Cmc06g0164361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0164361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 14849438 .. 14850061 (+)
RNA-Seq Expression	Cmc06g0164361
Synteny	Cmc06g0164361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTTAATTTCAAATATTTCCAAGAATTGTTTGGTTAGAGGTCTTCCTAATTTTAAATTTGAAAAAGATAAAGTTTGTGATGCTTGTCAAATGGGTAAGCAAACCAAGTCCTCTTTCAAATCTAAAAATGTGATCTCTACTTCTAGACCCCTACAACTATTATACATGGACTTATTTGGCCCTTCTAGAATTACTAGCTATGGAGGAAATTATTATGCGTTTGTGATAGTTGATGATTTTTCTAGATTTACTTGGGTTTTGATGATAAAACGTAAGGATGATGCTTTGAAAAGTTTTATTACTTTTGCAAAAAGAGTTCAAAATCAAAAAGGATTTTTCATTTCTAAAATTAGGAGTGATCATGGAGGAGAATTTGATAATGTTGTTTTTAAAGCTTTTTGTGAAGAAAATGGTTTTTCTCATGATTTTTCCTCTCCAAGAACTCCTCAACAAAATGGTGTGGCTGAAAGGAAAAATCGTACTTTGCAAGAATTTGCTAGATTGATGTTGAACGAGTATGGTTTACCTAAATATTTTTGGGTGAAAGCTGTTAACACCGCTTGTTATGTTTTAAATAGAGTTTTAGTTAGGTCCTCTTTAGATAATACTCTTGAACTTTAG

mRNA sequence

ATGCACTTAATTTCAAATATTTCCAAGAATTGTTTGGTTAGAGGTCTTCCTAATTTTAAATTTGAAAAAGATAAAGTTTGTGATGCTTGTCAAATGGGTAAGCAAACCAAGTCCTCTTTCAAATCTAAAAATGTGATCTCTACTTCTAGACCCCTACAACTATTATACATGGACTTATTTGGCCCTTCTAGAATTACTAGCTATGGAGGAAATTATTATGCGTTTGTGATAGTTGATGATTTTTCTAGATTTACTTGGGTTTTGATGATAAAACGTAAGGATGATGCTTTGAAAAGTTTTATTACTTTTGCAAAAAGAGTTCAAAATCAAAAAGGATTTTTCATTTCTAAAATTAGGAGTGATCATGGAGGAGAATTTGATAATGTTGTTTTTAAAGCTTTTTGTGAAGAAAATGGTTTTTCTCATGATTTTTCCTCTCCAAGAACTCCTCAACAAAATGGTGTGGCTGAAAGGAAAAATCGTACTTTGCAAGAATTTGCTAGATTGATGTTGAACGAGTATGGTTTACCTAAATATTTTTGGGTGAAAGCTGTTAACACCGCTTGTTATGTTTTAAATAGAGTTTTAGTTAGGTCCTCTTTAGATAATACTCTTGAACTTTAG

Coding sequence (CDS)

ATGCACTTAATTTCAAATATTTCCAAGAATTGTTTGGTTAGAGGTCTTCCTAATTTTAAATTTGAAAAAGATAAAGTTTGTGATGCTTGTCAAATGGGTAAGCAAACCAAGTCCTCTTTCAAATCTAAAAATGTGATCTCTACTTCTAGACCCCTACAACTATTATACATGGACTTATTTGGCCCTTCTAGAATTACTAGCTATGGAGGAAATTATTATGCGTTTGTGATAGTTGATGATTTTTCTAGATTTACTTGGGTTTTGATGATAAAACGTAAGGATGATGCTTTGAAAAGTTTTATTACTTTTGCAAAAAGAGTTCAAAATCAAAAAGGATTTTTCATTTCTAAAATTAGGAGTGATCATGGAGGAGAATTTGATAATGTTGTTTTTAAAGCTTTTTGTGAAGAAAATGGTTTTTCTCATGATTTTTCCTCTCCAAGAACTCCTCAACAAAATGGTGTGGCTGAAAGGAAAAATCGTACTTTGCAAGAATTTGCTAGATTGATGTTGAACGAGTATGGTTTACCTAAATATTTTTGGGTGAAAGCTGTTAACACCGCTTGTTATGTTTTAAATAGAGTTTTAGTTAGGTCCTCTTTAGATAATACTCTTGAACTTTAG

Protein sequence

MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLFGPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRSDHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYFWVKAVNTACYVLNRVLVRSSLDNTLEL

Homology

[Close]

BLAST of Cmc06g0164361 vs. NCBI nr
Match: AOZ57168.1 (integrase, partial [Coccinia grandis])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 168/190 (88.42%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
           MHLISNISKN LVRGLP FKFEKDKVCDACQMGKQTKSSFKSKNVIST+RPLQLL+MDLF
Sbjct: 28  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNVISTTRPLQLLHMDLF 87

Query: 61  GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
           GPSRI S+GGNYYAFVIVDDFSRFTWVLMIK KD+ALK+FI+F KRVQN+KGFFISKIRS
Sbjct: 88  GPSRIASFGGNYYAFVIVDDFSRFTWVLMIKHKDEALKNFISFTKRVQNEKGFFISKIRS 147

Query: 121 DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
           DHGGEFDN  FK FCEENGFSH+FSSPRTPQQNGV ERKNRTLQEFAR ML+EYGLPKYF
Sbjct: 148 DHGGEFDNDAFKDFCEENGFSHNFSSPRTPQQNGVVERKNRTLQEFARSMLHEYGLPKYF 207

Query: 181 WVKAVNTACY 191
           W +AVNTA Y
Sbjct: 208 WAEAVNTAXY 217

[Close]

BLAST of Cmc06g0164361 vs. NCBI nr
Match: XP_024024455.1 (uncharacterized protein LOC112092461 [Morus notabilis])

HSP 1 Score: 301.2 bits (770), Expect = 6.8e-78
Identity = 137/204 (67.16%), Postives = 169/204 (82.84%), Query Frame = 0


Query: 1   MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
           MHL+S +S+  +VRGLPN  F+KDK+CDACQ GKQ ++SFKS   IST+RPLQLL+MDLF
Sbjct: 588 MHLLSKLSRKEVVRGLPNLPFQKDKICDACQFGKQVRTSFKSILEISTTRPLQLLHMDLF 647

Query: 61  GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
           GPSR TS GG +YAFVIVDDFSR+TWV+ +  KD+ALK+F+ F KRVQN++G+ I+ I+S
Sbjct: 648 GPSRTTSLGGKHYAFVIVDDFSRYTWVIFLATKDEALKTFLYFCKRVQNEQGYLITTIKS 707

Query: 121 DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
           DHGGEFDN  F+  C ENG+ H+FS+PRTPQQNGV ERKNR LQE AR MLNE GLPKYF
Sbjct: 708 DHGGEFDNDAFETLCNENGYKHNFSTPRTPQQNGVVERKNRILQEMARSMLNENGLPKYF 767

Query: 181 WVKAVNTACYVLNRVLVRSSLDNT 205
           W +AVNT+CY++NRVL+R  +D T
Sbjct: 768 WAEAVNTSCYIVNRVLIRPKMDKT 791

[Close]

BLAST of Cmc06g0164361 vs. NCBI nr
Match: XP_042983398.1 (uncharacterized protein LOC122312814, partial [Carya illinoinensis])

HSP 1 Score: 288.5 bits (737), Expect = 4.6e-74
Identity = 136/204 (66.67%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 1   MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
           M LIS +SKN LVRGLP   F KDK+CDACQ GKQTK+SFK+K  IST+RPLQL++MDLF
Sbjct: 339 MELISKLSKNDLVRGLPKTYFLKDKICDACQFGKQTKTSFKTKKHISTTRPLQLIHMDLF 398

Query: 61  GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
           GP+R+ S GG YYAFVIVDDFSR+TWV+ +  KD+A  +F    KR+QN+KG+ IS IRS
Sbjct: 399 GPNRVASLGGKYYAFVIVDDFSRYTWVIFLAHKDEAHNAFTKLCKRIQNEKGYTISSIRS 458

Query: 121 DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
           D G EF N   + FC+ENGF H+FS+PRTPQQNGV ERKNR+LQE AR MLNE  LP YF
Sbjct: 459 DRGKEFVNKNIETFCDENGFIHNFSAPRTPQQNGVVERKNRSLQEMARTMLNENNLPSYF 518

Query: 181 WVKAVNTACYVLNRVLVRSSLDNT 205
           W +AV+TACYV+NRV++RS LD T
Sbjct: 519 WAEAVSTACYVINRVMLRSKLDKT 542

[Close]

BLAST of Cmc06g0164361 vs. NCBI nr
Match: XP_042983258.1 (uncharacterized protein LOC122312662, partial [Carya illinoinensis])

HSP 1 Score: 288.5 bits (737), Expect = 4.6e-74
Identity = 136/204 (66.67%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 1   MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
           M LIS +SKN LVRGLP   F KDK+CDACQ GKQTK+SFK+K  IST+RPLQL++MDLF
Sbjct: 339 MELISKLSKNDLVRGLPKTYFLKDKICDACQFGKQTKTSFKTKKHISTTRPLQLIHMDLF 398

Query: 61  GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
           GP+R+ S GG YYAFVIVDDFSR+TWV+ +  KD+A  +F    KR+QN+KG+ IS IRS
Sbjct: 399 GPNRVASLGGKYYAFVIVDDFSRYTWVIFLAHKDEAHNAFTKLCKRIQNEKGYTISSIRS 458

Query: 121 DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
           D G EF N   + FC+ENGF H+FS+PRTPQQNGV ERKNR+LQE AR MLNE  LP YF
Sbjct: 459 DRGKEFVNKNIETFCDENGFIHNFSAPRTPQQNGVVERKNRSLQEMARTMLNENNLPSYF 518

Query: 181 WVKAVNTACYVLNRVLVRSSLDNT 205
           W +AV+TACYV+NRV++RS LD T
Sbjct: 519 WAEAVSTACYVINRVMLRSKLDKT 542

[Close]

BLAST of Cmc06g0164361 vs. NCBI nr
Match: XP_042953597.1 (uncharacterized protein LOC122290115, partial [Carya illinoinensis])

HSP 1 Score: 288.5 bits (737), Expect = 4.6e-74
Identity = 136/204 (66.67%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 1   MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
           M LIS +SKN LVRGLP   F KDK+CDACQ GKQTK+SFK+K  IST+RPLQL++MDLF
Sbjct: 339 MELISKLSKNDLVRGLPKTYFLKDKICDACQFGKQTKTSFKTKKHISTTRPLQLIHMDLF 398

Query: 61  GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
           GP+R+ S GG YYAFVIVDDFSR+TWV+ +  KD+A  +F    KR+QN+KG+ IS IRS
Sbjct: 399 GPNRVASLGGKYYAFVIVDDFSRYTWVIFLTHKDEAHNAFTKLCKRIQNEKGYTISSIRS 458

Query: 121 DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
           D G EF N   + FC+ENGF H+FS+PRTPQQNGV ERKNR+LQE AR MLNE  LP YF
Sbjct: 459 DRGKEFVNKNIETFCDENGFIHNFSAPRTPQQNGVVERKNRSLQEMARTMLNENNLPSYF 518

Query: 181 WVKAVNTACYVLNRVLVRSSLDNT 205
           W +AV+TACYV+NRV++RS LD T
Sbjct: 519 WAEAVSTACYVINRVMLRSKLDKT 542

[Close]

BLAST of Cmc06g0164361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 74/170 (43.53%), Postives = 102/170 (60.00%), Query Frame = 0


Query: 25  KVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLFGPSRITSYGGNYYAFVIVDDFSRF 84
           K CD C  GKQ + SF++ +    +  L L+Y D+ GP  I S GGN Y    +DD SR 
Sbjct: 455 KPCDYCLFGKQHRVSFQTSSERKLN-ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRK 514

Query: 85  TWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRSDHGGEFDNVVFKAFCEENGFSHDF 144
            WV ++K KD   + F  F   V+ + G  + ++RSD+GGE+ +  F+ +C  +G  H+ 
Sbjct: 515 LWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEK 574

Query: 145 SSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYFWVKAVNTACYVLNR 195
           + P TPQ NGVAER NRT+ E  R ML    LPK FW +AV TACY++NR
Sbjct: 575 TVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINR 623

[Close]

BLAST of Cmc06g0164361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-24
Identity = 68/193 (35.23%), Postives = 109/193 (56.48%), Query Frame = 0


Query: 3   LISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLFGP 62
           +ISN S + L    P+ KF     C  C + K  K  F S++ I+++RPL+ +Y D++  
Sbjct: 482 VISNYSLSVL---NPSHKFLS---CSDCLINKSNKVPF-SQSTINSTRPLEYIYSDVWS- 541

Query: 63  SRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRSDH 122
           S I S+    Y  + VD F+R+TW+  +K+K    ++FITF   ++N+    I    SD+
Sbjct: 542 SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDN 601

Query: 123 GGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYFWV 182
           GGEF  V    +  ++G SH  S P TP+ NG++ERK+R + E    +L+   +PK +W 
Sbjct: 602 GGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWP 661

Query: 183 KAVNTACYVLNRV 196
            A   A Y++NR+
Sbjct: 662 YAFAVAVYLINRL 664

[Close]

BLAST of Cmc06g0164361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-24
Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 27  CDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLFGPSRITSYGGNYYAFVIVDDFSRFTW 86
           C  C + K  K  F S + I++S+PL+ +Y D++  S I S     Y  + VD F+R+TW
Sbjct: 479 CSDCFINKSHKVPF-SNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTW 538

Query: 87  VLMIKRKDDALKSFITFAKRVQNQKGFFISKIRSDHGGEFDNVVFKAFCEENGFSHDFSS 146
           +  +K+K     +FI F   V+N+    I  + SD+GGEF  VV + +  ++G SH  S 
Sbjct: 539 LYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSP 598

Query: 147 PRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYFWVKAVNTACYVLNRV 196
           P TP+ NG++ERK+R + E    +L+   +PK +W  A + A Y++NR+
Sbjct: 599 PHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRL 643

[Close]

BLAST of Cmc06g0164361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 106.3 bits (264), Expect = 4.2e-22
Identity = 59/181 (32.60%), Postives = 96/181 (53.04%), Query Frame = 0


Query: 25  KVCDACQMGKQTKSSFKS-KNVISTSRPLQLLYMDLFGPSRITSYGGNYYAFVIVDDFSR 84
           ++C+ C  GKQ +  FK  K+     RPL +++ D+ GP    +     Y  + VD F+ 
Sbjct: 453 EICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTH 512

Query: 85  FTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRSDHGGEFDNVVFKAFCEENGFSHD 144
           +    +IK K D    F  F  + +      +  +  D+G E+ +   + FC + G S+ 
Sbjct: 513 YCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYH 572

Query: 145 FSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYFWVKAVNTACYVLNRVLVRSSLDN 204
            + P TPQ NGV+ER  RT+ E AR M++   L K FW +AV TA Y++NR+  R+ +D+
Sbjct: 573 LTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDS 632

[Close]

BLAST of Cmc06g0164361 vs. ExPASy Swiss-Prot
Match: P04026 (Intracisternal A-particle Pol-related polyprotein (Fragment) OS=Hamster intracisternal a-particle H18 OX=11752 GN=pol PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.8e-04
Identity = 31/117 (26.50%), Postives = 55/117 (47.01%), Query Frame = 0


Query: 50  RPLQLLYMDLFGPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQN 109
           RPLQ+  MD+   + I S+G   Y  V VD  S   +   +  +    K+       ++ 
Sbjct: 599 RPLQMWQMDV---THIPSFGRLQYVHVSVDTCSGVMFATPLTGE----KASYVIQHCLEA 658

Query: 110 QKGFFISKIRSDHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEF 167
              +   +I++D+G  + +  F+ FC +   +H    P  PQ  G+ ER +RTL+ +
Sbjct: 659 WSAWGKPRIKTDNGPAYTSQKFRQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKSY 708

[Close]

BLAST of Cmc06g0164361 vs. ExPASy TrEMBL
Match: A0A1I9RYX3 (Integrase (Fragment) OS=Coccinia grandis OX=387127 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.2e-93
Identity = 168/190 (88.42%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
           MHLISNISKN LVRGLP FKFEKDKVCDACQMGKQTKSSFKSKNVIST+RPLQLL+MDLF
Sbjct: 28  MHLISNISKNSLVRGLPKFKFEKDKVCDACQMGKQTKSSFKSKNVISTTRPLQLLHMDLF 87

Query: 61  GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
           GPSRI S+GGNYYAFVIVDDFSRFTWVLMIK KD+ALK+FI+F KRVQN+KGFFISKIRS
Sbjct: 88  GPSRIASFGGNYYAFVIVDDFSRFTWVLMIKHKDEALKNFISFTKRVQNEKGFFISKIRS 147

Query: 121 DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
           DHGGEFDN  FK FCEENGFSH+FSSPRTPQQNGV ERKNRTLQEFAR ML+EYGLPKYF
Sbjct: 148 DHGGEFDNDAFKDFCEENGFSHNFSSPRTPQQNGVVERKNRTLQEFARSMLHEYGLPKYF 207

Query: 181 WVKAVNTACY 191
           W +AVNTA Y
Sbjct: 208 WAEAVNTAXY 217

[Close]

BLAST of Cmc06g0164361 vs. ExPASy TrEMBL
Match: A5BSC1 (Uncharacterized protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_030567 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 133/204 (65.20%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 1    MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
            M LIS ++K+ LVRGLP   F+KDK+C+ACQMGKQ K+SFK+KN ISTSRPL+LL+MDLF
Sbjct: 1044 MDLISQLNKDELVRGLPKINFQKDKICEACQMGKQIKNSFKNKNFISTSRPLELLHMDLF 1103

Query: 61   GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
            GPSR  S GG  YA+VIVDDFSR+TWVL + +K +A   F  F  +VQN+KGF I+ IRS
Sbjct: 1104 GPSRTPSLGGKSYAYVIVDDFSRYTWVLFLSQKSEAFYEFSKFCNKVQNEKGFSITCIRS 1163

Query: 121  DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
            DHG EF+N  F+ +C ++G +H+FS+PRTPQQNGV ERKNRTLQE AR MLNE  LPKYF
Sbjct: 1164 DHGREFENFDFEEYCNKHGINHNFSAPRTPQQNGVVERKNRTLQEMARTMLNENNLPKYF 1223

Query: 181  WVKAVNTACYVLNRVLVRSSLDNT 205
            W +AVNT+CYVLNR+L+R  L  T
Sbjct: 1224 WAEAVNTSCYVLNRILLRPILKKT 1247

[Close]

BLAST of Cmc06g0164361 vs. ExPASy TrEMBL
Match: A0A438GI90 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2030 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 133/204 (65.20%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 1   MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
           M LIS ++K+ LVRGLP   F+KDK+C+ACQMGKQ K+SFK+KN ISTSRPL+LL+MDLF
Sbjct: 183 MDLISQLNKDELVRGLPKINFQKDKICEACQMGKQIKNSFKNKNFISTSRPLELLHMDLF 242

Query: 61  GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
           GPSR  S GG  YA+VIVDDFSR+TWVL + +K +A   F  F  +VQN+KGF I+ IRS
Sbjct: 243 GPSRTPSLGGKSYAYVIVDDFSRYTWVLFLSQKSEAFYEFSKFCNKVQNEKGFSITCIRS 302

Query: 121 DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
           DHG EF+N  F+ +C ++G +H+FS+PRTPQQNGV ERKNRTLQE AR MLNE  LPKYF
Sbjct: 303 DHGREFENFDFEEYCNKHGINHNFSAPRTPQQNGVVERKNRTLQEMARTMLNENNLPKYF 362

Query: 181 WVKAVNTACYVLNRVLVRSSLDNT 205
           W +AVNT+CYVLNR+L+R  L  T
Sbjct: 363 WAEAVNTSCYVLNRILLRPILKKT 386

[Close]

BLAST of Cmc06g0164361 vs. ExPASy TrEMBL
Match: A0A438DJX8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2657 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 133/204 (65.20%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 1   MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
           M LIS ++K+ LVRGLP   F+KDK+C+ACQMGKQ K+SFK+KN ISTSRPL+LL+MDLF
Sbjct: 183 MDLISQLNKDELVRGLPKINFQKDKICEACQMGKQIKNSFKNKNFISTSRPLELLHMDLF 242

Query: 61  GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
           GPSR  S GG  YA+VIVDDFSR+TWVL + +K +A   F  F  +VQN+KGF I+ IRS
Sbjct: 243 GPSRTPSLGGKSYAYVIVDDFSRYTWVLFLSQKSEAFYEFSKFCNKVQNEKGFSITCIRS 302

Query: 121 DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
           DHG EF+N  F+ +C ++G +H+FS+PRTPQQNGV ERKNRTLQE AR MLNE  LPKYF
Sbjct: 303 DHGREFENFDFEEYCNKHGINHNFSAPRTPQQNGVVERKNRTLQEMARTMLNENNLPKYF 362

Query: 181 WVKAVNTACYVLNRVLVRSSLDNT 205
           W +AVNT+CYVLNR+L+R  L  T
Sbjct: 363 WAEAVNTSCYVLNRILLRPILKKT 386

[Close]

BLAST of Cmc06g0164361 vs. ExPASy TrEMBL
Match: A0A151RY83 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_030937 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.6e-72
Identity = 133/204 (65.20%), Postives = 161/204 (78.92%), Query Frame = 0


Query: 1   MHLISNISKNCLVRGLPNFKFEKDKVCDACQMGKQTKSSFKSKNVISTSRPLQLLYMDLF 60
           M  ++ +S+  LV GLP  KF KDK+CDACQ GKQ K+SFKSKN ISTSRPLQL++MDLF
Sbjct: 692 MDHLNKLSRKELVVGLPKLKFGKDKLCDACQKGKQVKASFKSKNQISTSRPLQLIHMDLF 751

Query: 61  GPSRITSYGGNYYAFVIVDDFSRFTWVLMIKRKDDALKSFITFAKRVQNQKGFFISKIRS 120
           GPSR  S GGNYY  VIVDD+SR+TWV+ +  K+DA  +F  FAK VQN+K   I+ IRS
Sbjct: 752 GPSRTMSLGGNYYGLVIVDDYSRYTWVMFLANKNDAFNAFRKFAKLVQNEKCSNITSIRS 811

Query: 121 DHGGEFDNVVFKAFCEENGFSHDFSSPRTPQQNGVAERKNRTLQEFARLMLNEYGLPKYF 180
           DHGGEF N++F+ FCEE+G +H+FS+PRTPQQNGV ERKNR+L+E AR MLNE  LPKYF
Sbjct: 812 DHGGEFQNIMFQKFCEEHGINHNFSAPRTPQQNGVVERKNRSLEELARTMLNETNLPKYF 871

Query: 181 WVKAVNTACYVLNRVLVRSSLDNT 205
           W  A+NTAC+VLNRVL+R  L  T
Sbjct: 872 WADAINTACHVLNRVLIRPILKKT 895

The following BLAST results are available for this feature:

BLAST of Cmc06g0164361 vs. NCBI nr


Match Name	E-value	Identity	Description
AOZ57168.1	1.3e-92	88.42	integrase, partial [Coccinia grandis]	[more]
XP_024024455.1	6.8e-78	67.16	uncharacterized protein LOC112092461 [Morus notabilis]	[more]
XP_042983398.1	4.6e-74	66.67	uncharacterized protein LOC122312814, partial [Carya illinoinensis]	[more]
XP_042983258.1	4.6e-74	66.67	uncharacterized protein LOC122312662, partial [Carya illinoinensis]	[more]
XP_042953597.1	4.6e-74	66.67	uncharacterized protein LOC122290115, partial [Carya illinoinensis]	[more]

BLAST of Cmc06g0164361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-33	43.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	2.6e-24	35.23	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.6e-24	36.09	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	4.2e-22	32.60	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P04026	6.8e-04	26.50	Intracisternal A-particle Pol-related polyprotein (Fragment) OS=Hamster intracis...	[more]

BLAST of Cmc06g0164361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1I9RYX3	6.2e-93	88.42	Integrase (Fragment) OS=Coccinia grandis OX=387127 PE=4 SV=1	[more]
A5BSC1	1.2e-72	65.20	Uncharacterized protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_030567 P...	[more]
A0A438GI90	1.2e-72	65.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438DJX8	1.2e-72	65.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A151RY83	4.6e-72	65.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]

BLAST of Cmc06g0164361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 49..150 e-value: 1.5E-15 score: 57.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 47..207 score: 22.609745
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 44..201 e-value: 2.5E-39 score: 136.5
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 21..195
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 47..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0164361.1	Cmc06g0164361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding