Cmc06g0163231 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0163231
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr06: 12466427 .. 12466765 (-)
RNA-Seq Expression	Cmc06g0163231
Synteny	Cmc06g0163231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCAAGGCTCGAGGAGGATACAAATATTTCATCAGCTTTACTGATGAATATTCTAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTAATTCTTTTGAAAAGTTCAAAAAATATAAGGGTGAACTTGAAAATGAATCAGGTAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGATTTGCGATTCCAAGACTACTTGATAGAACATGGAATTCAATCACAACTCTCTGCACCTAATACACCTCAGCAGAACGATGTATCAGAAAAAAGAAACCAAACCTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTTAG

mRNA sequence

ATGAATGTCAAGGCTCGAGGAGGATACAAATATTTCATCAGCTTTACTGATGAATATTCTAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTAATTCTTTTGAAAAGTTCAAAAAATATAAGGGTGAACTTGAAAATGAATCAGGTAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGATTTGCGATTCCAAGACTACTTGATAGAACATGGAATTCAATCACAACTCTCTGCACCTAATACACCTCAGCAGAACGATGTATCAGAAAAAAGAAACCAAACCTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTTAG

Coding sequence (CDS)

ATGAATGTCAAGGCTCGAGGAGGATACAAATATTTCATCAGCTTTACTGATGAATATTCTAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTAATTCTTTTGAAAAGTTCAAAAAATATAAGGGTGAACTTGAAAATGAATCAGGTAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGATTTGCGATTCCAAGACTACTTGATAGAACATGGAATTCAATCACAACTCTCTGCACCTAATACACCTCAGCAGAACGATGTATCAGAAAAAAGAAACCAAACCTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTTAG

Protein sequence

MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA

Homology

[Close]

BLAST of Cmc06g0163231 vs. NCBI nr
Match: KAA0054875.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ96592.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 98/111 (88.29%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MNVKARGGY+YFISF D+Y+RYGHVYLIQNKS+SFEKFK+YK E+ENESGKTIKT RSDR
Sbjct: 256 MNVKARGGYEYFISFIDDYTRYGHVYLIQNKSDSFEKFKEYKAEVENESGKTIKTFRSDR 315

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSF 112
           GGEYMDLRFQDYLIEH IQSQLSAP+TPQQN VSE+RNQTLLDMVRSMMSF
Sbjct: 316 GGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGVSERRNQTLLDMVRSMMSF 366

[Close]

BLAST of Cmc06g0163231 vs. NCBI nr
Match: KAA0040307.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK23398.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 98/112 (87.50%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MNVKARGGY+YFI+F D+YSRYGHVYLIQNKS+SFEKFK+YK E+ENESGK IKTLRSDR
Sbjct: 313 MNVKARGGYEYFINFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENESGKKIKTLRSDR 372

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           GGEYMDLRFQDYLIEHGIQSQLSAP+TPQ N VSE+RN+TLLDMVRSMMSFA
Sbjct: 373 GGEYMDLRFQDYLIEHGIQSQLSAPSTPQLNGVSERRNRTLLDMVRSMMSFA 424

[Close]

BLAST of Cmc06g0163231 vs. NCBI nr
Match: KAA0062998.1 (putative retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.8 bits (499), Expect = 9.8e-47
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MN KARGGY+YFISF D+YSRYGHVYLIQNKS+SFEKFK+YK E+ENESGKTIKTLRSDR
Sbjct: 28  MNAKARGGYEYFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDR 87

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           GGEYMDLRFQDYLI+HGI SQLSA +TPQQN VSE+RN+TLLDMVRSMMSFA
Sbjct: 88  GGEYMDLRFQDYLIDHGIPSQLSASSTPQQNGVSERRNRTLLDMVRSMMSFA 139

[Close]

BLAST of Cmc06g0163231 vs. NCBI nr
Match: KAA0037569.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK03103.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MNVKARGGYK+FI+F D+YSRY HVYLIQNKS  FEKFK+YK E+ENESGKTIKT RSDR
Sbjct: 28  MNVKARGGYKHFINFIDDYSRYDHVYLIQNKSGFFEKFKEYKAEVENESGKTIKTFRSDR 87

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           GGEYMDLRFQDYLI+HGIQSQLSAP+TPQQN VSE+RNQTLLDMVRSMMSFA
Sbjct: 88  GGEYMDLRFQDYLIKHGIQSQLSAPSTPQQNGVSERRNQTLLDMVRSMMSFA 139

[Close]

BLAST of Cmc06g0163231 vs. NCBI nr
Match: KAA0038017.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK02212.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.2e-46
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MNVKAR GY+YFISF D+YSRYGHVYLIQNKS+SFEKFK+YK ++ENESGKTIKT RSDR
Sbjct: 28  MNVKARIGYEYFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFRSDR 87

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           GGEYMDLRFQDYLIEHGIQSQLSAP+TPQQN V E+RN+TLLDMVRSMMSFA
Sbjct: 88  GGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVLERRNRTLLDMVRSMMSFA 139

[Close]

BLAST of Cmc06g0163231 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-21
Identity = 47/112 (41.96%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           M +++ GG KYF++F D+ SR   VY+++ K   F+ F+K+   +E E+G+ +K LRSD 
Sbjct: 492 MEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDN 551

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           GGEY    F++Y   HGI+ + + P TPQ N V+E+ N+T+++ VRSM+  A
Sbjct: 552 GGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMA 603

[Close]

BLAST of Cmc06g0163231 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-12
Identity = 39/104 (37.50%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 9   YKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDRGGEYMDLR 68
           Y+Y++ F D ++RY  +Y ++ KS   + F  +K  +EN     I TL SD GGE++ LR
Sbjct: 521 YRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR 580

Query: 69  FQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
             DYL +HGI    S P+TP+ N +SE++++ +++M  +++S A
Sbjct: 581 --DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHA 622

[Close]

BLAST of Cmc06g0163231 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.9e-11
Identity = 36/110 (32.73%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 3   VKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDRGG 62
           + +   Y+Y++ F D ++RY  +Y ++ KS   E F  +K  LEN     I T  SD GG
Sbjct: 536 ILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGG 595

Query: 63  EYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           E++ L   +Y  +HGI    S P+TP+ N +SE++++ +++   +++S A
Sbjct: 596 EFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 643

[Close]

BLAST of Cmc06g0163231 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 34/102 (33.33%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 11  YFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDRGGEYMDLRFQ 70
           YF+ F D+++ Y   YLI+ KS+ F  F+ +  + E      +  L  D G EY+    +
Sbjct: 502 YFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMR 561

Query: 71  DYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
            + ++ GI   L+ P+TPQ N VSE+  +T+ +  R+M+S A
Sbjct: 562 QFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGA 603

[Close]

BLAST of Cmc06g0163231 vs. ExPASy TrEMBL
Match: A0A5A7UMM9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00100 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 98/111 (88.29%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MNVKARGGY+YFISF D+Y+RYGHVYLIQNKS+SFEKFK+YK E+ENESGKTIKT RSDR
Sbjct: 256 MNVKARGGYEYFISFIDDYTRYGHVYLIQNKSDSFEKFKEYKAEVENESGKTIKTFRSDR 315

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSF 112
           GGEYMDLRFQDYLIEH IQSQLSAP+TPQQN VSE+RNQTLLDMVRSMMSF
Sbjct: 316 GGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGVSERRNQTLLDMVRSMMSF 366

[Close]

BLAST of Cmc06g0163231 vs. ExPASy TrEMBL
Match: A0A5A7TFI0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004640 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 98/112 (87.50%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MNVKARGGY+YFI+F D+YSRYGHVYLIQNKS+SFEKFK+YK E+ENESGK IKTLRSDR
Sbjct: 313 MNVKARGGYEYFINFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENESGKKIKTLRSDR 372

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           GGEYMDLRFQDYLIEHGIQSQLSAP+TPQ N VSE+RN+TLLDMVRSMMSFA
Sbjct: 373 GGEYMDLRFQDYLIEHGIQSQLSAPSTPQLNGVSERRNRTLLDMVRSMMSFA 424

[Close]

BLAST of Cmc06g0163231 vs. ExPASy TrEMBL
Match: A0A5A7V5V2 (Putative retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00990 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.7e-47
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MN KARGGY+YFISF D+YSRYGHVYLIQNKS+SFEKFK+YK E+ENESGKTIKTLRSDR
Sbjct: 28  MNAKARGGYEYFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDR 87

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           GGEYMDLRFQDYLI+HGI SQLSA +TPQQN VSE+RN+TLLDMVRSMMSFA
Sbjct: 88  GGEYMDLRFQDYLIDHGIPSQLSASSTPQQNGVSERRNRTLLDMVRSMMSFA 139

[Close]

BLAST of Cmc06g0163231 vs. ExPASy TrEMBL
Match: A0A5A7T8E8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00320 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.2e-47
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MNVKARGGYK+FI+F D+YSRY HVYLIQNKS  FEKFK+YK E+ENESGKTIKT RSDR
Sbjct: 28  MNVKARGGYKHFINFIDDYSRYDHVYLIQNKSGFFEKFKEYKAEVENESGKTIKTFRSDR 87

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           GGEYMDLRFQDYLI+HGIQSQLSAP+TPQQN VSE+RNQTLLDMVRSMMSFA
Sbjct: 88  GGEYMDLRFQDYLIKHGIQSQLSAPSTPQQNGVSERRNQTLLDMVRSMMSFA 139

[Close]

BLAST of Cmc06g0163231 vs. ExPASy TrEMBL
Match: A0A5D3BTT1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00170 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MNVKARGGYKYFISFTDEYSRYGHVYLIQNKSNSFEKFKKYKGELENESGKTIKTLRSDR 60
           MNVKAR GY+YFISF D+YSRYGHVYLIQNKS+SFEKFK+YK ++ENESGKTIKT RSDR
Sbjct: 28  MNVKARIGYEYFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAKVENESGKTIKTFRSDR 87

Query: 61  GGEYMDLRFQDYLIEHGIQSQLSAPNTPQQNDVSEKRNQTLLDMVRSMMSFA 113
           GGEYMDLRFQDYLIEHGIQSQLSAP+TPQQN V E+RN+TLLDMVRSMMSFA
Sbjct: 88  GGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVLERRNRTLLDMVRSMMSFA 139

The following BLAST results are available for this feature:

BLAST of Cmc06g0163231 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054875.1	2.6e-47	88.29	gag/pol protein [Cucumis melo var. makuwa] >TYJ96592.1 gag/pol protein [Cucumis ...	[more]
KAA0040307.1	2.6e-47	87.50	gag/pol protein [Cucumis melo var. makuwa] >TYK23398.1 gag/pol protein [Cucumis ...	[more]
KAA0062998.1	9.8e-47	86.61	putative retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037569.1	1.3e-46	86.61	gag/pol protein [Cucumis melo var. makuwa] >TYK03103.1 gag/pol protein [Cucumis ...	[more]
KAA0038017.1	2.2e-46	86.61	gag/pol protein [Cucumis melo var. makuwa] >TYK02212.1 gag/pol protein [Cucumis ...	[more]

BLAST of Cmc06g0163231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.3e-21	41.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.8e-12	37.50	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	6.9e-11	32.73	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.7e-09	33.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc06g0163231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMM9	1.2e-47	88.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G001...	[more]
A0A5A7TFI0	1.2e-47	87.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G0046...	[more]
A0A5A7V5V2	4.7e-47	86.61	Putative retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5A7T8E8	6.2e-47	86.61	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G0032...	[more]
A0A5D3BTT1	1.1e-46	86.61	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G001...	[more]

BLAST of Cmc06g0163231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 2..88 e-value: 5.6E-8 score: 33.0
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..112 score: 16.158932
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..112 e-value: 2.3E-24 score: 87.8
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0163231.1	Cmc06g0163231.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding