Cmc06g0166671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0166671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 19244526 .. 19245023 (+)
RNA-Seq Expression	Cmc06g0166671
Synteny	Cmc06g0166671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAACATAGAAGATCTAAAAGATCTAACAGAAGCATTATCTTCAGTAGATGCAAATTTATGGCAAGAAGCTATCAATGATGAAATTGACTCTCTTGAATCTAATAGAACTTGGCACATAGTTAACTTACCCCCTGGATGTAAAGTTATAGGCTGCAAATGGGTTTTAAGGAAGAAACTCAAACCTAATGGATCAGTAGATAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAGGGAAAACATTGACTTATTTGATACTTTTTCCTCGGTCACTAGAATCACCTCTATTAGAGTGTTGATATCTATAGCTGTCCTGAACAATCTCTTAATCCATCAGATGGATGTTAAAACTGCTTTCCTAAATGGTGGTTTAGAAGAAGAGATTTACATGGAACAACCTAAAGGTTTCATAGTTCAGGACCAAGAATCTAAAGTTTGCAAACTAGATAAATTCCTCTATGGTCTAAAACAAGCTCCCAAGCAATAG

mRNA sequence

ATGTACAACATAGAAGATCTAAAAGATCTAACAGAAGCATTATCTTCAGTAGATGCAAATTTATGGCAAGAAGCTATCAATGATGAAATTGACTCTCTTGAATCTAATAGAACTTGGCACATAGTTAACTTACCCCCTGGATGTAAAGTTATAGGCTGCAAATGGGTTTTAAGGAAGAAACTCAAACCTAATGGATCAGTAGATAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAGGGAAAACATTGACTTATTTGATACTTTTTCCTCGGTCACTAGAATCACCTCTATTAGAGTGTTGATATCTATAGCTGTCCTGAACAATCTCTTAATCCATCAGATGGATGTTAAAACTGCTTTCCTAAATGGTGGTTTAGAAGAAGAGATTTACATGGAACAACCTAAAGGTTTCATAGTTCAGGACCAAGAATCTAAAGTTTGCAAACTAGATAAATTCCTCTATGGTCTAAAACAAGCTCCCAAGCAATAG

Coding sequence (CDS)

ATGTACAACATAGAAGATCTAAAAGATCTAACAGAAGCATTATCTTCAGTAGATGCAAATTTATGGCAAGAAGCTATCAATGATGAAATTGACTCTCTTGAATCTAATAGAACTTGGCACATAGTTAACTTACCCCCTGGATGTAAAGTTATAGGCTGCAAATGGGTTTTAAGGAAGAAACTCAAACCTAATGGATCAGTAGATAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAGGGAAAACATTGACTTATTTGATACTTTTTCCTCGGTCACTAGAATCACCTCTATTAGAGTGTTGATATCTATAGCTGTCCTGAACAATCTCTTAATCCATCAGATGGATGTTAAAACTGCTTTCCTAAATGGTGGTTTAGAAGAAGAGATTTACATGGAACAACCTAAAGGTTTCATAGTTCAGGACCAAGAATCTAAAGTTTGCAAACTAGATAAATTCCTCTATGGTCTAAAACAAGCTCCCAAGCAATAG

Protein sequence

MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKKLKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVKTAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ

Homology

[Close]

BLAST of Cmc06g0166671 vs. NCBI nr
Match: TYK22685.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 297.4 bits (760), Expect = 7.8e-77
Identity = 146/165 (88.48%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           MYNIED KDLTEALSSVD NLWQ+AINDE+DSLESNRTWH+V+LPP CK IGCKWVLRKK
Sbjct: 1   MYNIEDQKDLTEALSSVDVNLWQKAINDEMDSLESNRTWHLVDLPPPCKAIGCKWVLRKK 60

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
            KP+GS+DKYKARLVAKGFRQREN+D FDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK
Sbjct: 61  FKPDGSIDKYKARLVAKGFRQRENMDFFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120

Query: 121 TAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           T FLNG LEEEIYMEQP+GFIVQ QESKVCKLDK LYGLKQAPK+
Sbjct: 121 TTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKE 165

[Close]

BLAST of Cmc06g0166671 vs. NCBI nr
Match: KAA0036533.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 142/165 (86.06%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           MYNIED KDLT+ALSSVD NLWQ+AINDE+DSLESNRTWH+V+LPP CK IGCKWVLRKK
Sbjct: 1   MYNIEDQKDLTKALSSVDVNLWQKAINDEMDSLESNRTWHLVDLPPPCKAIGCKWVLRKK 60

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
            KP+GS+DKYKARLVAKGFRQ EN+D FDTFSSVTRITSIRVLISI +LNNLLIHQMDVK
Sbjct: 61  FKPDGSIDKYKARLVAKGFRQTENMDFFDTFSSVTRITSIRVLISIVILNNLLIHQMDVK 120

Query: 121 TAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           T FLNG LEEEIYMEQP+GFIVQ QESKVCKLDK LYGLKQAPK+
Sbjct: 121 TTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKE 165

[Close]

BLAST of Cmc06g0166671 vs. NCBI nr
Match: KAA0046026.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 2.1e-74
Identity = 145/165 (87.88%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           +YN+ED KDLTEALSSVDANLWQEAINDE+DSLESNRTWH+V+LPPGCK IGCKWVLRKK
Sbjct: 271 VYNVEDSKDLTEALSSVDANLWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCKWVLRKK 330

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
           LKP+GSVDKYKARLVAKGFRQRENID FDTFS VTRITSIRVLISI  LNNLLIHQMDVK
Sbjct: 331 LKPDGSVDKYKARLVAKGFRQRENIDFFDTFSPVTRITSIRVLISIDALNNLLIHQMDVK 390

Query: 121 TAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           TAFLN  LEEEIYMEQ +GFIV  QESKVCKLDK LYGLKQA KQ
Sbjct: 391 TAFLNCDLEEEIYMEQFEGFIVHGQESKVCKLDKSLYGLKQASKQ 435

[Close]

BLAST of Cmc06g0166671 vs. NCBI nr
Match: KAA0059671.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK26110.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 142/165 (86.06%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           MY++ED KDLTEALSSVDANLWQEA NDEIDSLESN+TWH+++LP GCK IGCK VL+KK
Sbjct: 1   MYSVEDPKDLTEALSSVDANLWQEATNDEIDSLESNKTWHLLDLPSGCKAIGCKRVLKKK 60

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
           LKP+ SVDKYKARLVAKGFRQRENID FDTFS VTRIT IRVLISIA LNNLLIHQMDVK
Sbjct: 61  LKPDRSVDKYKARLVAKGFRQRENIDFFDTFSPVTRITFIRVLISIAALNNLLIHQMDVK 120

Query: 121 TAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           TAFLNG LEEEIYM+QPKGFIV  QESKVCKLDK LYGLKQAPKQ
Sbjct: 121 TAFLNGDLEEEIYMKQPKGFIVHGQESKVCKLDKSLYGLKQAPKQ 165

[Close]

BLAST of Cmc06g0166671 vs. NCBI nr
Match: KAA0048556.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK28358.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK
Sbjct: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
           LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK
Sbjct: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120

Query: 121 TAFLNGGLEEEIYMEQPK 139
           TAFLNGGLEEEIYMEQPK
Sbjct: 121 TAFLNGGLEEEIYMEQPK 138

[Close]

BLAST of Cmc06g0166671 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.3e-37
Identity = 78/158 (49.37%), Postives = 111/158 (70.25%), Query Frame = 0


Query: 8   KDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKKLKPNGSV 67
           + L E LS  + N   +A+ +E++SL+ N T+ +V LP G + + CKWV + K   +  +
Sbjct: 812 ESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKL 871

Query: 68  DKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVKTAFLNGG 127
            +YKARLV KGF Q++ ID  + FS V ++TSIR ++S+A   +L + Q+DVKTAFL+G 
Sbjct: 872 VRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGD 931

Query: 128 LEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           LEEEIYMEQP+GF V  ++  VCKL+K LYGLKQAP+Q
Sbjct: 932 LEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQ 969

[Close]

BLAST of Cmc06g0166671 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-34
Identity = 70/153 (45.75%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 13   ALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPG-CKVIGCKWVLRKKLKPNGSVDKYK 72
            A+ ++    W+ A+  EI++   N TW +V  PP    ++GC+W+  KK   +GS+++YK
Sbjct: 959  AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYK 1018

Query: 73   ARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVKTAFLNGGLEEE 132
            ARLVAKG+ QR  +D  +TFS V + TSIR+++ +AV  +  I Q+DV  AFL G L ++
Sbjct: 1019 ARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDD 1078

Query: 133  IYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPK 165
            +YM QP GFI +D+ + VCKL K LYGLKQAP+
Sbjct: 1079 VYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPR 1111

[Close]

BLAST of Cmc06g0166671 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-34
Identity = 68/153 (44.44%), Postives = 104/153 (67.97%), Query Frame = 0


Query: 13   ALSSVDANLWQEAINDEIDSLESNRTWHIV-NLPPGCKVIGCKWVLRKKLKPNGSVDKYK 72
            A+ ++  + W++A+  EI++   N TW +V   PP   ++GC+W+  KK   +GS+++YK
Sbjct: 942  AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYK 1001

Query: 73   ARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVKTAFLNGGLEEE 132
            ARLVAKG+ QR  +D  +TFS V + TSIR+++ +AV  +  I Q+DV  AFL G L +E
Sbjct: 1002 ARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDE 1061

Query: 133  IYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPK 165
            +YM QP GF+ +D+   VC+L K +YGLKQAP+
Sbjct: 1062 VYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPR 1094

[Close]

BLAST of Cmc06g0166671 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 8.0e-32
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 18   DANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKKLKPNGSVDKYKARLVAK 77
            D + W+EAIN E+++ + N TW I   P    ++  +WV   K    G+  +YKARLVA+
Sbjct: 902  DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVAR 961

Query: 78   GFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVKTAFLNGGLEEEIYMEQP 137
            GF Q+  ID  +TF+ V RI+S R ++S+ +  NL +HQMDVKTAFLNG L+EEIYM  P
Sbjct: 962  GFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP 1021

Query: 138  KGFIVQDQESKVCKLDKFLYGLKQAPK 165
            +G  +      VCKL+K +YGLKQA +
Sbjct: 1022 QG--ISCNSDNVCKLNKAIYGLKQAAR 1046

[Close]

BLAST of Cmc06g0166671 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-17
Identity = 38/86 (44.19%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 22  WQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKKLKPNGSVDKYKARLVAKGFRQ 81
           W +A+ +E+D+L  N+TW +V  P    ++GCKWV + KL  +G++D+ KARLVAKGF Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 82  RENIDLFDTFSSVTRITSIRVLISIA 108
            E I   +T+S V R  +IR ++++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc06g0166671 vs. ExPASy TrEMBL
Match: A0A5D3DGJ1 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G001310 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 146/165 (88.48%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           MYNIED KDLTEALSSVD NLWQ+AINDE+DSLESNRTWH+V+LPP CK IGCKWVLRKK
Sbjct: 1   MYNIEDQKDLTEALSSVDVNLWQKAINDEMDSLESNRTWHLVDLPPPCKAIGCKWVLRKK 60

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
            KP+GS+DKYKARLVAKGFRQREN+D FDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK
Sbjct: 61  FKPDGSIDKYKARLVAKGFRQRENMDFFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120

Query: 121 TAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           T FLNG LEEEIYMEQP+GFIVQ QESKVCKLDK LYGLKQAPK+
Sbjct: 121 TTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKE 165

[Close]

BLAST of Cmc06g0166671 vs. ExPASy TrEMBL
Match: A0A5A7T0X0 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00340 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 142/165 (86.06%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           MYNIED KDLT+ALSSVD NLWQ+AINDE+DSLESNRTWH+V+LPP CK IGCKWVLRKK
Sbjct: 1   MYNIEDQKDLTKALSSVDVNLWQKAINDEMDSLESNRTWHLVDLPPPCKAIGCKWVLRKK 60

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
            KP+GS+DKYKARLVAKGFRQ EN+D FDTFSSVTRITSIRVLISI +LNNLLIHQMDVK
Sbjct: 61  FKPDGSIDKYKARLVAKGFRQTENMDFFDTFSSVTRITSIRVLISIVILNNLLIHQMDVK 120

Query: 121 TAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           T FLNG LEEEIYMEQP+GFIVQ QESKVCKLDK LYGLKQAPK+
Sbjct: 121 TTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKE 165

[Close]

BLAST of Cmc06g0166671 vs. ExPASy TrEMBL
Match: A0A5A7TV55 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005950 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.0e-74
Identity = 145/165 (87.88%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           +YN+ED KDLTEALSSVDANLWQEAINDE+DSLESNRTWH+V+LPPGCK IGCKWVLRKK
Sbjct: 271 VYNVEDSKDLTEALSSVDANLWQEAINDEMDSLESNRTWHLVDLPPGCKAIGCKWVLRKK 330

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
           LKP+GSVDKYKARLVAKGFRQRENID FDTFS VTRITSIRVLISI  LNNLLIHQMDVK
Sbjct: 331 LKPDGSVDKYKARLVAKGFRQRENIDFFDTFSPVTRITSIRVLISIDALNNLLIHQMDVK 390

Query: 121 TAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           TAFLN  LEEEIYMEQ +GFIV  QESKVCKLDK LYGLKQA KQ
Sbjct: 391 TAFLNCDLEEEIYMEQFEGFIVHGQESKVCKLDKSLYGLKQASKQ 435

[Close]

BLAST of Cmc06g0166671 vs. ExPASy TrEMBL
Match: A0A5A7V1T0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00190 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.7e-73
Identity = 142/165 (86.06%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           MY++ED KDLTEALSSVDANLWQEA NDEIDSLESN+TWH+++LP GCK IGCK VL+KK
Sbjct: 1   MYSVEDPKDLTEALSSVDANLWQEATNDEIDSLESNKTWHLLDLPSGCKAIGCKRVLKKK 60

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
           LKP+ SVDKYKARLVAKGFRQRENID FDTFS VTRIT IRVLISIA LNNLLIHQMDVK
Sbjct: 61  LKPDRSVDKYKARLVAKGFRQRENIDFFDTFSPVTRITFIRVLISIAALNNLLIHQMDVK 120

Query: 121 TAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           TAFLNG LEEEIYM+QPKGFIV  QESKVCKLDK LYGLKQAPKQ
Sbjct: 121 TAFLNGDLEEEIYMKQPKGFIVHGQESKVCKLDKSLYGLKQAPKQ 165

[Close]

BLAST of Cmc06g0166671 vs. ExPASy TrEMBL
Match: A0A5D3DJH9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00620 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.3e-71
Identity = 137/165 (83.03%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 1   MYNIEDLKDLTEALSSVDANLWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKK 60
           MYN+ED KDLTEALSS+D NLWQEAINDE+DSLESNRTWH+V+LP GCKVIG KW+LRKK
Sbjct: 1   MYNVEDSKDLTEALSSIDVNLWQEAINDEMDSLESNRTWHLVDLPHGCKVIGYKWILRKK 60

Query: 61  LKPNGSVDKYKARLVAKGFRQRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVK 120
           +K +GSVDKYKARLVAKGFRQR+NI+ FDTFS VTRITSIRVLISI+ LNNLLIHQMDVK
Sbjct: 61  VKLDGSVDKYKARLVAKGFRQRKNINFFDTFSPVTRITSIRVLISISALNNLLIHQMDVK 120

Query: 121 TAFLNGGLEEEIYMEQPKGFIVQDQESKVCKLDKFLYGLKQAPKQ 166
           T FLNG LEEEIYMEQP+ FIV  QE KVCKLDK LYGL+QAPKQ
Sbjct: 121 TVFLNGDLEEEIYMEQPECFIVHGQEFKVCKLDKSLYGLQQAPKQ 165

[Close]

BLAST of Cmc06g0166671 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-37
Identity = 70/149 (46.98%), Postives = 105/149 (70.47%), Query Frame = 0


Query: 21  LWQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKKLKPNGSVDKYKARLVAKGFR 80
           +W  A++DEI ++E+  TW I  LPP  K IGCKWV + K   +G++++YKARLVAKG+ 
Sbjct: 97  VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYT 156

Query: 81  QRENIDLFDTFSSVTRITSIRVLISIAVLNNLLIHQMDVKTAFLNGGLEEEIYMEQPKGF 140
           Q+E ID  +TFS V ++TS++++++I+ + N  +HQ+D+  AFLNG L+EEIYM+ P G+
Sbjct: 157 QQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

Query: 141 IVQDQES----KVCKLDKFLYGLKQAPKQ 166
             +  +S     VC L K +YGLKQA +Q
Sbjct: 217 AARQGDSLPPNAVCYLKKSIYGLKQASRQ 245

[Close]

BLAST of Cmc06g0166671 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-18
Identity = 38/86 (44.19%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 22  WQEAINDEIDSLESNRTWHIVNLPPGCKVIGCKWVLRKKLKPNGSVDKYKARLVAKGFRQ 81
           W +A+ +E+D+L  N+TW +V  P    ++GCKWV + KL  +G++D+ KARLVAKGF Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 82  RENIDLFDTFSSVTRITSIRVLISIA 108
            E I   +T+S V R  +IR ++++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc06g0166671 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22685.1	7.8e-77	88.48	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
KAA0036533.1	4.3e-75	86.06	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
KAA0046026.1	2.1e-74	87.88	putative Polyprotein [Cucumis melo var. makuwa]	[more]
KAA0059671.1	1.2e-72	86.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0048556.1	1.1e-70	100.00	putative Polyprotein [Cucumis melo var. makuwa] >TYK28358.1 putative Polyprotein...	[more]

BLAST of Cmc06g0166671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.3e-37	49.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	2.2e-34	45.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.2e-34	44.44	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	8.0e-32	46.94	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	7.3e-17	44.19	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc06g0166671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DGJ1	3.8e-77	88.48	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5A7T0X0	2.1e-75	86.06	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7TV55	1.0e-74	87.88	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243...	[more]
A0A5A7V1T0	5.7e-73	86.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DJH9	5.3e-71	83.03	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold160...	[more]

BLAST of Cmc06g0166671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.7e-37	46.98	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	5.2e-18	44.19	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 36..164 e-value: 9.8E-47 score: 159.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 11..164
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 36..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0166671.1	Cmc06g0166671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding