Cmc06g0168031 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0168031
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr06: 21562843 .. 21563295 (+)
RNA-Seq Expression	Cmc06g0168031
Synteny	Cmc06g0168031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAGTTGATTAGAATACTCTTATCCATCACCACTCTTTATAATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTAAATGGAAATCTTGAGGAGAGTATCTATATGATCCAACAAGAGGGGTTCATACAAAATGGTCAAGAACAAAAAGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCTTGGAACATAAGGTTTGATACTGCAATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTCTACTGTATCATTCTTAATTCTGTATCTAGATGACATACTACTCATTGGGAATGATGTAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACACAATTCCAAATGAAAGATTTGGGAAATGCTCAATACGTTCTTGGTATCCAAATAGTTTGA

mRNA sequence

ATGCTAAAGTTGATTAGAATACTCTTATCCATCACCACTCTTTATAATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTAAATGGAAATCTTGAGGAGAGTATCTATATGATCCAACAAGAGGGGTTCATACAAAATGGTCAAGAACAAAAAGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCTTGGAACATAAGGTTTGATACTGCAATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTCTACTGTATCATTCTTAATTCTGTATCTAGATGACATACTACTCATTGGGAATGATGTAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACACAATTCCAAATGAAAGATTTGGGAAATGCTCAATACGTTCTTGGTATCCAAATAGTTTGA

Coding sequence (CDS)

ATGCTAAAGTTGATTAGAATACTCTTATCCATCACCACTCTTTATAATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTAAATGGAAATCTTGAGGAGAGTATCTATATGATCCAACAAGAGGGGTTCATACAAAATGGTCAAGAACAAAAAGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCTTGGAACATAAGGTTTGATACTGCAATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTCTACTGTATCATTCTTAATTCTGTATCTAGATGACATACTACTCATTGGGAATGATGTAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACACAATTCCAAATGAAAGATTTGGGAAATGCTCAATACGTTCTTGGTATCCAAATAGTTTGA

Protein sequence

MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIV

Homology

[Close]

BLAST of Cmc06g0168031 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 133/150 (88.67%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
           M+K IRILLSI T Y+YEIWQMDVKTAFLNGNLEESIYM+Q EGFIQ GQEQKVCKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYKRIINSTV+FL+LY+DDILLIGN+V 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
           HLTDIK+WL TQFQMKDLG+AQYVLGIQIV
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIV 373

[Close]

BLAST of Cmc06g0168031 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 267.3 bits (682), Expect = 7.9e-68
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1    MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
            MLK IRILLSI T YNYEIWQMDVKTAFLNGNLEESIYM+Q EGFI   QEQKVCKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
            IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYK+I+NS V+FLILY+DDILLIGNDV 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
            +LTD+KKWL TQFQMKDLG AQY+LGIQIV
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIV 1043

[Close]

BLAST of Cmc06g0168031 vs. NCBI nr
Match: TYK09500.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 127/150 (84.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
           MLK IRILLSI T Y+YEIWQ+DVKTAFLNGNLEESIYM Q EGFI+ GQEQK+CK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKSYGFEQNVD+PCVYK+++NS V+FL+LY+DDILL+GNDVG
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
           +LTDIKKWLATQFQMKD G+AQYVLGIQIV
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIV 150

[Close]

BLAST of Cmc06g0168031 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-66
Identity = 129/150 (86.00%), Postives = 138/150 (92.00%), Query Frame = 0


Query: 1   MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
           M+K IRILLSI T Y+YEIWQMDVKT FLN NLEESIYM+Q E FIQ GQEQK+CKLQKS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
           IYGLKQASRS NIRFDTAIKSYG EQNVDEPCVYKRI+NSTV+FL+LY+DDILLIGNDVG
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
           HL DIKKWLA QFQMKDLGNAQYVLG+QIV
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIV 467

[Close]

BLAST of Cmc06g0168031 vs. NCBI nr
Match: KAA0061927.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 8.2e-65
Identity = 124/150 (82.67%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 1   MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
           MLK IRILLSI T Y+YEIWQMDVKTAFLNGNLE S+YM Q +GFI+NGQEQKVCKLQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
           IY LKQASRSWNI+FDT IK+YGFEQNV+EPCVYK+++NS V+FL+LY+DDILLIGNDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
           +LTDI+KWLATQFQMK LG+AQYVLGIQIV
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIV 150

[Close]

BLAST of Cmc06g0168031 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.0e-33
Identity = 72/147 (48.98%), Postives = 101/147 (68.71%), Query Frame = 0


Query: 5    IRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKSIYGL 64
            IR +LS+    + E+ Q+DVKTAFL+G+LEE IYM Q EGF   G++  VCKL KS+YGL
Sbjct: 904  IRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGL 963

Query: 65   KQASRSWNIRFDTAIKSYGFEQNVDEPCVY-KRIINSTVSFLILYLDDILLIGNDVGHLT 124
            KQA R W ++FD+ +KS  + +   +PCVY KR   +    L+LY+DD+L++G D G + 
Sbjct: 964  KQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIA 1023

Query: 125  DIKKWLATQFQMKDLGNAQYVLGIQIV 151
             +K  L+  F MKDLG AQ +LG++IV
Sbjct: 1024 KLKGDLSKSFDMKDLGPAQQILGMKIV 1050

[Close]

BLAST of Cmc06g0168031 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-24
Identity = 60/147 (40.82%), Postives = 92/147 (62.59%), Query Frame = 0


Query: 6    RILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKSIYGLK 65
            R +LS+   YN ++ QMDVKTAFLNG L+E IYM   +G   N     VCKL K+IYGLK
Sbjct: 985  RFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCN--SDNVCKLNKAIYGLK 1044

Query: 66   QASRSWNIRFDTAIKSYGFEQNVDEPCVY---KRIINSTVSFLILYLDDILLIGNDVGHL 125
            QA+R W   F+ A+K   F  +  + C+Y   K  IN  + +++LY+DD+++   D+  +
Sbjct: 1045 QAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATGDMTRM 1104

Query: 126  TDIKKWLATQFQMKDLGNAQYVLGIQI 150
             + K++L  +F+M DL   ++ +GI+I
Sbjct: 1105 NNFKRYLMEKFRMTDLNEIKHFIGIRI 1128

[Close]

BLAST of Cmc06g0168031 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-21
Identity = 52/144 (36.11%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 5    IRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKSIYGL 64
            IRI+L +    ++ I Q+DV  AFL G L + +YM Q  GFI   +   VCKL+K++YGL
Sbjct: 1047 IRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGL 1106

Query: 65   KQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVGHLTD 124
            KQA R+W +     + + GF  +V +  ++      ++ ++++Y+DDIL+ GND   L +
Sbjct: 1107 KQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHN 1166

Query: 125  IKKWLATQFQMKDLGNAQYVLGIQ 149
                L+ +F +KD     Y LGI+
Sbjct: 1167 TLDNLSQRFSVKDHEELHYFLGIE 1190

[Close]

BLAST of Cmc06g0168031 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-21
Identity = 50/144 (34.72%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 5    IRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKSIYGL 64
            IRI+L +    ++ I Q+DV  AFL G L + +YM Q  GF+   +   VC+L+K+IYGL
Sbjct: 1030 IRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGL 1089

Query: 65   KQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVGHLTD 124
            KQA R+W +   T + + GF  ++ +  ++      ++ ++++Y+DDIL+ GND   L  
Sbjct: 1090 KQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKH 1149

Query: 125  IKKWLATQFQMKDLGNAQYVLGIQ 149
                L+ +F +K+  +  Y LGI+
Sbjct: 1150 TLDALSQRFSVKEHEDLHYFLGIE 1173

[Close]

BLAST of Cmc06g0168031 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 22  MDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKS 81
           MDV TAFLN  ++E IY+ Q  GF+       V +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 82  YGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVGHLTDIKKWLATQFQMKDLGNA 141
            GF ++  E  +Y R  +    ++ +Y+DD+L+          +K+ L   + MKDLG  
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 142 QYVLGIQI 150
              LG+ I
Sbjct: 121 DKFLGLNI 128

[Close]

BLAST of Cmc06g0168031 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 133/150 (88.67%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
           M+K IRILLSI T Y+YEIWQMDVKTAFLNGNLEESIYM+Q EGFIQ GQEQKVCKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYKRIINSTV+FL+LY+DDILLIGN+V 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
           HLTDIK+WL TQFQMKDLG+AQYVLGIQIV
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIV 373

[Close]

BLAST of Cmc06g0168031 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.8e-68
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1    MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
            MLK IRILLSI T YNYEIWQMDVKTAFLNGNLEESIYM+Q EGFI   QEQKVCKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
            IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYK+I+NS V+FLILY+DDILLIGNDV 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
            +LTD+KKWL TQFQMKDLG AQY+LGIQIV
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIV 1043

[Close]

BLAST of Cmc06g0168031 vs. ExPASy TrEMBL
Match: A0A5D3CDT9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G001020 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 127/150 (84.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
           MLK IRILLSI T Y+YEIWQ+DVKTAFLNGNLEESIYM Q EGFI+ GQEQK+CK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKSYGFEQNVD+PCVYK+++NS V+FL+LY+DDILL+GNDVG
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
           +LTDIKKWLATQFQMKD G+AQYVLGIQIV
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIV 150

[Close]

BLAST of Cmc06g0168031 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.2e-67
Identity = 129/150 (86.00%), Postives = 138/150 (92.00%), Query Frame = 0


Query: 1   MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
           M+K IRILLSI T Y+YEIWQMDVKT FLN NLEESIYM+Q E FIQ GQEQK+CKLQKS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
           IYGLKQASRS NIRFDTAIKSYG EQNVDEPCVYKRI+NSTV+FL+LY+DDILLIGNDVG
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
           HL DIKKWLA QFQMKDLGNAQYVLG+QIV
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIV 467

[Close]

BLAST of Cmc06g0168031 vs. ExPASy TrEMBL
Match: A0A5A7V4T1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002110 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.0e-65
Identity = 124/150 (82.67%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 1   MLKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQEQKVCKLQKS 60
           MLK IRILLSI T Y+YEIWQMDVKTAFLNGNLE S+YM Q +GFI+NGQEQKVCKLQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGNDVG 120
           IY LKQASRSWNI+FDT IK+YGFEQNV+EPCVYK+++NS V+FL+LY+DDILLIGNDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 HLTDIKKWLATQFQMKDLGNAQYVLGIQIV 151
           +LTDI+KWLATQFQMK LG+AQYVLGIQIV
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIV 150

[Close]

BLAST of Cmc06g0168031 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-24
Identity = 53/152 (34.87%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 2   LKLIRILLSITTLYNYEIWQMDVKTAFLNGNLEESIYMIQQEGFIQNGQE----QKVCKL 61
           L  ++++L+I+ +YN+ + Q+D+  AFLNG+L+E IYM    G+     +      VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  QKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKRIINSTVSFLILYLDDILLIGN 121
           +KSIYGLKQASR W ++F   +  +GF Q+  +   + +I  +    +++Y+DDI++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 DVGHLTDIKKWLATQFQMKDLGNAQYVLGIQI 150
           +   + ++K  L + F+++DLG  +Y LG++I
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324

[Close]

BLAST of Cmc06g0168031 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 104 FLILYLDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQI 150
           +L+LY+DDILL G+    L  +   L++ F MKDLG   Y LGIQI
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQI 47

The following BLAST results are available for this feature:

BLAST of Cmc06g0168031 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045356.1	3.2e-69	88.67	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	7.9e-68	87.33	gag/pol protein, partial [Bryonia dioica]	[more]
TYK09500.1	2.3e-67	84.67	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	1.5e-66	86.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061927.1	8.2e-65	82.67	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0168031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.0e-33	48.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.3e-24	40.82	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.4e-21	36.11	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.4e-21	34.72	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	1.4e-14	34.38	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc06g0168031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA2	1.6e-69	88.67	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
E2GK51	3.8e-68	87.33	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3CDT9	1.1e-67	84.67	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G0010...	[more]
A0A5D3BX45	7.2e-67	86.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
A0A5A7V4T1	4.0e-65	82.67	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00211...	[more]

BLAST of Cmc06g0168031 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.0e-24	34.87	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.3e-04	50.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..149 e-value: 1.0E-42 score: 146.4
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 5..150
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 15..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0168031.1	Cmc06g0168031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding