Cmc06g0163121 (gene) Melon (Charmono) v1.1

Overview
NameCmc06g0163121
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
LocationCMiso1.1chr06: 12326990 .. 12328509 (+)
RNA-Seq ExpressionCmc06g0163121
SyntenyCmc06g0163121
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGAAAGAACAATGAATTGTGGCAGTTGTTTCTTTTGATGATTTGCCCCAATGAAGGGAGGCTGTGCAGGACAAGATAACACCCGCTGAGTTCTTGGTAACATCTGGTAGTGCACGGACTTGTATTGGCAATTCGTAGTTTTTTGCCCACAAGAGTGCTCCAATGCAGTACCAGGCCAAGTCTCCCAATGCACCCAAAGCATCCAGGTCCGGTTTTACTCTTATATCTTCTTCAAGAAACTGTTTTGTTGCTGACGTTGTTGATGAGCTGTGAATCTTGAAATTGCAAACAGATACTTGGTCACTTGCTGCATTTAGAGGTTTTGCTGGCTAAAATCTATCTTCTTACATGAATGGTTCAACTTCTACCAGAACTCAATTACCTCGTTAACTTTTCAGCTTTGTTTCTAACTAGTTCCTACTATTTATTATTAATACTATAATTCAAGTATTGTTGTGATTGTGACACACTAATTGAACCTAAAAAGGATGATTTAACTTGGGTCAAAAAGTTCGTAAGGATCGTTGGTCAACTCTATTTTCTTGCTTAACATATCCTACCAAATCATTATTTTTTATTCTAACCAACATGACATCAAGAGTGTTACTTATTAGAATTAAAATCTAAAGTTTAATTAAAACCTCTCAAAGTTCCAGGTTCTAAATTTAAAATTTAGCCTCATGTAGATATTTGAAAAGTAGTTAAATCTAGATTTTGAAGTTGGGAAAAAATCTTACATAGTTAACATAGCCAAAAAGCTTAGGATCGGAGATAATCTCTTCCATTTTGGCAGTTCGAGGGTGATGCAGCCACATAGATCCATCCATGAACTGCACACCGTTCGACTCACAGGCATCAAGAATCTGATCAAGCTCTTCAACATCAAGCGCTGTAGGTTTCTCCAAGAGAATGTGCTTCTTCTTCTCAGCAGCCAAAATTGCCCACCGCCGGTGAAGGCTGGTAGGCAGTGGCATGTAGACGGCATCCACACAAGGGTCATCGAGAATCTGATTGTAGCTTCCATACACCTTGACGGTTTCTGGCAAGCCATTGACAGCAGCGAAGTTCAAGGCCTTGTCAAGTGATCGACTGGCAACGGCGGTGACGGCAGAGTTGGGTGCTGAGTTTATAGCTCTGGCCACTTTTCTGGCAATCTCAGCACAGCCGACAATGCCAAATCGGATCGGGTTCTCGGCCATCTGTGGTTGCTATCGATGACTGAAGAGCTGGGAAAGATGTGAAGAAATGGAAGGATTATCACTATAGAAAGAAAGGAGATGGTAGTTTTATTATTTTGGGGTATGCATTCGTGGATGGTGATAGGCATGGTGTCTGTTTGTGATTGGTTAAGGGAAGGATAAAAGCTGATATGGCAATATGGATTTTGTATGGTTGAGATCCATGGCTTGCTCTTAACTTGATCACCCTTCTTTGTAATTATGAGATTTAGACTTTTGCTCTCCTTTTATCAATTTGTAGCTTTGAATTCTTCTCTATAACAATAATCCCCATGAAAGTC

mRNA sequence

TAGGAAAGAACAATGAATTGTGGCAGTTGTTTCTTTTGATGATTTGCCCCAATGAAGGGAGGCTGTGCAGGACAAGATAACACCCGCTGAGTTCTTGGTAACATCTGGTAGTGCACGGACTTGTATTGGCAATTCGTAGTTTTTTGCCCACAAGAGTGCTCCAATGCAGTACCAGGCCAAGTCTCCCAATGCACCCAAAGCATCCAGTTCGAGGGTGATGCAGCCACATAGATCCATCCATGAACTGCACACCGTTCGACTCACAGGCATCAAGAATCTGATCAAGCTCTTCAACATCAAGCGCTGTAGGTTTCTCCAAGAGAATGTGCTTCTTCTTCTCAGCAGCCAAAATTGCCCACCGCCGGTGAAGGCTGGTAGGCAGTGGCATGTAGACGGCATCCACACAAGGGTCATCGAGAATCTGATTGTAGCTTCCATACACCTTGACGGTTTCTGGCAAGCCATTGACAGCAGCGAAGTTCAAGGCCTTGTCAAGTGATCGACTGGCAACGGCGGTGACGGCAGAGTTGGGTGCTGAGTTTATAGCTCTGGCCACTTTTCTGGCAATCTCAGCACAGCCGACAATGCCAAATCGGATCGGGTTCTCGGCCATCTGTGGTTGCTATCGATGACTGAAGAGCTGGGAAAGATGTGAAGAAATGGAAGGATTATCACTATAGAAAGAAAGGAGATGGTAGTTTTATTATTTTGGGGTATGCATTCGTGGATGGTGATAGGCATGGTGTCTGTTTGTGATTGGTTAAGGGAAGGATAAAAGCTGATATGGCAATATGGATTTTGTATGGTTGAGATCCATGGCTTGCTCTTAACTTGATCACCCTTCTTTGTAATTATGAGATTTAGACTTTTGCTCTCCTTTTATCAATTTGTAGCTTTGAATTCTTCTCTATAACAATAATCCCCATGAAAGTC

Coding sequence (CDS)

ATGCAGTACCAGGCCAAGTCTCCCAATGCACCCAAAGCATCCAGTTCGAGGGTGATGCAGCCACATAGATCCATCCATGAACTGCACACCGTTCGACTCACAGGCATCAAGAATCTGATCAAGCTCTTCAACATCAAGCGCTGTAGGTTTCTCCAAGAGAATGTGCTTCTTCTTCTCAGCAGCCAAAATTGCCCACCGCCGGTGAAGGCTGGTAGGCAGTGGCATGTAGACGGCATCCACACAAGGGTCATCGAGAATCTGATTGTAGCTTCCATACACCTTGACGGTTTCTGGCAAGCCATTGACAGCAGCGAAGTTCAAGGCCTTGTCAAGTGA

Protein sequence

MQYQAKSPNAPKASSSRVMQPHRSIHELHTVRLTGIKNLIKLFNIKRCRFLQENVLLLLSSQNCPPPVKAGRQWHVDGIHTRVIENLIVASIHLDGFWQAIDSSEVQGLVK
Homology
[Close]
BLAST of Cmc06g0163121 vs. NCBI nr
Match: RDY14594.1 (hypothetical protein CR513_00322, partial [Mucuna pruriens])

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-07
Identity = 31/101 (30.69%), Postives = 57/101 (56.44%), Query Frame = 0 

Query: 11  PKASSSRVMQPHRSIHELHTVRLTGIKNLIKLFNIKRCRFLQENVLLLLSSQNCPPPVKA 70
           P  S + ++ PH ++HELH +    + NL++L  IK    L+++VLLL   ++ P  V+A
Sbjct: 154 PHGSGAGMVHPHGTVHELHPIGFARLDNLVELRGIKSHGLLEQHVLLLARREHRPAHVQA 213

Query: 71  GRQWHVDGIHTRVIENLIVASIHLDGFWQAIDSSEVQGLVK 112
            R+ HV G+  R++++ +V  + L    + +   E   LV+
Sbjct: 214 RRERHVHGVDVRIVQDGLVGPVDLGTVGKTVSGREGACLVE 254

[Close]
BLAST of Cmc06g0163121 vs. ExPASy TrEMBL
Match: A0A371IHZ7 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00322 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.6e-07
Identity = 31/101 (30.69%), Postives = 57/101 (56.44%), Query Frame = 0 

Query: 11  PKASSSRVMQPHRSIHELHTVRLTGIKNLIKLFNIKRCRFLQENVLLLLSSQNCPPPVKA 70
           P  S + ++ PH ++HELH +    + NL++L  IK    L+++VLLL   ++ P  V+A
Sbjct: 154 PHGSGAGMVHPHGTVHELHPIGFARLDNLVELRGIKSHGLLEQHVLLLARREHRPAHVQA 213

Query: 71  GRQWHVDGIHTRVIENLIVASIHLDGFWQAIDSSEVQGLVK 112
            R+ HV G+  R++++ +V  + L    + +   E   LV+
Sbjct: 214 RRERHVHGVDVRIVQDGLVGPVDLGTVGKTVSGREGACLVE 254

The following BLAST results are available for this feature:
BLAST of Cmc06g0163121 vs. NCBI nr
Match NameE-valueIdentityDescription
RDY14594.17.5e-0730.69hypothetical protein CR513_00322, partial [Mucuna pruriens][more]
BLAST of Cmc06g0163121 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc06g0163121 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A371IHZ73.6e-0730.69Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Muc... [more]
BLAST of Cmc06g0163121 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc06g0163121.1Cmc06g0163121.1mRNA