Cmc06g0165571 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0165571
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 17472482 .. 17472982 (+)
RNA-Seq Expression	Cmc06g0165571
Synteny	Cmc06g0165571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTATTACGGGACTGCCCAAGACCCTAAAGGGCTATACGGTGATCTGGGTTGTTGTCGACAGACACACGAAGTCGGCCCATTTCGTGCCAGGGAAATCCACTTACACTGCCAGTAAGTGGGGGCAGTTATATATGACAGAGATTGTGAGACTACATGGAGTACCCGTATCCATCATTTCAGACAGAGACGCTCGTTTCACATCGAAGTTCTGGAAAGGACTTCAACTTGCATTAGGTACGAGGTTGGACTTCAGCACGACATTCCACCCTCAGACTGATGGTCAGACAGAGAGAGTGAACCAGATTTTGGAAGATATGCTGCGGGCCTGCGTGCTAGAGTTTTCAGGAAGTTGGGACTCTCATCTGCATCTGATGGAGTTTGCCTATAATAACAGCTACCAGGCTACTATCAGTATGGCACCGTTCGAGGCTCTGTATGGCAAGTGCTGTAGATCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAG

mRNA sequence

ATGGATTTTATTACGGGACTGCCCAAGACCCTAAAGGGCTATACGGTGATCTGGGTTGTTGTCGACAGACACACGAAGTCGGCCCATTTCGTGCCAGGGAAATCCACTTACACTGCCAGTAAGTGGGGGCAGTTATATATGACAGAGATTGTGAGACTACATGGAGTACCCGTATCCATCATTTCAGACAGAGACGCTCGTTTCACATCGAAGTTCTGGAAAGGACTTCAACTTGCATTAGGTACGAGGTTGGACTTCAGCACGACATTCCACCCTCAGACTGATGGTCAGACAGAGAGAGTGAACCAGATTTTGGAAGATATGCTGCGGGCCTGCGTGCTAGAGTTTTCAGGAAGTTGGGACTCTCATCTGCATCTGATGGAGTTTGCCTATAATAACAGCTACCAGGCTACTATCAGTATGGCACCGTTCGAGGCTCTGTATGGCAAGTGCTGTAGATCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAG

Coding sequence (CDS)

ATGGATTTTATTACGGGACTGCCCAAGACCCTAAAGGGCTATACGGTGATCTGGGTTGTTGTCGACAGACACACGAAGTCGGCCCATTTCGTGCCAGGGAAATCCACTTACACTGCCAGTAAGTGGGGGCAGTTATATATGACAGAGATTGTGAGACTACATGGAGTACCCGTATCCATCATTTCAGACAGAGACGCTCGTTTCACATCGAAGTTCTGGAAAGGACTTCAACTTGCATTAGGTACGAGGTTGGACTTCAGCACGACATTCCACCCTCAGACTGATGGTCAGACAGAGAGAGTGAACCAGATTTTGGAAGATATGCTGCGGGCCTGCGTGCTAGAGTTTTCAGGAAGTTGGGACTCTCATCTGCATCTGATGGAGTTTGCCTATAATAACAGCTACCAGGCTACTATCAGTATGGCACCGTTCGAGGCTCTGTATGGCAAGTGCTGTAGATCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAG

Protein sequence

MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATISMAPFEALYGKCCRSLSAGARLESRGC

Homology

[Close]

BLAST of Cmc06g0165571 vs. NCBI nr
Match: KAA0032248.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 7.4e-83
Identity = 150/155 (96.77%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 958  MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1017

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            ISDRDARFTSKFWKGLQLALGTRLDF+T FHPQTDGQTER+NQILEDMLRACVLEFSGSW
Sbjct: 1018 ISDRDARFTSKFWKGLQLALGTRLDFNTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1077

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRSL 156
            DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRSL
Sbjct: 1078 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSL 1112

[Close]

BLAST of Cmc06g0165571 vs. NCBI nr
Match: KAA0040542.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.0 bits (811), Expect = 9.6e-83
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 907  MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 966

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            ISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER+NQILEDMLRACVLEFSGSW
Sbjct: 967  ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1026

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRS 155
            DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRS
Sbjct: 1027 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRS 1060

[Close]

BLAST of Cmc06g0165571 vs. NCBI nr
Match: KAA0032541.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.0 bits (811), Expect = 9.6e-83
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            ISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER+NQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRS 155
            DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRS
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRS 1299

[Close]

BLAST of Cmc06g0165571 vs. NCBI nr
Match: KAA0063083.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.0 bits (811), Expect = 9.6e-83
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
           MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 110 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 169

Query: 61  ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
           ISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER+NQILEDMLRACVLEFSGSW
Sbjct: 170 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 229

Query: 121 DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRS 155
           DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRS
Sbjct: 230 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRS 263

[Close]

BLAST of Cmc06g0165571 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQ ER+NQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQIERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRS 155
            DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRS
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRS 1299

[Close]

BLAST of Cmc06g0165571 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            I+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc06g0165571 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            I+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc06g0165571 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            I+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc06g0165571 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            I+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc06g0165571 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFIT LP++  GY  ++VVVDR +K A  VP   + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            I+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc06g0165571 vs. ExPASy TrEMBL
Match: A0A5A7SNR3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00790 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.6e-83
Identity = 150/155 (96.77%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 958  MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1017

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            ISDRDARFTSKFWKGLQLALGTRLDF+T FHPQTDGQTER+NQILEDMLRACVLEFSGSW
Sbjct: 1018 ISDRDARFTSKFWKGLQLALGTRLDFNTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1077

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRSL 156
            DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRSL
Sbjct: 1078 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSL 1112

[Close]

BLAST of Cmc06g0165571 vs. ExPASy TrEMBL
Match: A0A5A7SSL3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00540 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.7e-83
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            ISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER+NQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRS 155
            DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRS
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRS 1299

[Close]

BLAST of Cmc06g0165571 vs. ExPASy TrEMBL
Match: A0A5A7TAT0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00960 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.7e-83
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 907  MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 966

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            ISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER+NQILEDMLRACVLEFSGSW
Sbjct: 967  ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1026

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRS 155
            DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRS
Sbjct: 1027 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRS 1060

[Close]

BLAST of Cmc06g0165571 vs. ExPASy TrEMBL
Match: A0A5A7V4U5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14343G00020 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.7e-83
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
           MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 110 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 169

Query: 61  ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
           ISDRDARFTSKFWKGLQLALGTRLDFST FHPQTDGQTER+NQILEDMLRACVLEFSGSW
Sbjct: 170 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 229

Query: 121 DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRS 155
           DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRS
Sbjct: 230 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRS 263

[Close]

BLAST of Cmc06g0165571 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.1e-83
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVVVDRHTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 60
            MDFITGLPKTLKGYTVIWVVVDR TKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQTERVNQILEDMLRACVLEFSGSW 120
            ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQ ER+NQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTTFHPQTDGQIERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYGKCCRS 155
            DSHLHLMEFAYNNSYQATI MAPFEALYGKCCRS
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRS 1299

The following BLAST results are available for this feature:

BLAST of Cmc06g0165571 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032248.1	7.4e-83	96.77	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040542.1	9.6e-83	97.40	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0032541.1	9.6e-83	97.40	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063083.1	9.6e-83	97.40	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	1.3e-82	97.40	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0165571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.9e-25	38.51	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.9e-25	38.51	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.9e-25	38.51	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.9e-25	38.51	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.9e-25	38.51	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0165571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNR3	3.6e-83	96.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7SSL3	4.7e-83	97.40	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A5A7TAT0	4.7e-83	97.40	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V4U5	4.7e-83	97.40	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14343G00020 ...	[more]
A0A5A7V4E4	6.1e-83	97.40	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]

BLAST of Cmc06g0165571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..162 e-value: 8.1E-42 score: 144.8
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 9..149
None	No IPR available	PANTHER	PTHR46148:SF39	SUBFAMILY NOT NAMED	coord: 9..149
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 17.506863
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0165571.1	Cmc06g0165571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding