The following BLAST results are available for this feature:

BLAST of Cmc06g0174411 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040402.1	2.5e-98	94.24	pol protein [Cucumis melo var. makuwa]	[more]
KAA0036671.1	4.2e-98	94.24	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066266.1	4.2e-98	94.24	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	4.2e-98	94.24	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	4.2e-98	94.24	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0174411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	5.4e-40	46.63	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.4e-40	46.63	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	5.6e-37	37.70	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	5.6e-37	37.70	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	5.6e-37	37.70	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0174411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAB9	1.2e-98	94.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35...	[more]
A0A5A7VIT9	2.0e-98	94.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7TXE4	2.0e-98	94.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5A7TP96	2.0e-98	94.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold58...	[more]
A0A5D3BPI1	2.0e-98	94.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Cmc06g0174411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..191 e-value: 4.6E-81 score: 273.2
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 4.6E-81 score: 273.2
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..186
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..186
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..191 e-value: 1.77484E-89 score: 257.909
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..186 e-value: 1.2E-26 score: 93.7
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 17..191 score: 10.146555
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0174411.1	Cmc06g0174411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding