Cmc06g0166551 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0166551
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 19086281 .. 19086983 (+)
RNA-Seq Expression	Cmc06g0166551
Synteny	Cmc06g0166551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGAGTTGTCAATGATAGAGAAAAACAAAACTTGGATCCTTGTTGACAGACCTCAAGACAGGAAGGTAATTGGAGTTAAATTGGTGTTTAGAATCAAGCTTAATGTTGATGGCTCGATTAACAAGCACAAATCCAGGCTTGTGGTTAAAGGGTATGCTTAAATCTTTGGTATTGATTACTCTAAAACTGTTTTTTTCTGTTACAAGAATGGAGAAAATCAGGTTACTATTTGCAATAGCTGCACAAAAGGGCTGGAAATTGTTTCAGTTGGATGTCGAATCATCTTTTTTGAATGGTGTCTTACAAGAAGAAATTTATGTTGAGCAGCTCGAAGGATGTGAGAAGCAAGGTGAAGGAAATAAACTCTATCTTCTCAAGAAGGCTCTTTATGGTTTAAAACAAGCTCTAAGAGCTTGGTATAAGAAAGTTGATGAACATTTACTGAGCTTTGGATTTTTTAAAAGTCTATCAGAATCAACCTTATATGTCAAGCACAATGGTACTGGCATTCTTATTATTTCACTGTATGTTGATGAGCTACTGGTTACAGGAAACAATGCAAATGATATTCAAAATTTCAAATGGGAGATGATAAAGATGTTTGAAATGACAGATCTCGGGCTCATGTCCTACTTCCTTGGCATAGAGATCAAGCAAGGGCAAGGTGAAGTTTTCATCTGCCAAAAAAATATGTAA

mRNA sequence

ATGGAGGAGGAGTTGTCAATGATAGAGAAAAACAAAACTTGGATCCTTGTTGACAGACCTCAAGACAGGAAGGTAATTGGAGTTAAATTGGTGTTTAGAATCAAGCTTAATGTTGATGGCTCGATTAACAAGCACAAATCCAGGCTTGTGGTTAAAGGGTTACTATTTGCAATAGCTGCACAAAAGGGCTGGAAATTGTTTCAGTTGGATGTCGAATCATCTTTTTTGAATGGTGTCTTACAAGAAGAAATTTATGTTGAGCAGCTCGAAGGATGTGAGAAGCAAGGTGAAGGAAATAAACTCTATCTTCTCAAGAAGGCTCTTTATGGTTTAAAACAAGCTCTAAGAGCTTGGTATAAGAAAGTTGATGAACATTTACTGAGCTTTGGATTTTTTAAAAGTCTATCAGAATCAACCTTATATGTCAAGCACAATGGTACTGGCATTCTTATTATTTCACTGTATGTTGATGAGCTACTGGTTACAGGAAACAATGCAAATGATATTCAAAATTTCAAATGGGAGATGATAAAGATGTTTGAAATGACAGATCTCGGGCTCATGTCCTACTTCCTTGGCATAGAGATCAAGCAAGGGCAAGGTGAAGTTTTCATCTGCCAAAAAAATATGTAA

Coding sequence (CDS)

ATGGAGGAGGAGTTGTCAATGATAGAGAAAAACAAAACTTGGATCCTTGTTGACAGACCTCAAGACAGGAAGGTAATTGGAGTTAAATTGGTGTTTAGAATCAAGCTTAATGTTGATGGCTCGATTAACAAGCACAAATCCAGGCTTGTGGTTAAAGGGTTACTATTTGCAATAGCTGCACAAAAGGGCTGGAAATTGTTTCAGTTGGATGTCGAATCATCTTTTTTGAATGGTGTCTTACAAGAAGAAATTTATGTTGAGCAGCTCGAAGGATGTGAGAAGCAAGGTGAAGGAAATAAACTCTATCTTCTCAAGAAGGCTCTTTATGGTTTAAAACAAGCTCTAAGAGCTTGGTATAAGAAAGTTGATGAACATTTACTGAGCTTTGGATTTTTTAAAAGTCTATCAGAATCAACCTTATATGTCAAGCACAATGGTACTGGCATTCTTATTATTTCACTGTATGTTGATGAGCTACTGGTTACAGGAAACAATGCAAATGATATTCAAAATTTCAAATGGGAGATGATAAAGATGTTTGAAATGACAGATCTCGGGCTCATGTCCTACTTCCTTGGCATAGAGATCAAGCAAGGGCAAGGTGAAGTTTTCATCTGCCAAAAAAATATGTAA

Protein sequence

MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKGLLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGEGNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVDELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKNM

Homology

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BLAST of Cmc06g0166551 vs. NCBI nr
Match: KAA0048536.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK28339.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 3.6e-103
Identity = 200/214 (93.46%), Postives = 202/214 (94.39%), Query Frame = 0


Query: 1   MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG-----LL 60
           MEEELSMIEKNKTWILVDRPQDRKVI VKLVFRIKLNVDGSINKHKSRLVVKG     LL
Sbjct: 359 MEEELSMIEKNKTWILVDRPQDRKVIRVKLVFRIKLNVDGSINKHKSRLVVKGMEKIRLL 418

Query: 61  FAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGEGNKLYLLKKALYGLKQAL 120
           FAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGEGNKLYLLKKALYGLKQAL
Sbjct: 419 FAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGEGNKLYLLKKALYGLKQAL 478

Query: 121 RAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVDELLVTGNNANDIQNFKWE 180
           RAWYKKVDEHLLS GFFKSLSESTLYVKHNGTGILIISLYVDELLVTGNNANDIQNFKWE
Sbjct: 479 RAWYKKVDEHLLSLGFFKSLSESTLYVKHNGTGILIISLYVDELLVTGNNANDIQNFKWE 538

Query: 181 MIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKN 210
           MIKMFEMTDLGLMSYFLGIEIKQGQ    + QK+
Sbjct: 539 MIKMFEMTDLGLMSYFLGIEIKQGQVSTPMNQKD 572

[Close]

BLAST of Cmc06g0166551 vs. NCBI nr
Match: KAA0025181.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 187/231 (80.95%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG------- 60
            MEEELSMIEKNKTWILVDRPQDRKVIGVK VFR KLN DGSINKHK+RLVVKG       
Sbjct: 796  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGV 855

Query: 61   ----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGE 120
                            LLFAIAAQKGWKL+QLDV+S+FLNGVLQEEIYVEQ EGCEKQGE
Sbjct: 856  DYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGE 915

Query: 121  GNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVD 180
             NK+YLLKKALYGLKQA RAWY K+DEHLLS GF KSLSESTLYVKHNGT ILI+SLYVD
Sbjct: 916  RNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVD 975

Query: 181  ELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 209
            +LLVTGNNA+ IQNFKWEM+KMFEMTDLGLMSYFLGIEIKQGQGEVFICQK
Sbjct: 976  DLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 1026

[Close]

BLAST of Cmc06g0166551 vs. NCBI nr
Match: TYJ95793.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04080.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07482.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23562.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK24808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 187/231 (80.95%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG------- 60
            MEEELSMIEKNKTWILVDRPQDRKVIGVK VFR KLN DGSINKHK+RLVVKG       
Sbjct: 824  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGV 883

Query: 61   ----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGE 120
                            LLFAIAAQKGWKL+QLDV+S+FLNGVLQEEIYVEQ EGCEKQGE
Sbjct: 884  DYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGE 943

Query: 121  GNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVD 180
             NK+YLLKKALYGLKQA RAWY K+DEHLLS GF KSLSESTLYVKHNGT ILI+SLYVD
Sbjct: 944  RNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVD 1003

Query: 181  ELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 209
            +LLVTGNNA+ IQNFKWEM+KMFEMTDLGLMSYFLGIEIKQGQGEVFICQK
Sbjct: 1004 DLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 1054

[Close]

BLAST of Cmc06g0166551 vs. NCBI nr
Match: TYK16957.1 (ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 187/231 (80.95%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG------- 60
            MEEELSMIEKNKTWILVDRPQDRKVIGVK VFR KLN DGSINKHK+RLVVKG       
Sbjct: 1052 MEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGV 1111

Query: 61   ----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGE 120
                            LLFAIAAQKGWKL+QLDV+S+FLNGVLQEEIYVEQ EGCEKQGE
Sbjct: 1112 DYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGE 1171

Query: 121  GNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVD 180
             NK+YLLKKALYGLKQA RAWY K+DEHLLS GF KSLSESTLYVKHNGT ILI+SLYVD
Sbjct: 1172 RNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVD 1231

Query: 181  ELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 209
            +LLVTGNNA+ IQNFKWEM+KMFEMTDLGLMSYFLGIEIKQGQGEVFICQK
Sbjct: 1232 DLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 1282

[Close]

BLAST of Cmc06g0166551 vs. NCBI nr
Match: KAA0035947.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 187/231 (80.95%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG------- 60
            MEEELSMIEKNKTWILVDRPQDRKVIGVK VFR KLN DGSINKHK+RLVVKG       
Sbjct: 824  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGV 883

Query: 61   ----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGE 120
                            LLFAIAAQKGWKL+QLDV+S+FLNGVLQEEIYVEQ EGCEKQGE
Sbjct: 884  DYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGE 943

Query: 121  GNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVD 180
             NK+YLLKKALYGLKQA RAWY K+DEHLLS GF KSLSESTLYVKHNGT ILI+SLYVD
Sbjct: 944  RNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVD 1003

Query: 181  ELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 209
            +LLVTGNNA+ IQNFKWEM+KMFEMTDLGLMSYFLGIEIKQGQGEVFICQK
Sbjct: 1004 DLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 1054

[Close]

BLAST of Cmc06g0166551 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.9e-31
Identity = 77/222 (34.68%), Postives = 123/222 (55.41%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDR-KVIGVKLVFRIKLNVDGSINKHKSRLVVKG------ 60
            M  E++    N TW LV  P     ++G + +F  K N DGS+N++K+RLV KG      
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   -----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQG 120
                             ++  +A  + W + QLDV ++FL G L +++Y+ Q  G   + 
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1091

Query: 121  EGNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYV 180
              N +  L+KALYGLKQA RAWY ++  +LL+ GF  S+S+++L+V   G  I+ + +YV
Sbjct: 1092 RPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYV 1151

Query: 181  DELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQ 199
            D++L+TGN+   + N    + + F + D   + YFLGIE K+
Sbjct: 1152 DDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKR 1193

[Close]

BLAST of Cmc06g0166551 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.3e-30
Identity = 78/220 (35.45%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKGL------ 60
            M+EE+  ++KN T+ LV+ P+ ++ +  K VF++K + D  + ++K+RLVVKG       
Sbjct: 830  MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61   -----------------LFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGE 120
                             + ++AA    ++ QLDV+++FL+G L+EEIY+EQ EG E  G+
Sbjct: 890  DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121  GNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKH-NGTGILIISLYV 180
             + +  L K+LYGLKQA R WY K D  + S  + K+ S+  +Y K  +    +I+ LYV
Sbjct: 950  KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYV 1009

Query: 181  DELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEI 197
            D++L+ G +   I   K ++ K F+M DLG     LG++I
Sbjct: 1010 DDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKI 1049

[Close]

BLAST of Cmc06g0166551 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 74/222 (33.33%), Postives = 124/222 (55.86%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDR-KVIGVKLVFRIKLNVDGSINKHKSRLVVKG------ 60
            M  E++    N TW LV  P     ++G + +F  K N DGS+N++K+RLV KG      
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   -----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQG 120
                             ++  +A  + W + QLDV ++FL G L +E+Y+ Q  G   + 
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKD 1074

Query: 121  EGNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYV 180
              + +  L+KA+YGLKQA RAWY ++  +LL+ GF  S+S+++L+V   G  I+ + +YV
Sbjct: 1075 RPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYV 1134

Query: 181  DELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQ 199
            D++L+TGN+   +++    + + F + +   + YFLGIE K+
Sbjct: 1135 DDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKR 1176

[Close]

BLAST of Cmc06g0166551 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 115.5 bits (288), Expect = 7.1e-25
Identity = 66/229 (28.82%), Postives = 122/229 (53.28%), Query Frame = 0


Query: 4    ELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG---------- 63
            EL+  + N TW +  RP+++ ++  + VF +K N  G+  ++K+RLV +G          
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   -------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGEGNK 123
                          + ++  Q   K+ Q+DV+++FLNG L+EEIY+   +G     +   
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSD--N 1032

Query: 124  LYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYV--KHNGTGILIISLYVDE 183
            +  L KA+YGLKQA R W++  ++ L    F  S  +  +Y+  K N    + + LYVD+
Sbjct: 1033 VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDD 1092

Query: 184  LLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQ 208
            +++   +   + NFK  +++ F MTDL  + +F+GI I+  + ++++ Q
Sbjct: 1093 VVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQ 1139

[Close]

BLAST of Cmc06g0166551 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-15
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 69  LDVESSFLNGVLQEEIYVEQLEGCEKQGEGNKLYLLKKALYGLKQALRAWYKKVDEHLLS 128
           +DV+++FLN  + E IYV+Q  G   +   + ++ L   +YGLKQA   W + ++  L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 129 FGFFKSLSESTLYVKHNGTGILIISLYVDELLVTGNNANDIQNFKWEMIKMFEMTDLGLM 188
            GF +   E  LY +    G + I++YVD+LLV   +       K E+ K++ M DLG +
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 189 SYFLGIEIKQ 199
             FLG+ I Q
Sbjct: 121 DKFLGLNIHQ 130

[Close]

BLAST of Cmc06g0166551 vs. ExPASy TrEMBL
Match: A0A5D3DYA2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001740 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.8e-103
Identity = 200/214 (93.46%), Postives = 202/214 (94.39%), Query Frame = 0


Query: 1   MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG-----LL 60
           MEEELSMIEKNKTWILVDRPQDRKVI VKLVFRIKLNVDGSINKHKSRLVVKG     LL
Sbjct: 359 MEEELSMIEKNKTWILVDRPQDRKVIRVKLVFRIKLNVDGSINKHKSRLVVKGMEKIRLL 418

Query: 61  FAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGEGNKLYLLKKALYGLKQAL 120
           FAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGEGNKLYLLKKALYGLKQAL
Sbjct: 419 FAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGEGNKLYLLKKALYGLKQAL 478

Query: 121 RAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVDELLVTGNNANDIQNFKWE 180
           RAWYKKVDEHLLS GFFKSLSESTLYVKHNGTGILIISLYVDELLVTGNNANDIQNFKWE
Sbjct: 479 RAWYKKVDEHLLSLGFFKSLSESTLYVKHNGTGILIISLYVDELLVTGNNANDIQNFKWE 538

Query: 181 MIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKN 210
           MIKMFEMTDLGLMSYFLGIEIKQGQ    + QK+
Sbjct: 539 MIKMFEMTDLGLMSYFLGIEIKQGQVSTPMNQKD 572

[Close]

BLAST of Cmc06g0166551 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.4e-97
Identity = 187/231 (80.95%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG------- 60
            MEEELSMIEKNKTWILVDRPQDRKVIGVK VFR KLN DGSINKHK+RLVVKG       
Sbjct: 824  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGV 883

Query: 61   ----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGE 120
                            LLFAIAAQKGWKL+QLDV+S+FLNGVLQEEIYVEQ EGCEKQGE
Sbjct: 884  DYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGE 943

Query: 121  GNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVD 180
             NK+YLLKKALYGLKQA RAWY K+DEHLLS GF KSLSESTLYVKHNGT ILI+SLYVD
Sbjct: 944  RNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVD 1003

Query: 181  ELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 209
            +LLVTGNNA+ IQNFKWEM+KMFEMTDLGLMSYFLGIEIKQGQGEVFICQK
Sbjct: 1004 DLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 1054

[Close]

BLAST of Cmc06g0166551 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.4e-97
Identity = 187/231 (80.95%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG------- 60
            MEEELSMIEKNKTWILVDRPQDRKVIGVK VFR KLN DGSINKHK+RLVVKG       
Sbjct: 824  MEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGV 883

Query: 61   ----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGE 120
                            LLFAIAAQKGWKL+QLDV+S+FLNGVLQEEIYVEQ EGCEKQGE
Sbjct: 884  DYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGE 943

Query: 121  GNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVD 180
             NK+YLLKKALYGLKQA RAWY K+DEHLLS GF KSLSESTLYVKHNGT ILI+SLYVD
Sbjct: 944  RNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVD 1003

Query: 181  ELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 209
            +LLVTGNNA+ IQNFKWEM+KMFEMTDLGLMSYFLGIEIKQGQGEVFICQK
Sbjct: 1004 DLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 1054

[Close]

BLAST of Cmc06g0166551 vs. ExPASy TrEMBL
Match: A0A5D3CYZ9 (ATP-dependent DNA helicase 2 subunit KU70 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00960 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.4e-97
Identity = 187/231 (80.95%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG------- 60
            MEEELSMIEKNKTWILVDRPQDRKVIGVK VFR KLN DGSINKHK+RLVVKG       
Sbjct: 1052 MEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGV 1111

Query: 61   ----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGE 120
                            LLFAIAAQKGWKL+QLDV+S+FLNGVLQEEIYVEQ EGCEKQGE
Sbjct: 1112 DYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGE 1171

Query: 121  GNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVD 180
             NK+YLLKKALYGLKQA RAWY K+DEHLLS GF KSLSESTLYVKHNGT ILI+SLYVD
Sbjct: 1172 RNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVD 1231

Query: 181  ELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 209
            +LLVTGNNA+ IQNFKWEM+KMFEMTDLGLMSYFLGIEIKQGQGEVFICQK
Sbjct: 1232 DLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 1282

[Close]

BLAST of Cmc06g0166551 vs. ExPASy TrEMBL
Match: A0A5D3BL45 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00490 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.4e-97
Identity = 187/231 (80.95%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 1    MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG------- 60
            MEEELSMIEKNKTWILVDRPQDRKVIGVK VFR KLN DGSINKHK+RLVVKG       
Sbjct: 1443 MEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGV 1502

Query: 61   ----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEGCEKQGE 120
                            LLFAIAAQKGWKL+QLDV+S+FLNGVLQEEIYVEQ EGCEKQGE
Sbjct: 1503 DYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGE 1562

Query: 121  GNKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIISLYVD 180
             NK+YLLKKALYGLKQA RAWY K+DEHLLS GF KSLSESTLYVKHNGT ILI+SLYVD
Sbjct: 1563 RNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVD 1622

Query: 181  ELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 209
            +LLVTGNNA+ IQNFKWEM+KMFEMTDLGLMSYFLGIEIKQGQGEVFICQK
Sbjct: 1623 DLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 1673

[Close]

BLAST of Cmc06g0166551 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-36
Identity = 85/235 (36.17%), Postives = 133/235 (56.60%), Query Frame = 0


Query: 1   MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG------- 60
           M++E+  +E   TW +   P ++K IG K V++IK N DG+I ++K+RLV KG       
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  ----------------LLFAIAAQKGWKLFQLDVESSFLNGVLQEEIYVEQLEG-CEKQG 120
                           L+ AI+A   + L QLD+ ++FLNG L EEIY++   G   +QG
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 EG---NKLYLLKKALYGLKQALRAWYKKVDEHLLSFGFFKSLSESTLYVKHNGTGILIIS 180
           +    N +  LKK++YGLKQA R W+ K    L+ FGF +S S+ T ++K   T  L + 
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVL 281

Query: 181 LYVDELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQK 209
           +YVD++++  NN   +   K ++   F++ DLG + YFLG+EI +    + ICQ+
Sbjct: 282 VYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQR 336

[Close]

BLAST of Cmc06g0166551 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-09
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 1  MEEELSMIEKNKTWILVDRPQDRKVIGVKLVFRIKLNVDGSINKHKSRLVVKG 54
          M+EEL  + +NKTWILV  P ++ ++G K VF+ KL+ DG++++ K+RLV KG
Sbjct: 44 MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKG 96

[Close]

BLAST of Cmc06g0166551 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 8.3e-05
Identity = 21/58 (36.21%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 150 LIISLYVDELLVTGNNANDIQNFKWEMIKMFEMTDLGLMSYFLGIEIKQGQGEVFICQ 208
           + + LYVD++L+TG++   +    +++   F M DLG + YFLGI+IK     +F+ Q
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQ 58

The following BLAST results are available for this feature:

BLAST of Cmc06g0166551 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048536.1	3.6e-103	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0025181.1	1.9e-96	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ95793.1	1.9e-96	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK16957.1	1.9e-96	80.95	ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa]	[more]
KAA0035947.1	1.9e-96	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc06g0166551 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	3.9e-31	34.68	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	7.3e-30	35.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.8e-29	33.33	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	7.1e-25	28.82	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	2.3e-15	34.62	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc06g0166551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYA2	1.8e-103	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E2V7	9.4e-97	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DMJ1	9.4e-97	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CYZ9	9.4e-97	80.95	ATP-dependent DNA helicase 2 subunit KU70 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3BL45	9.4e-97	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc06g0166551 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.8e-36	36.17	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.3e-09	49.06	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	8.3e-05	36.21	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 54..209 e-value: 5.9E-47 score: 160.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 20..208
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 10..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0166551.1	Cmc06g0166551.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0000723	telomere maintenance
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0043564	Ku70:Ku80 complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0042162	telomeric DNA binding
molecular_function	GO:0008270	zinc ion binding