Cmc06g0170621 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0170621
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 25967231 .. 25967707 (-)
RNA-Seq Expression	Cmc06g0170621
Synteny	Cmc06g0170621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTATATCTTGGTTGGATATTGCAATGCCAACTGGGCAGGCTCTTCTGATGACAGGAAAAGCACATCTGGAGGATGTTTCTTTCTTGGAAATAATCTTATCTCATGGCTCAATAAGAAACAAAATTGTGTTTTCCTGTCTACTACAAAAGCTGAGTATATTGCAGTAGGGAGTGCTTGTACTCAATTAATTTGGATGAAAAATATGTTGCATGAGTATGGATTCACACAAGATATTATGACATTATACTGTGGTATTATGAGTGCTATTGATATATTAAAAAATCCAATTCAGCATATTCGAACTAAACATATTGATATAAGGCACCATTTTATTAGAGAGCTTATTGAAAATAAGATTATTATACTGGAACATATTCGCTCCAATTTGCAATTGGCATATATATTCACTAAGCTGCTTGATGCAAACACATTTGAGCATTTACGTGCTGGCTTAGGAGTGTGTCGACTTTAA

mRNA sequence

ATGACTTATATCTTGGTTGGATATTGCAATGCCAACTGGGCAGGCTCTTCTGATGACAGGAAAAGCACATCTGGAGGATGTTTCTTTCTTGGAAATAATCTTATCTCATGGCTCAATAAGAAACAAAATTGTGTTTTCCTGTCTACTACAAAAGCTGAGTATATTGCAGTAGGGAGTGCTTGTACTCAATTAATTTGGATGAAAAATATGTTGCATGAGTATGGATTCACACAAGATATTATGACATTATACTGTGGTATTATGAGTGCTATTGATATATTAAAAAATCCAATTCAGCATATTCGAACTAAACATATTGATATAAGGCACCATTTTATTAGAGAGCTTATTGAAAATAAGATTATTATACTGGAACATATTCGCTCCAATTTGCAATTGGCATATATATTCACTAAGCTGCTTGATGCAAACACATTTGAGCATTTACGTGCTGGCTTAGGAGTGTGTCGACTTTAA

Coding sequence (CDS)

ATGACTTATATCTTGGTTGGATATTGCAATGCCAACTGGGCAGGCTCTTCTGATGACAGGAAAAGCACATCTGGAGGATGTTTCTTTCTTGGAAATAATCTTATCTCATGGCTCAATAAGAAACAAAATTGTGTTTTCCTGTCTACTACAAAAGCTGAGTATATTGCAGTAGGGAGTGCTTGTACTCAATTAATTTGGATGAAAAATATGTTGCATGAGTATGGATTCACACAAGATATTATGACATTATACTGTGGTATTATGAGTGCTATTGATATATTAAAAAATCCAATTCAGCATATTCGAACTAAACATATTGATATAAGGCACCATTTTATTAGAGAGCTTATTGAAAATAAGATTATTATACTGGAACATATTCGCTCCAATTTGCAATTGGCATATATATTCACTAAGCTGCTTGATGCAAACACATTTGAGCATTTACGTGCTGGCTTAGGAGTGTGTCGACTTTAA

Protein sequence

MTYILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQLIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIIILEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL

Homology

[Close]

BLAST of Cmc06g0170621 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 8.3e-68
Identity = 127/156 (81.41%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 2   TYILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSAC 61
           T  LVGYC+A+WAGS+DDRKSTSGGCFFLGNNLISWL+KKQNCV LSTT+AEYIA GS C
Sbjct: 127 TPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEYIAAGSGC 186

Query: 62  TQLIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKI 121
           TQLIWMKNMLHEYGF QD MTLYC   SAIDI KNP+QH RTKHIDIRHHFIREL+E+K+
Sbjct: 187 TQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIRELVEDKV 246

Query: 122 IILEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCR 158
           I L+HIRSNLQL  IFTK LDA++FE+LRAGLGVCR
Sbjct: 247 IKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCR 282

[Close]

BLAST of Cmc06g0170621 vs. NCBI nr
Match: AAO73529.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 235.0 bits (598), Expect = 4.6e-58
Identity = 108/155 (69.68%), Postives = 130/155 (83.87%), Query Frame = 0


Query: 4    ILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 63
            +LVGYC+A+WAGS+DDRKSTSGGCF+LGNNLISW +KKQNCV LST +AEYIA GS+C+Q
Sbjct: 1420 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1479

Query: 64   LIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIII 123
            L+WMK ML EY   QD+MTLYC  MSAI+I KNP+QH RTKHIDIRHH+IREL+++K+I 
Sbjct: 1480 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRELVDDKVIT 1539

Query: 124  LEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL 159
            LEH+ +  Q+A IFTK LDA  FE LR  LG+C L
Sbjct: 1540 LEHVDTEEQIADIFTKALDAKQFEKLRGKLGICLL 1574

[Close]

BLAST of Cmc06g0170621 vs. NCBI nr
Match: AAO73521.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 234.6 bits (597), Expect = 6.0e-58
Identity = 107/155 (69.03%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 4    ILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 63
            +LVGYC+A+WAGS+DDRKSTSGGCF+LGNNLISW +KKQNCV LST +AEYIA GS+C+Q
Sbjct: 1417 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1476

Query: 64   LIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIII 123
            L+WMK ML EY   QD+MTLYC  MSAI+I KNP+QH RTKHIDIRHH+IR+L+++K+I 
Sbjct: 1477 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 1536

Query: 124  LEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL 159
            L+H+ +  Q+A IFTK LDAN FE LR  LG+C L
Sbjct: 1537 LKHVDTEEQIADIFTKALDANQFEKLRGKLGICLL 1571

[Close]

BLAST of Cmc06g0170621 vs. NCBI nr
Match: AAO73527.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 234.6 bits (597), Expect = 6.0e-58
Identity = 107/155 (69.03%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 4    ILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 63
            +LVGYC+A+WAGS+DDRKSTSGGCF+LGNNLISW +KKQNCV LST +AEYIA GS+C+Q
Sbjct: 1419 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1478

Query: 64   LIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIII 123
            L+WMK ML EY   QD+MTLYC  MSAI+I KNP+QH RTKHIDIRHH+IR+L+++K+I 
Sbjct: 1479 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 1538

Query: 124  LEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL 159
            L+H+ +  Q+A IFTK LDAN FE LR  LG+C L
Sbjct: 1539 LKHVDTEEQIADIFTKALDANQFEKLRGKLGICLL 1573

[Close]

BLAST of Cmc06g0170621 vs. NCBI nr
Match: AAO73523.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 234.2 bits (596), Expect = 7.8e-58
Identity = 107/155 (69.03%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 4    ILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 63
            +LVGYC+A+WAGS+DDRKSTSGGCF+LGNNLISW +KKQNCV LST +AEYIA GS+C+Q
Sbjct: 1419 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1478

Query: 64   LIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIII 123
            L+WMK ML EY   QD+MTLYC  MSAI+I KNP+QH RTKHIDIRHH+IR+L+++K+I 
Sbjct: 1479 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 1538

Query: 124  LEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL 159
            L+H+ +  Q+A IFTK LDAN FE LR  LG+C L
Sbjct: 1539 LKHVDTEEQIADIFTKALDANQFEKLRGKLGICVL 1573

[Close]

BLAST of Cmc06g0170621 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 65/152 (42.76%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 4    ILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 63
            IL GY +A+ AG  D+RKS++G  F      ISW +K Q CV LSTT+AEYIA      +
Sbjct: 1174 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1233

Query: 64   LIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIII 123
            +IW+K  L E G  Q    +YC   SAID+ KN + H RTKHID+R+H+IRE+++++ + 
Sbjct: 1234 MIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLK 1293

Query: 124  LEHIRSNLQLAYIFTKLLDANTFEHLRAGLGV 156
            +  I +N   A + TK++  N FE  +  +G+
Sbjct: 1294 VLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc06g0170621 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 66/153 (43.14%), Postives = 95/153 (62.09%), Query Frame = 0


Query: 5    LVGYCNANWAGSSDDRKSTSGGCFFLGN-NLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 64
            ++GY +++WAGS  DRKST+G  F + + NLI W  K+QN V  S+T+AEY+A+  A  +
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 65   LIWMKNMLHEYGF-TQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKII 124
             +W+K +L       ++ + +Y      I I  NP  H R KHIDI++HF RE ++N +I
Sbjct: 1308 ALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVI 1367

Query: 125  ILEHIRSNLQLAYIFTKLLDANTFEHLRAGLGV 156
             LE+I +  QLA IFTK L A  F  LR  LG+
Sbjct: 1368 CLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc06g0170621 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-21
Identity = 57/158 (36.08%), Postives = 92/158 (58.23%), Query Frame = 0


Query: 2    TYILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSAC 61
            T  L  Y +A+WAG  DD  ST+G   +LG++ ISW +KKQ  V  S+T+AEY +V +  
Sbjct: 1306 TLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTS 1365

Query: 62   TQLIWMKNMLHEYGF-TQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENK 121
            +++ W+ ++L E G        +YC  + A  +  NP+ H R KHI I +HFIR  +++ 
Sbjct: 1366 SEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSG 1425

Query: 122  IIILEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL 159
             + + H+ ++ QLA   TK L    F++  + +GV R+
Sbjct: 1426 ALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

[Close]

BLAST of Cmc06g0170621 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.7e-21
Identity = 56/158 (35.44%), Postives = 92/158 (58.23%), Query Frame = 0


Query: 2    TYILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSAC 61
            T  L  Y +A+WAG +DD  ST+G   +LG++ ISW +KKQ  V  S+T+AEY +V +  
Sbjct: 1289 TLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTS 1348

Query: 62   TQLIWMKNMLHEYGF-TQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENK 121
            ++L W+ ++L E G        +YC  + A  +  NP+ H R KHI + +HFIR  +++ 
Sbjct: 1349 SELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSG 1408

Query: 122  IIILEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL 159
             + + H+ ++ QLA   TK L    F++    +GV ++
Sbjct: 1409 ALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKV 1446

[Close]

BLAST of Cmc06g0170621 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-10
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 5   LVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQL 64
           LVGY +A+WAG  + R+STSG  F L    +SW +KKQ  V LS+T+ EY+A+  A  + 
Sbjct: 71  LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

Query: 65  IWM 68
           +W+
Sbjct: 131 VWL 133

[Close]

BLAST of Cmc06g0170621 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.0e-68
Identity = 127/156 (81.41%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 2   TYILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSAC 61
           T  LVGYC+A+WAGS+DDRKSTSGGCFFLGNNLISWL+KKQNCV LSTT+AEYIA GS C
Sbjct: 127 TPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEYIAAGSGC 186

Query: 62  TQLIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKI 121
           TQLIWMKNMLHEYGF QD MTLYC   SAIDI KNP+QH RTKHIDIRHHFIREL+E+K+
Sbjct: 187 TQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIRELVEDKV 246

Query: 122 IILEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCR 158
           I L+HIRSNLQL  IFTK LDA++FE+LRAGLGVCR
Sbjct: 247 IKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCR 282

[Close]

BLAST of Cmc06g0170621 vs. ExPASy TrEMBL
Match: Q84VH6 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.2e-58
Identity = 108/155 (69.68%), Postives = 130/155 (83.87%), Query Frame = 0


Query: 4    ILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 63
            +LVGYC+A+WAGS+DDRKSTSGGCF+LGNNLISW +KKQNCV LST +AEYIA GS+C+Q
Sbjct: 1420 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1479

Query: 64   LIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIII 123
            L+WMK ML EY   QD+MTLYC  MSAI+I KNP+QH RTKHIDIRHH+IREL+++K+I 
Sbjct: 1480 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRELVDDKVIT 1539

Query: 124  LEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL 159
            LEH+ +  Q+A IFTK LDA  FE LR  LG+C L
Sbjct: 1540 LEHVDTEEQIADIFTKALDAKQFEKLRGKLGICLL 1574

[Close]

BLAST of Cmc06g0170621 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 107/155 (69.03%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 4    ILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 63
            +LVGYC+A+WAGS+DDRKSTSGGCF+LGNNLISW +KKQNCV LST +AEYIA GS+C+Q
Sbjct: 1417 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1476

Query: 64   LIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIII 123
            L+WMK ML EY   QD+MTLYC  MSAI+I KNP+QH RTKHIDIRHH+IR+L+++K+I 
Sbjct: 1477 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 1536

Query: 124  LEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL 159
            L+H+ +  Q+A IFTK LDAN FE LR  LG+C L
Sbjct: 1537 LKHVDTEEQIADIFTKALDANQFEKLRGKLGICLL 1571

[Close]

BLAST of Cmc06g0170621 vs. ExPASy TrEMBL
Match: Q84VH8 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 107/155 (69.03%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 4    ILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 63
            +LVGYC+A+WAGS+DDRKSTSGGCF+LGNNLISW +KKQNCV LST +AEYIA GS+C+Q
Sbjct: 1419 MLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQ 1478

Query: 64   LIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIII 123
            L+WMK ML EY   QD+MTLYC  MSAI+I KNP+QH RTKHIDIRHH+IR+L+++K+I 
Sbjct: 1479 LVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVIT 1538

Query: 124  LEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVCRL 159
            L+H+ +  Q+A IFTK LDAN FE LR  LG+C L
Sbjct: 1539 LKHVDTEEQIADIFTKALDANQFEKLRGKLGICLL 1573

[Close]

BLAST of Cmc06g0170621 vs. ExPASy TrEMBL
Match: A0A392MST7 (Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0011298 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.8e-58
Identity = 108/153 (70.59%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 4   ILVGYCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQ 63
           +L+GYC+A+WAGS+DDRKSTSGGCFFLGNNLISW +KKQN V LST +AEYIA GS+C+Q
Sbjct: 307 VLLGYCDADWAGSADDRKSTSGGCFFLGNNLISWFSKKQNSVSLSTAEAEYIAAGSSCSQ 366

Query: 64  LIWMKNMLHEYGFTQDIMTLYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRELIENKIII 123
           L+WMK ML EY   QD+MTLYC  +S+I+I KNPIQH RTKHIDIRHHFIR+L+E+K++ 
Sbjct: 367 LVWMKQMLXEYNVEQDVMTLYCDNLSSINISKNPIQHSRTKHIDIRHHFIRDLVEDKVVT 426

Query: 124 LEHIRSNLQLAYIFTKLLDANTFEHLRAGLGVC 157
           LEHI +  QLA IFTK LDAN FE LR  LG+C
Sbjct: 427 LEHIATEHQLADIFTKTLDANRFEELRGKLGIC 459

[Close]

BLAST of Cmc06g0170621 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-15
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 8   YCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQLIWM 67
           + +A++    D R+ST+G C FLG +LISW +KKQ  V  S+ +AEY A+  A  +++W+
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504

Query: 68  KNMLHEYGFTQDIMT-LYCGIMSAIDILKNPIQHIRTKHIDIRHHFIRE 116
                E        T L+C   +AI I  N + H RTKHI+   H +RE
Sbjct: 505 AQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc06g0170621 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 8   YCNANWAGSSDDRKSTSGGCFFLGNNLISWLNKKQNCVFLSTTKAEYIAVGSACTQLIW 67
           +C+++WAG +  R+ST+G C FLG N+ISW  K+Q  V  S+T+ EY A+     +L W
Sbjct: 167 FCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc06g0170621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055610.1	8.3e-68	81.41	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [...	[more]
AAO73529.1	4.6e-58	69.68	gag-pol polyprotein [Glycine max]	[more]
AAO73521.1	6.0e-58	69.03	gag-pol polyprotein [Glycine max]	[more]
AAO73527.1	6.0e-58	69.03	gag-pol polyprotein [Glycine max]	[more]
AAO73523.1	7.8e-58	69.03	gag-pol polyprotein [Glycine max]	[more]

BLAST of Cmc06g0170621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-28	42.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.1e-25	43.14	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.2e-21	36.08	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.7e-21	35.44	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	6.3e-10	46.03	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc06g0170621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLL1	4.0e-68	81.41	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G...	[more]
Q84VH6	2.2e-58	69.68	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VI4	2.9e-58	69.03	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VH8	2.9e-58	69.03	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
A0A392MST7	3.8e-58	70.59	Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0011298 PE=...	[more]

BLAST of Cmc06g0170621 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.9e-15	38.53	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.1e-09	44.07	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 24..156
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 24..156
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 6..141 e-value: 1.10964E-69 score: 205.01

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0170621.1	Cmc06g0170621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0052923	all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding