Cmc06g0165201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0165201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 16598852 .. 16599208 (+)
RNA-Seq Expression	Cmc06g0165201
Synteny	Cmc06g0165201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCACCGTGGGGAGCACCAGTGCTTTTTGTGAAAAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAAGGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAAACAGCATTAAGAACGAGGTATGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAA

mRNA sequence

ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCACCGTGGGGAGCACCAGTGCTTTTTGTGAAAAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAAGGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAAACAGCATTAAGAACGAGGTATGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAA

Coding sequence (CDS)

ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCACCGTGGGGAGCACCAGTGCTTTTTGTGAAAAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAAGGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAAACAGCATTAAGAACGAGGTATGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAA

Protein sequence

MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFELCHSV

Homology

[Close]

BLAST of Cmc06g0165201 vs. NCBI nr
Match: TYK27290.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 594 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 653

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 654 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 707

[Close]

BLAST of Cmc06g0165201 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 665 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 725 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 778

[Close]

BLAST of Cmc06g0165201 vs. NCBI nr
Match: TYK06334.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 627 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 686

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 687 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 740

[Close]

BLAST of Cmc06g0165201 vs. NCBI nr
Match: KAA0037582.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 249 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 308

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 309 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 362

[Close]

BLAST of Cmc06g0165201 vs. NCBI nr
Match: TYK27507.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 627 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 686

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 687 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 740

[Close]

BLAST of Cmc06g0165201 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 7   KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRI 66
           +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRT-----RYGIMSFELCHS 118
           D+L  ++  A +F+ +DL SGYHQ+ +   D  KTA  T      Y +M F L ++
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNA 725

[Close]

BLAST of Cmc06g0165201 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 7   KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRI 66
           +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRT-----RYGIMSFELCHS 118
           D+L  ++  A +F+ +DL SGYHQ+ +   D  KTA  T      Y +M F L ++
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNA 751

[Close]

BLAST of Cmc06g0165201 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-19
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 42  TLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKT 101
           +LR+CIDYR L KVTI+NKYP+PR+DDLFD+L  A  F+K+DLRSGY Q+++ + D  KT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 ALRTRYGIMSFEL 115
              TRYG   F +
Sbjct: 65  TCVTRYGSFEFRV 77

[Close]

BLAST of Cmc06g0165201 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-19
Identity = 42/112 (37.50%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           + P +++ +  ++ + +  G IR S +    PV+FV KK+GTLR+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSF 113
           YPLP I+ L  +++G+ +F+K+DL+S YH ++VR+ D  K A R   G+  +
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEY 531

[Close]

BLAST of Cmc06g0165201 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-19
Identity = 42/112 (37.50%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           + P +++ +  ++ + +  G IR S +    PV+FV KK+GTLR+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSF 113
           YPLP I+ L  +++G+ +F+K+DL+S YH ++VR+ D  K A R   G+  +
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEY 531

[Close]

BLAST of Cmc06g0165201 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 627 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 686

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 687 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 740

[Close]

BLAST of Cmc06g0165201 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 665 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 725 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 778

[Close]

BLAST of Cmc06g0165201 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 665 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 725 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 778

[Close]

BLAST of Cmc06g0165201 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 665 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 725 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 778

[Close]

BLAST of Cmc06g0165201 vs. ExPASy TrEMBL
Match: A0A5A7UUL6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00090 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 60
           MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK
Sbjct: 297 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 356

Query: 61  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTALRTRYGIMSFEL 115
           YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTA RTRYG   F +
Sbjct: 357 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 410

The following BLAST results are available for this feature:

BLAST of Cmc06g0165201 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27290.1	2.3e-54	94.74	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	2.3e-54	94.74	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]
TYK06334.1	2.3e-54	94.74	putative polyprotein [Cucumis melo var. makuwa]	[more]
KAA0037582.1	2.3e-54	94.74	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK27507.1	2.3e-54	94.74	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0165201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.3e-23	45.69	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.3e-23	45.69	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P31843	2.5e-19	57.53	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q9UR07	3.3e-19	37.50	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	3.3e-19	37.50	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc06g0165201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2V7	1.1e-54	94.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	1.1e-54	94.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	1.1e-54	94.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	1.1e-54	94.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]
A0A5A7UUL6	1.1e-54	94.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc06g0165201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..114 e-value: 5.5E-47 score: 161.8
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 4..112
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..118 e-value: 1.89857E-47 score: 148.512
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..88 e-value: 5.5E-47 score: 161.8
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..106 e-value: 4.0E-7 score: 29.8
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 4..112
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0165201.1	Cmc06g0165201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding