Cmc06g0171001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0171001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 26702053 .. 26702274 (-)
RNA-Seq Expression	Cmc06g0171001
Synteny	Cmc06g0171001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGCAAAAAATATCCATTTCCCATAATCACTGACTTGTTTGACCGCTTACATGGGGAAAAGTATTTTTCAAAATTGAATTTGCGATCGGGATACTACCAAGTGAGAATTACTGAGGGAGACGAGCCTAAGACAACCTGTGTCGCCAGATATGGAGCGTTTGAGTTCCTCGTAATGCCATTTGGTCTTACCAATGCCCCTGCAACTTTTTGTACGTGA

mRNA sequence

ATGGTTCGCAAAAAATATCCATTTCCCATAATCACTGACTTGTTTGACCGCTTACATGGGGAAAAGTATTTTTCAAAATTGAATTTGCGATCGGGATACTACCAAGTGAGAATTACTGAGGGAGACGAGCCTAAGACAACCTGTGTCGCCAGATATGGAGCGTTTGAGTTCCTCGTAATGCCATTTGGTCTTACCAATGCCCCTGCAACTTTTTGTACGTGA

Coding sequence (CDS)

ATGGTTCGCAAAAAATATCCATTTCCCATAATCACTGACTTGTTTGACCGCTTACATGGGGAAAAGTATTTTTCAAAATTGAATTTGCGATCGGGATACTACCAAGTGAGAATTACTGAGGGAGACGAGCCTAAGACAACCTGTGTCGCCAGATATGGAGCGTTTGAGTTCCTCGTAATGCCATTTGGTCTTACCAATGCCCCTGCAACTTTTTGTACGTGA

Protein sequence

MVRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMPFGLTNAPATFCT

Homology

[Close]

BLAST of Cmc06g0171001 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VR KYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 726 VRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMP 785

Query: 62  FGLTNAPATFCT 74
           FGLTNAPATFCT
Sbjct: 786 FGLTNAPATFCT 797

[Close]

BLAST of Cmc06g0171001 vs. NCBI nr
Match: TYK28653.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VR KYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 186 VRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMP 245

Query: 62  FGLTNAPATFCT 74
           FGLTNAPATFCT
Sbjct: 246 FGLTNAPATFCT 257

[Close]

BLAST of Cmc06g0171001 vs. NCBI nr
Match: KAA0057285.1 (uncharacterized protein E6C27_scaffold280G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VR KYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 186 VRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMP 245

Query: 62  FGLTNAPATFCT 74
           FGLTNAPATFCT
Sbjct: 246 FGLTNAPATFCT 257

[Close]

BLAST of Cmc06g0171001 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VR KYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 730 VRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMP 789

Query: 62  FGLTNAPATFCT 74
           FGLTNAPATFCT
Sbjct: 790 FGLTNAPATFCT 801

[Close]

BLAST of Cmc06g0171001 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VR KYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 730 VRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMP 789

Query: 62  FGLTNAPATFCT 74
           FGLTNAPATFCT
Sbjct: 790 FGLTNAPATFCT 801

[Close]

BLAST of Cmc06g0171001 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-24
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 2  VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
          ++ KYP P + DLFDRL    +F+KL+LRSGY+QVRI +GDEPKTTCV RYG+FEF VMP
Sbjct: 20 IKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMP 79

Query: 62 FGLTNAPATFC 73
          FGLTNA ATFC
Sbjct: 80 FGLTNALATFC 90

[Close]

BLAST of Cmc06g0171001 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 6   YPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMPFGLT 65
           YP P+I  L  ++ G   F+KL+L+S Y+ +R+ +GDE K       G FE+LVMP+G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 66  NAPATF 72
            APA F
Sbjct: 540 TAPAHF 545

[Close]

BLAST of Cmc06g0171001 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 6   YPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMPFGLT 65
           YP P+I  L  ++ G   F+KL+L+S Y+ +R+ +GDE K       G FE+LVMP+G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 66  NAPATF 72
            APA F
Sbjct: 540 TAPAHF 545

[Close]

BLAST of Cmc06g0171001 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 6   YPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMPFGLT 65
           YP P+I  L  ++ G   F+KL+L+S Y+ +R+ +GDE K       G FE+LVMP+G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 66  NAPATF 72
            APA F
Sbjct: 540 TAPAHF 545

[Close]

BLAST of Cmc06g0171001 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 6   YPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMPFGLT 65
           YP P+I  L  ++ G   F+KL+L+S Y+ +R+ +GDE K       G FE+LVMP+G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 66  NAPATF 72
            APA F
Sbjct: 540 TAPAHF 545

[Close]

BLAST of Cmc06g0171001 vs. ExPASy TrEMBL
Match: A0A5A7U3I4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00230 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VR KYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 238 VRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIVEGDEPKTTCVTRYGAFEFLVMP 297

Query: 62  FGLTNAPATFCT 74
           FGLTNAPATFCT
Sbjct: 298 FGLTNAPATFCT 309

[Close]

BLAST of Cmc06g0171001 vs. ExPASy TrEMBL
Match: A0A5D3B9T5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00320 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VRKKYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 638 VRKKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMP 697

Query: 62  FGLTNAPATFCT 74
           FGLTNAPA FCT
Sbjct: 698 FGLTNAPANFCT 709

[Close]

BLAST of Cmc06g0171001 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VR KYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 730 VRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMP 789

Query: 62  FGLTNAPATFCT 74
           FGLTNAPATFCT
Sbjct: 790 FGLTNAPATFCT 801

[Close]

BLAST of Cmc06g0171001 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VR KYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 730 VRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMP 789

Query: 62  FGLTNAPATFCT 74
           FGLTNAPATFCT
Sbjct: 790 FGLTNAPATFCT 801

[Close]

BLAST of Cmc06g0171001 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 2   VRKKYPFPIITDLFDRLHGEKYFSKLNLRSGYYQVRITEGDEPKTTCVARYGAFEFLVMP 61
           VR KYP PIITDLFDRLHG KYFSKL+LRSGYYQVRI EGDEPKTTCV RYGAFEFLVMP
Sbjct: 730 VRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMP 789

Query: 62  FGLTNAPATFCT 74
           FGLTNAPATFCT
Sbjct: 790 FGLTNAPATFCT 801

The following BLAST results are available for this feature:

BLAST of Cmc06g0171001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067557.1	2.2e-31	91.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK28653.1	2.2e-31	91.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0057285.1	2.2e-31	91.67	uncharacterized protein E6C27_scaffold280G001260 [Cucumis melo var. makuwa]	[more]
KAA0037220.1	2.2e-31	91.67	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	2.2e-31	91.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0171001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	1.2e-24	70.42	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P0CT41	1.5e-11	43.94	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.5e-11	43.94	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.5e-11	43.94	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.5e-11	43.94	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0171001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3I4	1.1e-31	91.67	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3B9T5	1.1e-31	91.67	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C4R1	1.1e-31	91.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	1.1e-31	91.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	1.1e-31	91.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

BLAST of Cmc06g0171001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 6..72 e-value: 1.2E-24 score: 88.8
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..66 e-value: 1.2E-24 score: 88.8
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 2..71
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..71
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..72 e-value: 1.03375E-29 score: 101.133
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0171001.1	Cmc06g0171001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity