Cmc06g0165891 (gene) Melon (Charmono) v1.1

Overview
NameCmc06g0165891
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
LocationCMiso1.1chr06: 17951287 .. 17952649 (+)
RNA-Seq ExpressionCmc06g0165891
SyntenyCmc06g0165891
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTCTTCATCTTCTTCTCTAAGATAACCCTCTGCTGTCGCCGCCTCATCAGTTGAAGTTAAGATTGGTCTCCTTGGAAGCTTGAGAATTTAAAGTGAAGAATTATTCCATCAAGGATAAGAGGATTTTTTTTCAACCTCCATCTAAGTAACCTTGGTAAGCTAATGAAATTAAATTAATATTTTATTAATTTAATTTTGGATCTATTTGGGGTTTCTTTAAAGGTTCAATTGGCTAAACTTTTTAAGATTTAAATCTTGGATTTTTTCCAATCAAGGTTGAATTGGTTTCAACCCCTTTTGTTTGAGAAGTTAATTAATTTGGGAGAATTTTTGGATGTTAGTCAATTGCTAATTTCATTAATCAAGATACTAAGTTTTCCTTTTATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTCCTACTAGACCTTCGAACTGAATTTAGGAGACCGCATGTAATTATGATTATGTATTGATGGTAGCTAAAATGCATAATTTGATGCCTATTGATAATGACTGAGATTACTATGTTCATGATTGATGTTGATGACTGGTGTCATGTTATGACTGGTAGTATGTTGATGAAGATGACTGAGATTATTATGTTGATGATTGTTGATACATGATATATTAATCACATGATTAAGAACGTTAAGATTAATATTCATGTCATGTTATGATGTTATGTTGTGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTATCTATTAGAGTCGTACCCACATGGGTGTTCTTCGGGATCACCACCTTTTTAGGACTGCGTAGTCCGACGGGACCACCAGTCTGACATTGACATTGACACAGACATGATTTGAGAGATCCGACGGGATCGCTCACACTTATGACTGCGTAGTCCGACGAGACCGCCAGTCTGACATTGACATTGACATAAACATGATTTGAGTGATTCGACGGGATTACTCACAGCCCGATCGTCTTAGGTGTTCCCTTGGATTCACCAGAGACCAGCTTGTTCCTACGGGATCACAGATTGCACGTGTTTGGGAACGTGCCACTTCAGGGGTACTTCTTTACAAGACTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAATGGGTCCCTTACTGAGTATTTGTTTATACTCACTCTTTCTATGTTTAACATTTCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGTCAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTCTATGTTTCAATGTTTTAATATTCCGTTTTTAATAAAAGTTTAGTCTTCCCTCCTTTAAAAAAAA

mRNA sequence

GGTTCTTCATCTTCTTCTCTAAGATAACCCTCTGCTGTCGCCGCCTCATCAGTTGAAGTTAAGATTGGTCTCCTTGGAAGCTTGAGAATTTAAAGTGAAGAATTATTCCATCAAGGATAAGAGGATTTTTTTTCAACCTCCATCTAAGTAACCTTGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTTGTTTGGCTAAAATCTCCAGATTACTATGTTCATGATTGATGTTGATGACTGGTGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGTCAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTCTATGTTTCAATGTTTTAATATTCCGTTTTTAATAAAAGTTTAGTCTTCCCTCCTTTAAAAAAAA

Coding sequence (CDS)

ATGTTCATGATTGATGTTGATGACTGGTGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGTCAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTCTATGTTTCAATGTTTTAA

Protein sequence

MFMIDVDDWCEGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF
Homology
[Close]
BLAST of Cmc06g0165891 vs. NCBI nr
Match: TYK11706.1 (hypothetical protein E5676_scaffold304G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 10 CEGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          CEGKGRGKLAS REGSVTCHMGTQFCFRVYVS+F
Sbjct: 66 CEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 99

[Close]
BLAST of Cmc06g0165891 vs. NCBI nr
Match: KAA0046082.1 (hypothetical protein E6C27_scaffold157G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 3.1e-09
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 10 CEGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          CEGKGRGKLAS +EGSVTCHMGTQFCFR+YVS+F
Sbjct: 18 CEGKGRGKLASDKEGSVTCHMGTQFCFRIYVSVF 51

[Close]
BLAST of Cmc06g0165891 vs. NCBI nr
Match: KAA0061344.1 (hypothetical protein E6C27_scaffold749G00240 [Cucumis melo var. makuwa] >TYK14697.1 hypothetical protein E5676_scaffold692G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 9.1e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 11 EGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          EGKGRGKLAS REGSVTCHMGTQFCFRVYVS+F
Sbjct: 67 EGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 99

[Close]
BLAST of Cmc06g0165891 vs. NCBI nr
Match: KAA0049914.1 (uncharacterized protein E6C27_scaffold13G00710 [Cucumis melo var. makuwa] >TYK04257.1 uncharacterized protein E5676_scaffold13462G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 9.1e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 11 EGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          EGKGRGKLAS REGSVTCHMGTQFCFRVYVS+F
Sbjct: 29 EGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 61

[Close]
BLAST of Cmc06g0165891 vs. NCBI nr
Match: KAA0063966.1 (hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 9.1e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 11 EGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          EGKGRGKLAS REGSVTCHMGTQFCFRVYVS+F
Sbjct: 25 EGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

[Close]
BLAST of Cmc06g0165891 vs. ExPASy TrEMBL
Match: A0A5D3CMP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00150 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-10
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 10 CEGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          CEGKGRGKLAS REGSVTCHMGTQFCFRVYVS+F
Sbjct: 66 CEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 99

[Close]
BLAST of Cmc06g0165891 vs. ExPASy TrEMBL
Match: A0A5A7TRQ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00030 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 10 CEGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          CEGKGRGKLAS +EGSVTCHMGTQFCFR+YVS+F
Sbjct: 18 CEGKGRGKLASDKEGSVTCHMGTQFCFRIYVSVF 51

[Close]
BLAST of Cmc06g0165891 vs. ExPASy TrEMBL
Match: A0A5A7US87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002710 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 11 EGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          +GKGRGKLAS REGSVTCHMGTQFCFRVYVSMF
Sbjct: 67 KGKGRGKLASDREGSVTCHMGTQFCFRVYVSMF 99

[Close]
BLAST of Cmc06g0165891 vs. ExPASy TrEMBL
Match: A0A5D3BBT8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002550 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 11 EGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          EGKGRGKLAS REGSVTCHMGTQFCFRVYVS+F
Sbjct: 30 EGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 62

[Close]
BLAST of Cmc06g0165891 vs. ExPASy TrEMBL
Match: A0A5A7V266 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00230 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 11 EGKGRGKLASVREGSVTCHMGTQFCFRVYVSMF 44
          EGKGRGKLAS REGSVTCHMGTQFCFRVYVS+F
Sbjct: 67 EGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 99

The following BLAST results are available for this feature:
BLAST of Cmc06g0165891 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11706.11.1e-0994.12hypothetical protein E5676_scaffold304G00150 [Cucumis melo var. makuwa][more]
KAA0046082.13.1e-0988.24hypothetical protein E6C27_scaffold157G00030 [Cucumis melo var. makuwa][more]
KAA0061344.19.1e-0993.94hypothetical protein E6C27_scaffold749G00240 [Cucumis melo var. makuwa] >TYK1469... [more]
KAA0049914.19.1e-0993.94uncharacterized protein E6C27_scaffold13G00710 [Cucumis melo var. makuwa] >TYK04... [more]
KAA0063966.19.1e-0993.94hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa][more]
BLAST of Cmc06g0165891 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc06g0165891 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CMP95.2e-1094.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRQ71.5e-0988.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7US874.4e-0993.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BBT84.4e-0993.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2664.4e-0993.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Cmc06g0165891 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc06g0165891.1Cmc06g0165891.1mRNA