Cmc06g0165871 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0165871
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 17924241 .. 17925026 (-)
RNA-Seq Expression	Cmc06g0165871
Synteny	Cmc06g0165871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTTATCACGGGACTGCCCAAGACCTTGAAGGGCTACACGGTGATCTGGGTTGTGGTCGACAGACTCACGAAGACAGCCCACTTCGTGCCAGGGAAATCCACGTACACTGCCAGCAAGTGGGGGCAGTTATACATGACGGAAATAGTAAGACTGCACGGAGTACCAGTATCCATCGTTTCAGACAGGGATGCCCGTTTCACTTCGAAATTTTGGCAAGGGCTCCAACTTGCATTAGGTACGAGGCTGGACTTCAGCACGGCATTCCACCCTCAGACTGATGGTCAGACAGAGAGACTGAACCAGATTTTGGAGGATATGCTGCGGGCCTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCACCTGCATCTAATGGAGTTCGCCTATAATAACAGTTACCAGGCTACCATTGGTATGGCTCCGTTTGAGGCTCTGTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGCCCCGAGTTAGTGCAGACTACCAATGCAGCCATACAGAAGATCCGAGCTCGTATGCTGACCGCACAGAGCAGACAGAAGAGTTACGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTTTGAAGGTAGCACCGATGAAGGGCGTTCTGAGGTTCGAGAAGAAGGGGAAGTTGAGTCCACGTTTCGTGGGGCCATTTGAGATACTGGAACGGATTGGCCCTGTGGCTTATCGTTTGGCCTTGCCCCATCCTCTCAGCAGTGCATGA

mRNA sequence

ATGGACTTTATCACGGGACTGCCCAAGACCTTGAAGGGCTACACGGTGATCTGGGTTGTGGTCGACAGACTCACGAAGACAGCCCACTTCGTGCCAGGGAAATCCACGTACACTGCCAGCAAGTGGGGGCAGTTATACATGACGGAAATAGTAAGACTGCACGGAGTACCAGTATCCATCGTTTCAGACAGGGATGCCCGTTTCACTTCGAAATTTTGGCAAGGGCTCCAACTTGCATTAGGTACGAGGCTGGACTTCAGCACGGCATTCCACCCTCAGACTGATGGTCAGACAGAGAGACTGAACCAGATTTTGGAGGATATGCTGCGGGCCTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCACCTGCATCTAATGGAGTTCGCCTATAATAACAGTTACCAGGCTACCATTGGTATGGCTCCGTTTGAGGCTCTGTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGCCCCGAGTTAGTGCAGACTACCAATGCAGCCATACAGAAGATCCGAGCTCGTATGCTGACCGCACAGAGCAGACAGAAGAGTTACGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTTTGAAGGTAGCACCGATGAAGGGCGTTCTGAGGTTCGAGAAGAAGGGGAAGTTGAGTCCACGTTTCGTGGGGCCATTTGAGATACTGGAACGGATTGGCCCTGTGGCTTATCGTTTGGCCTTGCCCCATCCTCTCAGCAGTGCATGA

Coding sequence (CDS)

ATGGACTTTATCACGGGACTGCCCAAGACCTTGAAGGGCTACACGGTGATCTGGGTTGTGGTCGACAGACTCACGAAGACAGCCCACTTCGTGCCAGGGAAATCCACGTACACTGCCAGCAAGTGGGGGCAGTTATACATGACGGAAATAGTAAGACTGCACGGAGTACCAGTATCCATCGTTTCAGACAGGGATGCCCGTTTCACTTCGAAATTTTGGCAAGGGCTCCAACTTGCATTAGGTACGAGGCTGGACTTCAGCACGGCATTCCACCCTCAGACTGATGGTCAGACAGAGAGACTGAACCAGATTTTGGAGGATATGCTGCGGGCCTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCACCTGCATCTAATGGAGTTCGCCTATAATAACAGTTACCAGGCTACCATTGGTATGGCTCCGTTTGAGGCTCTGTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGCCCCGAGTTAGTGCAGACTACCAATGCAGCCATACAGAAGATCCGAGCTCGTATGCTGACCGCACAGAGCAGACAGAAGAGTTACGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTTTGAAGGTAGCACCGATGAAGGGCGTTCTGAGGTTCGAGAAGAAGGGGAAGTTGAGTCCACGTTTCGTGGGGCCATTTGAGATACTGGAACGGATTGGCCCTGTGGCTTATCGTTTGGCCTTGCCCCATCCTCTCAGCAGTGCATGA

Protein sequence

MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIVSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPHPLSSA

Homology

[Close]

BLAST of Cmc06g0165871 vs. NCBI nr
Match: KAA0025917.1 (pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo var. makuwa] >KAA0048622.1 pol protein [Cucumis melo var. makuwa] >KAA0056306.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 525.8 bits (1353), Expect = 2.1e-145
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1191 MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1250

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1251 VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1310

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1311 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1370

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE
Sbjct: 1371 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 1430

Query: 241  ILERIGPVAYRLALPHPLSS 261
            ILERIGPVAYRLALP  LS+
Sbjct: 1431 ILERIGPVAYRLALPPSLSA 1450

[Close]

BLAST of Cmc06g0165871 vs. NCBI nr
Match: KAA0032541.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 517.3 bits (1331), Expect = 7.6e-143
Identity = 251/255 (98.43%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            +SDRDARFTSKFW+GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1325

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFE
Sbjct: 1326 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1385

Query: 241  ILERIGPVAYRLALP 256
            ILERIGPVAYRLALP
Sbjct: 1386 ILERIGPVAYRLALP 1400

[Close]

BLAST of Cmc06g0165871 vs. NCBI nr
Match: TYK20443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 516.9 bits (1330), Expect = 1.0e-142
Identity = 251/255 (98.43%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1510 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1569

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            VSDRDARFTSKFW+GLQ+ALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1570 VSDRDARFTSKFWKGLQIALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1629

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1630 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1689

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFE
Sbjct: 1690 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1749

Query: 241  ILERIGPVAYRLALP 256
            ILERIGPVAYRLALP
Sbjct: 1750 ILERIGPVAYRLALP 1764

[Close]

BLAST of Cmc06g0165871 vs. NCBI nr
Match: KAA0025998.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 516.9 bits (1330), Expect = 1.0e-142
Identity = 251/255 (98.43%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1174 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1233

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            VSDRDARFTSKFW+GLQ+ALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1234 VSDRDARFTSKFWKGLQIALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1293

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1294 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1353

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFE
Sbjct: 1354 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1413

Query: 241  ILERIGPVAYRLALP 256
            ILERIGPVAYRLALP
Sbjct: 1414 ILERIGPVAYRLALP 1428

[Close]

BLAST of Cmc06g0165871 vs. NCBI nr
Match: TYK01576.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 516.9 bits (1330), Expect = 1.0e-142
Identity = 251/255 (98.43%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1511 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1570

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            VSDRDARFTSKFW+GLQ+ALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1571 VSDRDARFTSKFWKGLQIALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1630

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1631 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1690

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFE
Sbjct: 1691 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1750

Query: 241  ILERIGPVAYRLALP 256
            ILERIGPVAYRLALP
Sbjct: 1751 ILERIGPVAYRLALP 1765

[Close]

BLAST of Cmc06g0165871 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-35
Identity = 89/257 (34.63%), Postives = 136/257 (52.92%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            ++D D  FTS+ W+         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAI 180
              H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGP 240
            Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALP 256
            F +L++ GP  Y L LP
Sbjct: 1229 FYVLQKSGPNNYELDLP 1238

[Close]

BLAST of Cmc06g0165871 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-35
Identity = 89/257 (34.63%), Postives = 136/257 (52.92%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            ++D D  FTS+ W+         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAI 180
              H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGP 240
            Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALP 256
            F +L++ GP  Y L LP
Sbjct: 1229 FYVLQKSGPNNYELDLP 1238

[Close]

BLAST of Cmc06g0165871 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-35
Identity = 89/257 (34.63%), Postives = 136/257 (52.92%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            ++D D  FTS+ W+         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAI 180
              H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGP 240
            Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALP 256
            F +L++ GP  Y L LP
Sbjct: 1229 FYVLQKSGPNNYELDLP 1238

[Close]

BLAST of Cmc06g0165871 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-35
Identity = 89/257 (34.63%), Postives = 136/257 (52.92%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            ++D D  FTS+ W+         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAI 180
              H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGP 240
            Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALP 256
            F +L++ GP  Y L LP
Sbjct: 1229 FYVLQKSGPNNYELDLP 1238

[Close]

BLAST of Cmc06g0165871 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-35
Identity = 89/257 (34.63%), Postives = 136/257 (52.92%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            ++D D  FTS+ W+         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAI 180
              H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  QKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGP 240
            Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALP 256
            F +L++ GP  Y L LP
Sbjct: 1229 FYVLQKSGPNNYELDLP 1238

[Close]

BLAST of Cmc06g0165871 vs. ExPASy TrEMBL
Match: A0A5A7TP01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00070 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.0e-145
Identity = 257/260 (98.85%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1191 MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1250

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1251 VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1310

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1311 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1370

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE
Sbjct: 1371 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 1430

Query: 241  ILERIGPVAYRLALPHPLSS 261
            ILERIGPVAYRLALP  LS+
Sbjct: 1431 ILERIGPVAYRLALPPSLSA 1450

[Close]

BLAST of Cmc06g0165871 vs. ExPASy TrEMBL
Match: A0A5A7SSL3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00540 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 3.7e-143
Identity = 251/255 (98.43%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            +SDRDARFTSKFW+GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1325

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFE
Sbjct: 1326 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1385

Query: 241  ILERIGPVAYRLALP 256
            ILERIGPVAYRLALP
Sbjct: 1386 ILERIGPVAYRLALP 1400

[Close]

BLAST of Cmc06g0165871 vs. ExPASy TrEMBL
Match: A0A5D3BTN0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001560 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 4.8e-143
Identity = 251/255 (98.43%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1511 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1570

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            VSDRDARFTSKFW+GLQ+ALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1571 VSDRDARFTSKFWKGLQIALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1630

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1631 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1690

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFE
Sbjct: 1691 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1750

Query: 241  ILERIGPVAYRLALP 256
            ILERIGPVAYRLALP
Sbjct: 1751 ILERIGPVAYRLALP 1765

[Close]

BLAST of Cmc06g0165871 vs. ExPASy TrEMBL
Match: A0A5A7SIJ5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003210 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 4.8e-143
Identity = 251/255 (98.43%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1174 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1233

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            VSDRDARFTSKFW+GLQ+ALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1234 VSDRDARFTSKFWKGLQIALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1293

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1294 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1353

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFE
Sbjct: 1354 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1413

Query: 241  ILERIGPVAYRLALP 256
            ILERIGPVAYRLALP
Sbjct: 1414 ILERIGPVAYRLALP 1428

[Close]

BLAST of Cmc06g0165871 vs. ExPASy TrEMBL
Match: A0A5A7U6G5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00090 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 4.8e-143
Identity = 251/255 (98.43%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRLTKTAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDRLTK+AHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1154 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1213

Query: 61   VSDRDARFTSKFWQGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 120
            VSDRDARFTSKFW+GLQ+ALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1214 VSDRDARFTSKFWKGLQIALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1273

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ
Sbjct: 1274 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQ 1333

Query: 181  KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFE 240
            KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFE
Sbjct: 1334 KIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFE 1393

Query: 241  ILERIGPVAYRLALP 256
            ILERIGPVAYRLALP
Sbjct: 1394 ILERIGPVAYRLALP 1408

The following BLAST results are available for this feature:

BLAST of Cmc06g0165871 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025917.1	2.1e-145	98.85	pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo v...	[more]
KAA0032541.1	7.6e-143	98.43	pol protein [Cucumis melo var. makuwa]	[more]
TYK20443.1	1.0e-142	98.43	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025998.1	1.0e-142	98.43	pol protein [Cucumis melo var. makuwa]	[more]
TYK01576.1	1.0e-142	98.43	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0165871 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	7.2e-35	34.63	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	7.2e-35	34.63	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	7.2e-35	34.63	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	7.2e-35	34.63	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	7.2e-35	34.63	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0165871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TP01	1.0e-145	98.85	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14...	[more]
A0A5A7SSL3	3.7e-143	98.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A5D3BTN0	4.8e-143	98.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7SIJ5	4.8e-143	98.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7U6G5	4.8e-143	98.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40...	[more]

BLAST of Cmc06g0165871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..192 e-value: 2.2E-43 score: 149.9
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 10..149
None	No IPR available	PANTHER	PTHR46148:SF39	SUBFAMILY NOT NAMED	coord: 10..149
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 18.598045
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0165871.1	Cmc06g0165871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding