Cmc06g0170451 (gene) Melon (Charmono) v1.1

Overview
NameCmc06g0170451
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr06: 25717404 .. 25718175 (+)
RNA-Seq ExpressionCmc06g0170451
SyntenyCmc06g0170451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAATGATGGATCAACAAATGCAGTTGGCATCGAAGATGTATGCTTGAAGGATAGAAATGGTTCTAAGCTGATTTTGAAAAATGTGAAACATATTCCCTACATTCGTATGAACTTGATTTCTACAAGTAAGCTTGATGATGAAGGTTTTTGCAATACCTTCGATAATTGCATATGGAAGCTTACTAAAGGTTCTATGGTTATAGCAAAGGGACATAAATTTTTTTCACTGTACTACATGGATGCTAAAATCATGAACTTTGATATAAATACAATAAATGATGAAGTGAATGTTAAGCTTTGGCATAAGAGGCTTAGCCATATGAGTGAGAAGGGTTTAAAGATTTTAACCCAGGAAAATCATCTTTCTGATTTAAAGAGTGTACCTCTAAAACAATGTCCTCATTGTTTGGTAGAAAAGCAGACAAAGGTTACCTTTAAATCATCTAAGTATTCAAGAAAGCCAGATGTACTAGAGTTGGTACATTCTGATGTGTGTGGTCCTATGAAAACAGTCACTTGTGGGTGCATCGTATTTTGTGACATATAATGATGATCACTCAAGGAAAATATAGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAGCGTTTAAACAGTTTCATGCCTTTGTTGAGAGAGAAACTAGTGAAAAGCTTAACTGCATTAGAACTGATAATGGATGTGAGTATTGTGGACTTTTTGATGATATTGCAGAAATTATGGCATTTGACATCAAAAGACACCTCTTAAGACCCTGTAGTTAA

mRNA sequence

ATGGGCAATGATGGATCAACAAATGCAGTTGGCATCGAAGATGTATGCTTGAAGGATAGAAATGGTTCTAAGCTGATTTTGAAAAATGTGAAACATATTCCCTACATTCGTATGAACTTGATTTCTACAAGTAAGCTTGATGATGAAGGTTTTTGCAATACCTTCGATAATTGCATATGGAAGCTTACTAAAGGTTCTATGGTTATAGCAAAGGGACATAAATTTTTTTCACTGTACTACATGGATGCTAAAATCATGAACTTTGATATAAATACAATAAATGATGAAGTGAATGTTAAGCTTTGGCATAAGAGGCTTAGCCATATGAGTGAGAAGGGTTTAAAGATTTTAACCCAGGAAAATCATCTTTCTGATTTAAAGAGTGTACCTCTAAAACAATGTCCTCATTGTTTGGTAGAAAAGCAGACAAAGGTTACCTTTAAATCATCTAAGTATTCAAGAAAGCCAGATGTACTAGAGTTGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAGCGTTTAAACAGTTTCATGCCTTTGTTGAGAGAGAAACTAGTGAAAAGCTTAACTGCATTAGAACTGATAATGGATGTGAGTATTGTGGACTTTTTGATGATATTGCAGAAATTATGGCATTTGACATCAAAAGACACCTCTTAAGACCCTGTAGTTAA

Coding sequence (CDS)

ATGGGCAATGATGGATCAACAAATGCAGTTGGCATCGAAGATGTATGCTTGAAGGATAGAAATGGTTCTAAGCTGATTTTGAAAAATGTGAAACATATTCCCTACATTCGTATGAACTTGATTTCTACAAGTAAGCTTGATGATGAAGGTTTTTGCAATACCTTCGATAATTGCATATGGAAGCTTACTAAAGGTTCTATGGTTATAGCAAAGGGACATAAATTTTTTTCACTGTACTACATGGATGCTAAAATCATGAACTTTGATATAAATACAATAAATGATGAAGTGAATGTTAAGCTTTGGCATAAGAGGCTTAGCCATATGAGTGAGAAGGGTTTAAAGATTTTAACCCAGGAAAATCATCTTTCTGATTTAAAGAGTGTACCTCTAAAACAATGTCCTCATTGTTTGGTAGAAAAGCAGACAAAGGTTACCTTTAAATCATCTAAGTATTCAAGAAAGCCAGATGTACTAGAGTTGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAGCGTTTAAACAGTTTCATGCCTTTGTTGAGAGAGAAACTAGTGAAAAGCTTAACTGCATTAGAACTGATAATGGATGTGAGTATTGTGGACTTTTTGATGATATTGCAGAAATTATGGCATTTGACATCAAAAGACACCTCTTAAGACCCTGTAGTTAA

Protein sequence

MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIWKLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQENHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLELVYTLKTKDQVLQAFKQFHAFVERETSEKLNCIRTDNGCEYCGLFDDIAEIMAFDIKRHLLRPCS
Homology
BLAST of Cmc06g0170451 vs. NCBI nr
Match: KAA0040427.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-84
Identity = 167/239 (69.87%), Postives = 182/239 (76.15%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDG TN VGI DV LK+RNGS+LILKNVKHIP I MNLIST KLDDEGFCNTFDN IW
Sbjct: 243 MGNDGPTNVVGIGDVHLKNRNGSRLILKNVKHIPDIHMNLISTGKLDDEGFCNTFDNGIW 302

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLTKGSMVIA G KF SLYYMDAKI+++DINT+NDE NV+LWHKRLSHMSEKGLKILT++
Sbjct: 303 KLTKGSMVIASGQKFSSLYYMDAKIIDYDINTVNDEANVELWHKRLSHMSEKGLKILTKK 362

Query: 121 NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLEL------------------- 180
           NHL DLKS PLK+CPHCL  KQT+VTFKSS++SRK +VLEL                   
Sbjct: 363 NHLHDLKSTPLKRCPHCLAGKQTRVTFKSSQHSRKSNVLELVHSNVCGLMKTKSLGGALY 422

Query: 181 -------------VYTLKTKDQVLQAFKQFHAFVERETSEKLNCIRTDNGCEYCGLFDD 208
                        VYTLKTKDQV   FKQFHA VERET EKL CIRTDNG EYCG FD+
Sbjct: 423 FVTFTDDHSRKIWVYTLKTKDQV---FKQFHASVERETGEKLKCIRTDNGGEYCGPFDE 478

BLAST of Cmc06g0170451 vs. NCBI nr
Match: TYJ98688.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-84
Identity = 167/239 (69.87%), Postives = 182/239 (76.15%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDG TN VGI DV LK+RNGS+LILKNVKHIP I MNLIST KLDDEGFCNTFDN IW
Sbjct: 243 MGNDGPTNVVGIGDVHLKNRNGSRLILKNVKHIPDIHMNLISTGKLDDEGFCNTFDNGIW 302

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLTKGSMVIA G KF SLYYMDAKI+++DINT+NDE NV+LWHKRLSHMSEKGLKILT++
Sbjct: 303 KLTKGSMVIASGQKFSSLYYMDAKIIDYDINTVNDEANVELWHKRLSHMSEKGLKILTKK 362

Query: 121 NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLEL------------------- 180
           NHL DLKS PLK+CPHCL  KQT+VTFKSS++SRK +VLEL                   
Sbjct: 363 NHLHDLKSTPLKRCPHCLAGKQTRVTFKSSQHSRKSNVLELVHSNVCGLMKTKSLGGALY 422

Query: 181 -------------VYTLKTKDQVLQAFKQFHAFVERETSEKLNCIRTDNGCEYCGLFDD 208
                        VYTLKTKDQV   FKQFHA VERET EKL CIRTDNG EYCG FD+
Sbjct: 423 FVTFTDDHSRKIWVYTLKTKDQV---FKQFHASVERETGEKLKCIRTDNGGEYCGPFDE 478

BLAST of Cmc06g0170451 vs. NCBI nr
Match: KAA0047570.1 (putative retrotransposon [Cucumis melo var. makuwa] >TYK14964.1 putative retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83
Identity = 169/250 (67.60%), Postives = 186/250 (74.40%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDGS N VGI DV L +RNGS+LILKNVKHI  IRMNLIST KLDDEGFCNTFDN IW
Sbjct: 191 MGNDGSANVVGIGDVHL-NRNGSRLILKNVKHISDIRMNLISTGKLDDEGFCNTFDNGIW 250

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLTKGS+VIA+GHKF SLYYMDAKI++ DINT+NDEVN++LWHKRLSHMSEKGLKILT++
Sbjct: 251 KLTKGSIVIARGHKFSSLYYMDAKIIDSDINTVNDEVNIELWHKRLSHMSEKGLKILTKK 310

Query: 121 -----------NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLEL-------- 180
                      NHL DLKS PLK+CPHCL  KQT+VTFKSS++SRKP+VLEL        
Sbjct: 311 NHLPDLKSTPLNHLPDLKSTPLKRCPHCLAGKQTRVTFKSSQHSRKPNVLELVHSNVCGP 370

Query: 181 ------------------------VYTLKTKDQVLQAFKQFHAFVERETSEKLNCIRTDN 208
                                   VYTLKTKDQVLQ FKQFHA VERET EKL CIRTDN
Sbjct: 371 MKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQVFKQFHASVERETGEKLKCIRTDN 430

BLAST of Cmc06g0170451 vs. NCBI nr
Match: KAA0065636.1 (putative retrotransposon [Cucumis melo var. makuwa] >TYK07205.1 putative retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 290.8 bits (743), Expect = 1.0e-74
Identity = 156/239 (65.27%), Postives = 173/239 (72.38%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDGSTNAVGI  V LK+ NGS+LILKNVKHIP IRMNLISTSKLD+EGFCNTFDN IW
Sbjct: 160 MGNDGSTNAVGIGGVHLKNINGSRLILKNVKHIPDIRMNLISTSKLDNEGFCNTFDNGIW 219

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLT+G MVIAKG K   LYY+DAKI++ DINT+N E NV+LW  RLSHMSEKGLKIL ++
Sbjct: 220 KLTEGFMVIAKGQKISLLYYVDAKIIDSDINTVNGEANVELWQMRLSHMSEKGLKILIKK 279

Query: 121 NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLEL------------------- 180
           NHL DLKS PLK   H L  KQT VTFKSS++SRKP+VLEL                   
Sbjct: 280 NHLPDLKSAPLKWFAHYLAGKQTSVTFKSSQHSRKPNVLELVHFNVCSPMKTKSLWGASY 339

Query: 181 -------------VYTLKTKDQVLQAFKQFHAFVERETSEKLNCIRTDNGCEYCGLFDD 208
                        VYTLKTK QVLQ FKQFHA +ERE  EKLNCIRTDNG +Y G FD+
Sbjct: 340 FVTFTNDHSRKIWVYTLKTKYQVLQVFKQFHASIEREIGEKLNCIRTDNGGKYYGPFDE 398

BLAST of Cmc06g0170451 vs. NCBI nr
Match: RVW22327.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 261.9 bits (668), Expect = 5.0e-66
Identity = 130/210 (61.90%), Postives = 158/210 (75.24%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDGS  A+G+ DV L+  NG+ L LKNVKHIP IRMNLIST KLDDEGFCNTF +  W
Sbjct: 301 MGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQW 360

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLT+GSMVIAKG+K  SLY M A++++  IN ++D+   +LWH RL HMSEKGL IL ++
Sbjct: 361 KLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKK 420

Query: 121 NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLE---LVYTLKTKDQVLQAFKQ 180
           N LS +K   LK+C HCL  KQT+V FK+ +++RKPD       VYTLKTKDQ+L  FKQ
Sbjct: 421 NLLSGMKKGSLKRCAHCLAGKQTRVAFKTLRHTRKPDDHSRKIWVYTLKTKDQMLDVFKQ 480

Query: 181 FHAFVERETSEKLNCIRTDNGCEYCGLFDD 208
           FHA VER++ EKL CIRTDNG EY G FD+
Sbjct: 481 FHALVERQSGEKLKCIRTDNGGEYSGPFDE 510

BLAST of Cmc06g0170451 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.8e-46
Identity = 101/233 (43.35%), Postives = 141/233 (60.52%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGN   +   GI D+C+K   G  L+LK+V+H+P +RMNLIS   LD +G+ + F N  W
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           +LTKGS+VIAKG    +LY  +A+I   ++N   DE++V LWHKR+ HMSEKGL+IL ++
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKK 443

Query: 121 NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLELVYT---------------- 180
           + +S  K   +K C +CL  KQ +V+F++S   RK ++L+LVY+                
Sbjct: 444 SLISYAKGTTVKPCDYCLFGKQHRVSFQTSS-ERKLNILDLVYSDVCGPMEIESMGGNKY 503

Query: 181 ----------------LKTKDQVLQAFKQFHAFVERETSEKLNCIRTDNGCEY 202
                           LKTKDQV Q F++FHA VERET  KL  +R+DNG EY
Sbjct: 504 FVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEY 555

BLAST of Cmc06g0170451 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-09
Identity = 33/100 (33.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query: 59  IWKLTKGSMVIAKGHKFFSLYYMDAKIMNFDIN---TINDEVNVKLWHKRLSHMSEKGLK 118
           + K+ KG   I KG++  SLY +   +   + N   T  DE   +LWH RL+HMS++G++
Sbjct: 28  VLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDE--TRLWHSRLAHMSQRGME 87

Query: 119 ILTQENHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRK 156
           +L ++  L   K   LK C  C+  K  +V F + +++ K
Sbjct: 88  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK 125

BLAST of Cmc06g0170451 vs. ExPASy TrEMBL
Match: A0A5D3BKF7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00180 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.8e-85
Identity = 167/239 (69.87%), Postives = 182/239 (76.15%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDG TN VGI DV LK+RNGS+LILKNVKHIP I MNLIST KLDDEGFCNTFDN IW
Sbjct: 243 MGNDGPTNVVGIGDVHLKNRNGSRLILKNVKHIPDIHMNLISTGKLDDEGFCNTFDNGIW 302

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLTKGSMVIA G KF SLYYMDAKI+++DINT+NDE NV+LWHKRLSHMSEKGLKILT++
Sbjct: 303 KLTKGSMVIASGQKFSSLYYMDAKIIDYDINTVNDEANVELWHKRLSHMSEKGLKILTKK 362

Query: 121 NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLEL------------------- 180
           NHL DLKS PLK+CPHCL  KQT+VTFKSS++SRK +VLEL                   
Sbjct: 363 NHLHDLKSTPLKRCPHCLAGKQTRVTFKSSQHSRKSNVLELVHSNVCGLMKTKSLGGALY 422

Query: 181 -------------VYTLKTKDQVLQAFKQFHAFVERETSEKLNCIRTDNGCEYCGLFDD 208
                        VYTLKTKDQV   FKQFHA VERET EKL CIRTDNG EYCG FD+
Sbjct: 423 FVTFTDDHSRKIWVYTLKTKDQV---FKQFHASVERETGEKLKCIRTDNGGEYCGPFDE 478

BLAST of Cmc06g0170451 vs. ExPASy TrEMBL
Match: A0A5A7TFU1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00580 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.8e-85
Identity = 167/239 (69.87%), Postives = 182/239 (76.15%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDG TN VGI DV LK+RNGS+LILKNVKHIP I MNLIST KLDDEGFCNTFDN IW
Sbjct: 243 MGNDGPTNVVGIGDVHLKNRNGSRLILKNVKHIPDIHMNLISTGKLDDEGFCNTFDNGIW 302

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLTKGSMVIA G KF SLYYMDAKI+++DINT+NDE NV+LWHKRLSHMSEKGLKILT++
Sbjct: 303 KLTKGSMVIASGQKFSSLYYMDAKIIDYDINTVNDEANVELWHKRLSHMSEKGLKILTKK 362

Query: 121 NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLEL------------------- 180
           NHL DLKS PLK+CPHCL  KQT+VTFKSS++SRK +VLEL                   
Sbjct: 363 NHLHDLKSTPLKRCPHCLAGKQTRVTFKSSQHSRKSNVLELVHSNVCGLMKTKSLGGALY 422

Query: 181 -------------VYTLKTKDQVLQAFKQFHAFVERETSEKLNCIRTDNGCEYCGLFDD 208
                        VYTLKTKDQV   FKQFHA VERET EKL CIRTDNG EYCG FD+
Sbjct: 423 FVTFTDDHSRKIWVYTLKTKDQV---FKQFHASVERETGEKLKCIRTDNGGEYCGPFDE 478

BLAST of Cmc06g0170451 vs. ExPASy TrEMBL
Match: A0A5D3CVK2 (Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00140 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.7e-84
Identity = 169/250 (67.60%), Postives = 186/250 (74.40%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDGS N VGI DV L +RNGS+LILKNVKHI  IRMNLIST KLDDEGFCNTFDN IW
Sbjct: 191 MGNDGSANVVGIGDVHL-NRNGSRLILKNVKHISDIRMNLISTGKLDDEGFCNTFDNGIW 250

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLTKGS+VIA+GHKF SLYYMDAKI++ DINT+NDEVN++LWHKRLSHMSEKGLKILT++
Sbjct: 251 KLTKGSIVIARGHKFSSLYYMDAKIIDSDINTVNDEVNIELWHKRLSHMSEKGLKILTKK 310

Query: 121 -----------NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLEL-------- 180
                      NHL DLKS PLK+CPHCL  KQT+VTFKSS++SRKP+VLEL        
Sbjct: 311 NHLPDLKSTPLNHLPDLKSTPLKRCPHCLAGKQTRVTFKSSQHSRKPNVLELVHSNVCGP 370

Query: 181 ------------------------VYTLKTKDQVLQAFKQFHAFVERETSEKLNCIRTDN 208
                                   VYTLKTKDQVLQ FKQFHA VERET EKL CIRTDN
Sbjct: 371 MKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQVFKQFHASVERETGEKLKCIRTDN 430

BLAST of Cmc06g0170451 vs. ExPASy TrEMBL
Match: A0A5D3C706 (Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00910 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.9e-75
Identity = 156/239 (65.27%), Postives = 173/239 (72.38%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDGSTNAVGI  V LK+ NGS+LILKNVKHIP IRMNLISTSKLD+EGFCNTFDN IW
Sbjct: 160 MGNDGSTNAVGIGGVHLKNINGSRLILKNVKHIPDIRMNLISTSKLDNEGFCNTFDNGIW 219

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLT+G MVIAKG K   LYY+DAKI++ DINT+N E NV+LW  RLSHMSEKGLKIL ++
Sbjct: 220 KLTEGFMVIAKGQKISLLYYVDAKIIDSDINTVNGEANVELWQMRLSHMSEKGLKILIKK 279

Query: 121 NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLEL------------------- 180
           NHL DLKS PLK   H L  KQT VTFKSS++SRKP+VLEL                   
Sbjct: 280 NHLPDLKSAPLKWFAHYLAGKQTSVTFKSSQHSRKPNVLELVHFNVCSPMKTKSLWGASY 339

Query: 181 -------------VYTLKTKDQVLQAFKQFHAFVERETSEKLNCIRTDNGCEYCGLFDD 208
                        VYTLKTK QVLQ FKQFHA +ERE  EKLNCIRTDNG +Y G FD+
Sbjct: 340 FVTFTNDHSRKIWVYTLKTKYQVLQVFKQFHASIEREIGEKLNCIRTDNGGKYYGPFDE 398

BLAST of Cmc06g0170451 vs. ExPASy TrEMBL
Match: A0A438CGI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1683 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.4e-66
Identity = 130/210 (61.90%), Postives = 158/210 (75.24%), Query Frame = 0

Query: 1   MGNDGSTNAVGIEDVCLKDRNGSKLILKNVKHIPYIRMNLISTSKLDDEGFCNTFDNCIW 60
           MGNDGS  A+G+ DV L+  NG+ L LKNVKHIP IRMNLIST KLDDEGFCNTF +  W
Sbjct: 301 MGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQW 360

Query: 61  KLTKGSMVIAKGHKFFSLYYMDAKIMNFDINTINDEVNVKLWHKRLSHMSEKGLKILTQE 120
           KLT+GSMVIAKG+K  SLY M A++++  IN ++D+   +LWH RL HMSEKGL IL ++
Sbjct: 361 KLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKK 420

Query: 121 NHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRKPDVLE---LVYTLKTKDQVLQAFKQ 180
           N LS +K   LK+C HCL  KQT+V FK+ +++RKPD       VYTLKTKDQ+L  FKQ
Sbjct: 421 NLLSGMKKGSLKRCAHCLAGKQTRVAFKTLRHTRKPDDHSRKIWVYTLKTKDQMLDVFKQ 480

Query: 181 FHAFVERETSEKLNCIRTDNGCEYCGLFDD 208
           FHA VER++ EKL CIRTDNG EY G FD+
Sbjct: 481 FHALVERQSGEKLKCIRTDNGGEYSGPFDE 510

BLAST of Cmc06g0170451 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-10
Identity = 33/100 (33.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query: 59  IWKLTKGSMVIAKGHKFFSLYYMDAKIMNFDIN---TINDEVNVKLWHKRLSHMSEKGLK 118
           + K+ KG   I KG++  SLY +   +   + N   T  DE   +LWH RL+HMS++G++
Sbjct: 28  VLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDE--TRLWHSRLAHMSQRGME 87

Query: 119 ILTQENHLSDLKSVPLKQCPHCLVEKQTKVTFKSSKYSRK 156
           +L ++  L   K   LK C  C+  K  +V F + +++ K
Sbjct: 88  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0040427.11.8e-8469.87Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYJ98688.11.8e-8469.87Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0047570.11.2e-8367.60putative retrotransposon [Cucumis melo var. makuwa] >TYK14964.1 putative retrotr... [more]
KAA0065636.11.0e-7465.27putative retrotransposon [Cucumis melo var. makuwa] >TYK07205.1 putative retrotr... [more]
RVW22327.15.0e-6661.90Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
P109787.8e-4643.35Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P932933.4e-0933.00Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5D3BKF78.8e-8569.87Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7TFU18.8e-8569.87Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CVK25.7e-8467.60Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3C7064.9e-7565.27Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A438CGI42.4e-6661.90Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
ATMG00300.12.4e-1033.00Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 78..142
e-value: 2.6E-11
score: 43.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc06g0170451.1Cmc06g0170451.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding