Cmc06g0166961 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0166961
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 19752575 .. 19753153 (-)
RNA-Seq Expression	Cmc06g0166961
Synteny	Cmc06g0166961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTCTGTTTGGATTACCTCGTACATCTAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCCAGACGGCACGATTTATACCAGTTAAAGCGACATCTACGTTAGACCAGCTAGCTAGATTATATGTCGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGTTGGTCAGTCCGAGAGGACTATCCAAACTTTAGAGGACATGTTGAGAGCATGCGTCCTTCAACTTAAAGGAAGTTGGGATACCCGCTTGCCACTTATGGAGTTTGCTTATAATAATAGCTATCAGTCTAGTATCGGTATGGCACCATATGAGGCCTTATACGGAAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTCGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAGAAAATCTGAGGATAGCCCAAGATCGGTAG

mRNA sequence

ATGGATTTTCTGTTTGGATTACCTCGTACATCTAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCCAGACGGCACGATTTATACCAGTTAAAGCGACATCTACGTTAGACCAGCTAGCTAGATTATATGTCGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGTTGGTCAGTCCGAGAGGACTATCCAAACTTTAGAGGACATGTTGAGAGCATGCGTCCTTCAACTTAAAGGAAGTTGGGATACCCGCTTGCCACTTATGGAGTTTGCTTATAATAATAGCTATCAGTCTAGTATCGGTATGGCACCATATGAGGCCTTATACGGAAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTCGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAGAAAATCTGAGGATAGCCCAAGATCGGTAG

Coding sequence (CDS)

ATGGATTTTCTGTTTGGATTACCTCGTACATCTAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCCAGACGGCACGATTTATACCAGTTAAAGCGACATCTACGTTAGACCAGCTAGCTAGATTATATGTCGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGTTGGTCAGTCCGAGAGGACTATCCAAACTTTAGAGGACATGTTGAGAGCATGCGTCCTTCAACTTAAAGGAAGTTGGGATACCCGCTTGCCACTTATGGAGTTTGCTTATAATAATAGCTATCAGTCTAGTATCGGTATGGCACCATATGAGGCCTTATACGGAAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTCGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAGAAAATCTGAGGATAGCCCAAGATCGGTAG

Protein sequence

MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSWDTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIKLIRENLRIAQDR

Homology

[Close]

BLAST of Cmc06g0166961 vs. NCBI nr
Match: KAA0048607.1 (hypothetical protein E6C27_scaffold61G002600 [Cucumis melo var. makuwa] >TYK27191.1 hypothetical protein E5676_scaffold236G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 379.8 bits (974), Expect = 1.4e-101
Identity = 186/192 (96.88%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
           MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 785 MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 844

Query: 61  VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
           VSDRDPRFT KFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 845 VSDRDPRFTFKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 904

Query: 121 DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
           DT LPLMEFAYNNSYQSSIGMAP EALY RPC TPVCWNEVGERKLVGPESVQI TNNIK
Sbjct: 905 DTHLPLMEFAYNNSYQSSIGMAPCEALYRRPCGTPVCWNEVGERKLVGPESVQIMTNNIK 964

Query: 181 LIRENLRIAQDR 193
           LIRENLRIAQDR
Sbjct: 965 LIRENLRIAQDR 976

[Close]

BLAST of Cmc06g0166961 vs. NCBI nr
Match: TYK05214.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 379.4 bits (973), Expect = 1.8e-101
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
           MDFLFGLPRTSSGHDGIWVIVDRLT+T RFIP+K TSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 668 MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSI 727

Query: 61  VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
           VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT GQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 728 VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSW 787

Query: 121 DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
           DT LPLMEFAYNN+YQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPE VQITTNNIK
Sbjct: 788 DTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIK 847

Query: 181 LIRENLRIAQDR 193
           LIRENLR AQDR
Sbjct: 848 LIRENLRKAQDR 859

[Close]

BLAST of Cmc06g0166961 vs. NCBI nr
Match: KAA0053246.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 379.4 bits (973), Expect = 1.8e-101
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
           MDFLFGLPRTSSGHDGIWVIVDRLT+T RFIP+K TSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 273 MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSI 332

Query: 61  VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
           VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT GQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 333 VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSW 392

Query: 121 DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
           DT LPLMEFAYNN+YQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPE VQITTNNIK
Sbjct: 393 DTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIK 452

Query: 181 LIRENLRIAQDR 193
           LIRENLR AQDR
Sbjct: 453 LIRENLRKAQDR 464

[Close]

BLAST of Cmc06g0166961 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 379.4 bits (973), Expect = 1.8e-101
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
           MDFLFGLPRTSSGHDGIWVIVDRLT+T RFIP+K TSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 795 MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSI 854

Query: 61  VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
           VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT GQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 855 VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSW 914

Query: 121 DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
           DT LPLMEFAYNN+YQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPE VQITTNNIK
Sbjct: 915 DTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIK 974

Query: 181 LIRENLRIAQDR 193
           LIRENLR AQDR
Sbjct: 975 LIRENLRKAQDR 986

[Close]

BLAST of Cmc06g0166961 vs. NCBI nr
Match: KAA0059912.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 379.4 bits (973), Expect = 1.8e-101
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
           MDFLFGLPRTSSGHDGIWVIVDRLT+T RFIP+K TSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 463 MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSI 522

Query: 61  VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
           VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT GQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 523 VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSW 582

Query: 121 DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
           DT LPLMEFAYNN+YQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPE VQITTNNIK
Sbjct: 583 DTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIK 642

Query: 181 LIRENLRIAQDR 193
           LIRENLR AQDR
Sbjct: 643 LIRENLRKAQDR 654

[Close]

BLAST of Cmc06g0166961 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-25
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 1    MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
            MDF+ GLP TS+  + I V+VDR ++ A FI  + T    QL  L    I S +G P +I
Sbjct: 1200 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1259

Query: 61   VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
             SDRD R T+  +  L K +G     S++ HPQT GQSERTIQTL  +LRA V     +W
Sbjct: 1260 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNW 1319

Query: 121  DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTP 156
               LP +EF YN++   ++G +P+E   G    TP
Sbjct: 1320 HVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP 1354

[Close]

BLAST of Cmc06g0166961 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 115.5 bits (288), Expect = 6.5e-25
Identity = 65/155 (41.94%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 1    MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
            MDF+ GLP TS+  + I V+VDR ++ A FI  + T    QL  L    I S +G P +I
Sbjct: 1174 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1233

Query: 61   VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
             SDRD R T+  +  L K +G     S++ HPQT GQSERTIQTL  +LRA       +W
Sbjct: 1234 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNW 1293

Query: 121  DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTP 156
               LP +EF YN++   ++G +P+E   G    TP
Sbjct: 1294 HVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP 1328

[Close]

BLAST of Cmc06g0166961 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.2e-24
Identity = 62/194 (31.96%), Postives = 104/194 (53.61%), Query Frame = 0


Query: 1    MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
            MDF+  LP  SSG++ ++V+VDR ++ A  +P   + T +Q AR++  ++++ +G P  I
Sbjct: 989  MDFITALPE-SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
            ++D D  FTS+ W          +KFS  + PQT GQ+ERT QT+E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DTRLPLMEFAYNNSYQSSIGMAPYEALYG-----RPCRTPVCWNEVGERKLVGPESVQI- 180
               + L++ +YNN+  S+  M P+E ++       P   P   ++  E      E++Q+ 
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVF 1168

Query: 181  -------TTNNIKL 182
                    TNNIK+
Sbjct: 1169 QTVKEHLNTNNIKM 1178

[Close]

BLAST of Cmc06g0166961 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.2e-24
Identity = 62/194 (31.96%), Postives = 104/194 (53.61%), Query Frame = 0


Query: 1    MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
            MDF+  LP  SSG++ ++V+VDR ++ A  +P   + T +Q AR++  ++++ +G P  I
Sbjct: 989  MDFITALPE-SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
            ++D D  FTS+ W          +KFS  + PQT GQ+ERT QT+E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DTRLPLMEFAYNNSYQSSIGMAPYEALYG-----RPCRTPVCWNEVGERKLVGPESVQI- 180
               + L++ +YNN+  S+  M P+E ++       P   P   ++  E      E++Q+ 
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVF 1168

Query: 181  -------TTNNIKL 182
                    TNNIK+
Sbjct: 1169 QTVKEHLNTNNIKM 1178

[Close]

BLAST of Cmc06g0166961 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.2e-24
Identity = 62/194 (31.96%), Postives = 104/194 (53.61%), Query Frame = 0


Query: 1    MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
            MDF+  LP  SSG++ ++V+VDR ++ A  +P   + T +Q AR++  ++++ +G P  I
Sbjct: 989  MDFITALPE-SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
            ++D D  FTS+ W          +KFS  + PQT GQ+ERT QT+E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DTRLPLMEFAYNNSYQSSIGMAPYEALYG-----RPCRTPVCWNEVGERKLVGPESVQI- 180
               + L++ +YNN+  S+  M P+E ++       P   P   ++  E      E++Q+ 
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVF 1168

Query: 181  -------TTNNIKL 182
                    TNNIK+
Sbjct: 1169 QTVKEHLNTNNIKM 1178

[Close]

BLAST of Cmc06g0166961 vs. ExPASy TrEMBL
Match: A0A5D3DU25 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00510 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 6.8e-102
Identity = 186/192 (96.88%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
           MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 785 MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 844

Query: 61  VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
           VSDRDPRFT KFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 845 VSDRDPRFTFKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 904

Query: 121 DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
           DT LPLMEFAYNNSYQSSIGMAP EALY RPC TPVCWNEVGERKLVGPESVQI TNNIK
Sbjct: 905 DTHLPLMEFAYNNSYQSSIGMAPCEALYRRPCGTPVCWNEVGERKLVGPESVQIMTNNIK 964

Query: 181 LIRENLRIAQDR 193
           LIRENLRIAQDR
Sbjct: 965 LIRENLRIAQDR 976

[Close]

BLAST of Cmc06g0166961 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 8.8e-102
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1    MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
            MDFLFGLPRTSSGHDGIWVIVDRLT+T RFIP+K TSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 1203 MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSI 1262

Query: 61   VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
            VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT GQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 1263 VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSW 1322

Query: 121  DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
            DT LPLMEFAYNN+YQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPE VQITTNNIK
Sbjct: 1323 DTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIK 1382

Query: 181  LIRENLRIAQDR 193
            LIRENLR AQDR
Sbjct: 1383 LIRENLRKAQDR 1394

[Close]

BLAST of Cmc06g0166961 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 8.8e-102
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1    MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
            MDFLFGLPRTSSGHDGIWVIVDRLT+T RFIP+K TSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 1241 MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSI 1300

Query: 61   VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
            VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT GQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 1301 VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSW 1360

Query: 121  DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
            DT LPLMEFAYNN+YQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPE VQITTNNIK
Sbjct: 1361 DTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIK 1420

Query: 181  LIRENLRIAQDR 193
            LIRENLR AQDR
Sbjct: 1421 LIRENLRKAQDR 1432

[Close]

BLAST of Cmc06g0166961 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 8.8e-102
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1    MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
            MDFLFGLPRTSSGHDGIWVIVDRLT+T RFIP+K TSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 1241 MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSI 1300

Query: 61   VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
            VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT GQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 1301 VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSW 1360

Query: 121  DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
            DT LPLMEFAYNN+YQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPE VQITTNNIK
Sbjct: 1361 DTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIK 1420

Query: 181  LIRENLRIAQDR 193
            LIRENLR AQDR
Sbjct: 1421 LIRENLRKAQDR 1432

[Close]

BLAST of Cmc06g0166961 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 8.8e-102
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1    MDFLFGLPRTSSGHDGIWVIVDRLTQTARFIPVKATSTLDQLARLYVDKIVSQYGVPVSI 60
            MDFLFGLPRTSSGHDGIWVIVDRLT+T RFIP+K TSTLDQLARLYVDKIVSQYGVPVSI
Sbjct: 1241 MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSI 1300

Query: 61   VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTVGQSERTIQTLEDMLRACVLQLKGSW 120
            VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT GQSERTIQTLEDMLRACVLQLKGSW
Sbjct: 1301 VSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSW 1360

Query: 121  DTRLPLMEFAYNNSYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPESVQITTNNIK 180
            DT LPLMEFAYNN+YQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPE VQITTNNIK
Sbjct: 1361 DTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIK 1420

Query: 181  LIRENLRIAQDR 193
            LIRENLR AQDR
Sbjct: 1421 LIRENLRKAQDR 1432

The following BLAST results are available for this feature:

BLAST of Cmc06g0166961 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048607.1	1.4e-101	96.88	hypothetical protein E6C27_scaffold61G002600 [Cucumis melo var. makuwa] >TYK2719...	[more]
TYK05214.1	1.8e-101	95.31	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0053246.1	1.8e-101	95.31	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050493.1	1.8e-101	95.31	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0059912.1	1.8e-101	95.31	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0166961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	2.2e-25	42.58	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	6.5e-25	41.94	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	4.2e-24	31.96	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.2e-24	31.96	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.2e-24	31.96	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0166961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DU25	6.8e-102	96.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U2V7	8.8e-102	95.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	8.8e-102	95.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	8.8e-102	95.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	8.8e-102	95.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]

BLAST of Cmc06g0166961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..186 e-value: 1.6E-43 score: 150.3
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..144
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 18.437578
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0166961.1	Cmc06g0166961.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding