Cmc06g0166851 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0166851
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr06: 19612016 .. 19612510 (-)
RNA-Seq Expression	Cmc06g0166851
Synteny	Cmc06g0166851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATTTAGGACAGGCACAATATGTTCTTGGGATCCAAATCATAGAGGATCGTAAGAACAAAACGCCAGCACTGTCTCAAGCAACCTATATCGACAAAATGTTAGTTCGATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGACATGGGGTTCACTTTTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAGCTGTGGGCAGCTTAATGTATGCTATGCTTTGCACTAGGCCAGACATTTATTATATAGTGGGAATAGTCAGTAGGTATTTGTCCAACCTAGGGTTAGACCACTGGACGACAGTTAAAATTATTCTCAAGTATCTTAAGAGAATGAGAGACTACATGCTTGTGTGTGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAATCGATAAGGATTCTAGAAAATCTACGTTGGGATTAGTACTCTAA

mRNA sequence

ATGAAAGATTTAGGACAGGCACAATATGTTCTTGGGATCCAAATCATAGAGGATCGTAAGAACAAAACGCCAGCACTGTCTCAAGCAACCTATATCGACAAAATGTTAGTTCGATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGACATGGGGTTCACTTTTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAGCTGTGGGCAGCTTAATGTATGCTATGCTTTGCACTAGGCCAGACATTTATTATATAGTGGGAATAGTCAGTAGGTATTTGTCCAACCTAGGGTTAGACCACTGGACGACAGTTAAAATTATTCTCAAGTATCTTAAGAGAATGAGAGACTACATGCTTGTGTGTGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAATCGATAAGGATTCTAGAAAATCTACGTTGGGATTAGTACTCTAA

Coding sequence (CDS)

ATGAAAGATTTAGGACAGGCACAATATGTTCTTGGGATCCAAATCATAGAGGATCGTAAGAACAAAACGCCAGCACTGTCTCAAGCAACCTATATCGACAAAATGTTAGTTCGATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTCAGACATGGGGTTCACTTTTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGTATTCCCTATGCCTCAGCTGTGGGCAGCTTAATGTATGCTATGCTTTGCACTAGGCCAGACATTTATTATATAGTGGGAATAGTCAGTAGGTATTTGTCCAACCTAGGGTTAGACCACTGGACGACAGTTAAAATTATTCTCAAGTATCTTAAGAGAATGAGAGACTACATGCTTGTGTGTGGAGCTAAGGATTTGATCCTTACAGGATACACTGACTCTGATTTCCAAATCGATAAGGATTCTAGAAAATCTACGTTGGGATTAGTACTCTAA

Protein sequence

MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKEQCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKIILKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLVL

Homology

[Close]

BLAST of Cmc06g0166851 vs. NCBI nr
Match: KAA0062886.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 296.2 bits (757), Expect = 1.7e-76
Identity = 146/163 (89.57%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
           MKDLG+AQYVLGIQII DRKNKT ALSQATYIDKMLVRY MQNSKKGLLPFRHGVH SKE
Sbjct: 729 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYLMQNSKKGLLPFRHGVHLSKE 788

Query: 61  QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
           QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDI Y+VGIVSRY SN GLDHWTT+KII
Sbjct: 789 QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTTIKII 848

Query: 121 LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
           LKYL+R RDYML+ GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 849 LKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 891

[Close]

BLAST of Cmc06g0166851 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75
Identity = 147/163 (90.18%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 1   MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
           MKDLG+AQYVLGIQII DRKNKT ALSQATYIDK+LVRYSMQNSKKGLLPFRHGVH SKE
Sbjct: 97  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 156

Query: 61  QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
           Q PKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDI Y VGIVSRY SN GLDHWTTVKII
Sbjct: 157 QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKII 216

Query: 121 LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
           LKYL+R RDYMLV GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 217 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 259

[Close]

BLAST of Cmc06g0166851 vs. NCBI nr
Match: TYK16417.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.5e-75
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1   MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
           MKDLG+AQYVLGIQII DRKNKT ALSQATYIDKMLVRYSMQNSKKGLLPFRHGVH SKE
Sbjct: 186 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 245

Query: 61  QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
           QCPKTPQEVEDMRRIPYASAVGSLMY MLCTRPDI Y+V IVSRY SN GLDHWT VK+I
Sbjct: 246 QCPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDISYVVEIVSRYQSNPGLDHWTVVKMI 305

Query: 121 LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
           LKYL+R RDYMLV GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 306 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 348

[Close]

BLAST of Cmc06g0166851 vs. NCBI nr
Match: KAA0062926.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.5e-75
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1   MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
           MKDLG+AQYVLGIQII DRKNKT ALSQATYIDKMLVRYSMQNSKKGLLPFRHGVH SKE
Sbjct: 186 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 245

Query: 61  QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
           QCPKTPQEVEDMRRIPYASAVGSLMY MLCTRPDI Y+V IVSRY SN GLDHWT VK+I
Sbjct: 246 QCPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDISYVVEIVSRYQSNPGLDHWTVVKMI 305

Query: 121 LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
           LKYL+R RDYMLV GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 306 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 348

[Close]

BLAST of Cmc06g0166851 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 5.6e-75
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1    MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
            MKDLG+AQYVLGIQII DRKNKT ALSQATYIDK+LVRYSMQNSKKGLLPFRHGVH SKE
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
            Q PKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDI Y VGIVSRY SN GLDHWT VKI+
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 1055

Query: 121  LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
            LKYL+R RDYMLV GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 1098

[Close]

BLAST of Cmc06g0166851 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-38
Identity = 79/161 (49.07%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 1    MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
            MKDLG AQ +LG++I+ +R ++   LSQ  YI+++L R++M+N+K    P    +  SK+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
             CP T +E  +M ++PY+SAVGSLMYAM+CTRPDI + VG+VSR+L N G +HW  VK I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLG 162
            L+YL+      L  G  D IL GYTD+D   D D+RKS+ G
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTG 1195

[Close]

BLAST of Cmc06g0166851 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 8.0e-16
Identity = 58/168 (34.52%), Postives = 88/168 (52.38%), Query Frame = 0


Query: 1    MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHF--- 60
            M DL + ++ +GI+ IE +++K   LSQ+ Y+ K+L +++M+N      P    +++   
Sbjct: 1114 MTDLNEIKHFIGIR-IEMQEDKI-YLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL 1173

Query: 61   -SKEQCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTT 120
             S E C             P  S +G LMY MLCTRPD+   V I+SRY S    + W  
Sbjct: 1174 NSDEDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1233

Query: 121  VKIILKYLKRMRDYMLVCG---AKDLILTGYTDSDFQIDKDSRKSTLG 162
            +K +L+YLK   D  L+     A +  + GY DSD+   +  RKST G
Sbjct: 1234 LKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTG 1268

[Close]

BLAST of Cmc06g0166851 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 38/91 (41.76%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 72  MRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKIILKYLKRMRDYM 131
           M+ +PY SAVG++MY M+ TRPD+   VG++S++ S+    HW  +K +L+YL+  + Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 132 L-VCGAKDLILTGYTDSDFQIDKDSRKSTLG 162
           L    A    L GY+D+D+  D +SR+ST G
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSG 91

[Close]

BLAST of Cmc06g0166851 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 50/165 (30.30%), Postives = 74/165 (44.85%), Query Frame = 0


Query: 1    MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
            +K+     Y LGI+    R  +   LSQ  Y   +L R +M  +K    P       +  
Sbjct: 1160 VKEHEDLHYFLGIE--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLH 1219

Query: 61   QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
               K P   E      Y   VGSL Y +  TRPD+ Y V  +S+Y+     DHW  +K +
Sbjct: 1220 SGTKLPDPTE------YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRV 1279

Query: 121  LKYLKRMRDY-MLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLVL 165
            L+YL    D+ + +     L L  Y+D+D+  D D   ST G ++
Sbjct: 1280 LRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315

[Close]

BLAST of Cmc06g0166851 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-07
Identity = 51/165 (30.91%), Postives = 74/165 (44.85%), Query Frame = 0


Query: 1    MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
            +KD  +  Y LGI+    R      LSQ  YI  +L R +M  +K    P       S  
Sbjct: 1177 VKDHEELHYFLGIE--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLY 1236

Query: 61   QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
               K     E      Y   VGSL Y +  TRPDI Y V  +S+++     +H   +K I
Sbjct: 1237 SGTKLTDPTE------YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRI 1296

Query: 121  LKYLKRMRDY-MLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLVL 165
            L+YL    ++ + +     L L  Y+D+D+  DKD   ST G ++
Sbjct: 1297 LRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

[Close]

BLAST of Cmc06g0166851 vs. ExPASy TrEMBL
Match: A0A5A7V8W0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4427G00180 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.4e-77
Identity = 146/163 (89.57%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
           MKDLG+AQYVLGIQII DRKNKT ALSQATYIDKMLVRY MQNSKKGLLPFRHGVH SKE
Sbjct: 729 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYLMQNSKKGLLPFRHGVHLSKE 788

Query: 61  QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
           QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDI Y+VGIVSRY SN GLDHWTT+KII
Sbjct: 789 QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLDHWTTIKII 848

Query: 121 LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
           LKYL+R RDYML+ GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 849 LKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 891

[Close]

BLAST of Cmc06g0166851 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.5e-76
Identity = 147/163 (90.18%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 1   MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
           MKDLG+AQYVLGIQII DRKNKT ALSQATYIDK+LVRYSMQNSKKGLLPFRHGVH SKE
Sbjct: 97  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 156

Query: 61  QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
           Q PKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDI Y VGIVSRY SN GLDHWTTVKII
Sbjct: 157 QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKII 216

Query: 121 LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
           LKYL+R RDYMLV GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 217 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 259

[Close]

BLAST of Cmc06g0166851 vs. ExPASy TrEMBL
Match: A0A5D3CWZ1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002130 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1   MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
           MKDLG+AQYVLGIQII DRKNKT ALSQATYIDKMLVRYSMQNSKKGLLPFRHGVH SKE
Sbjct: 186 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 245

Query: 61  QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
           QCPKTPQEVEDMRRIPYASAVGSLMY MLCTRPDI Y+V IVSRY SN GLDHWT VK+I
Sbjct: 246 QCPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDISYVVEIVSRYQSNPGLDHWTVVKMI 305

Query: 121 LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
           LKYL+R RDYMLV GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 306 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 348

[Close]

BLAST of Cmc06g0166851 vs. ExPASy TrEMBL
Match: A0A5A7V901 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00180 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1   MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
           MKDLG+AQYVLGIQII DRKNKT ALSQATYIDKMLVRYSMQNSKKGLLPFRHGVH SKE
Sbjct: 186 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 245

Query: 61  QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
           QCPKTPQEVEDMRRIPYASAVGSLMY MLCTRPDI Y+V IVSRY SN GLDHWT VK+I
Sbjct: 246 QCPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDISYVVEIVSRYQSNPGLDHWTVVKMI 305

Query: 121 LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
           LKYL+R RDYMLV GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 306 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 348

[Close]

BLAST of Cmc06g0166851 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.7e-75
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1    MKDLGQAQYVLGIQIIEDRKNKTPALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHFSKE 60
            MKDLG+AQYVLGIQII DRKNKT ALSQATYIDK+LVRYSMQNSKKGLLPFRHGVH SKE
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDIYYIVGIVSRYLSNLGLDHWTTVKII 120
            Q PKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDI Y VGIVSRY SN GLDHWT VKI+
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 1055

Query: 121  LKYLKRMRDYMLVCGAKDLILTGYTDSDFQIDKDSRKSTLGLV 164
            LKYL+R RDYMLV GAKDLILTGYTDSDFQ DKDSRKST G V
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSV 1098

The following BLAST results are available for this feature:

BLAST of Cmc06g0166851 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062886.1	1.7e-76	89.57	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061170.1	1.1e-75	90.18	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK16417.1	2.5e-75	88.96	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062926.1	2.5e-75	88.96	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	5.6e-75	88.96	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]

BLAST of Cmc06g0166851 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.0e-38	49.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.0e-16	34.52	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	1.1e-12	41.76	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	1.5e-09	30.30	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.0e-07	30.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc06g0166851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8W0	8.4e-77	89.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4427G001...	[more]
A0A5A7V1F5	5.5e-76	90.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
A0A5D3CWZ1	1.2e-75	88.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00213...	[more]
A0A5A7V901	1.2e-75	88.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0018...	[more]
A0A5A7TZD0	2.7e-75	88.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]

BLAST of Cmc06g0166851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0166851.1	Cmc06g0166851.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding