Cmc06g0162851 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0162851
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Location	CMiso1.1chr06: 11988856 .. 11989506 (+)
RNA-Seq Expression	Cmc06g0162851
Synteny	Cmc06g0162851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATCAATAATGCCTTCCTAAATGGTGATTTATTCGAGGAAGTGCATATGTCTTTACCATTGAGCTATCAAACCTCACAAGTACCACAGAAAGGTAAGAAACTAGCTTGCAAACTTAACAAATCAATATACGGGTTTAAACAAGCCTCAAGACAATGGTTTCTCAAGTTTGCAACAGCTTTATCCTCACATGGCTTCCATCAATCCAAATCTGATTACTCTCTCTTTACCCGAGGACATGGACATGATTTTGTAGCATTGTTAGTATATGTCGATGACATATTATTAACCAGGTCATCCCTCCAAATAATCAACTCAGTCAAAGAAGTCCTCAAAGGACATTTCAAACTCAAGGACCTAGGACAAGCAAAATATTTTCTAGGATTAGAATTATCAAGATCTCAACAAGGGATCATGATTTCCCAAAGAAAATATTACCTCCAAATACTTGAAGATACTGGATTTCTTGAAGCTGAACCAGCTACAACTCCTATGGATCCCAATTTAAAACTATTAAAGAATGGAGGAGAACTTCTAAAGGAAGATGATATCACTTGTTATAGAAGATTAATTGGCAGGCTTATATATTTACAAATATCTCGGCCAGACATATGCTTCGTTGTTCATCGGCTAAGCCAATTCATCTAA

mRNA sequence

ATGGACATCAATAATGCCTTCCTAAATGGTGATTTATTCGAGGAAGTGCATATGTCTTTACCATTGAGCTATCAAACCTCACAAGTACCACAGAAAGGTAAGAAACTAGCTTGCAAACTTAACAAATCAATATACGGGTTTAAACAAGCCTCAAGACAATGGTTTCTCAAGTTTGCAACAGCTTTATCCTCACATGGCTTCCATCAATCCAAATCTGATTACTCTCTCTTTACCCGAGGACATGGACATGATTTTGTAGCATTGTTAGTATATGTCGATGACATATTATTAACCAGGTCATCCCTCCAAATAATCAACTCAGTCAAAGAAGTCCTCAAAGGACATTTCAAACTCAAGGACCTAGGACAAGCAAAATATTTTCTAGGATTAGAATTATCAAGATCTCAACAAGGGATCATGATTTCCCAAAGAAAATATTACCTCCAAATACTTGAAGATACTGGATTTCTTGAAGCTGAACCAGCTACAACTCCTATGGATCCCAATTTAAAACTATTAAAGAATGGAGGAGAACTTCTAAAGGAAGATGATATCACTTGTTATAGAAGATTAATTGGCAGGCTTATATATTTACAAATATCTCGGCCAGACATATGCTTCGTTGTTCATCGGCTAAGCCAATTCATCTAA

Coding sequence (CDS)

ATGGACATCAATAATGCCTTCCTAAATGGTGATTTATTCGAGGAAGTGCATATGTCTTTACCATTGAGCTATCAAACCTCACAAGTACCACAGAAAGGTAAGAAACTAGCTTGCAAACTTAACAAATCAATATACGGGTTTAAACAAGCCTCAAGACAATGGTTTCTCAAGTTTGCAACAGCTTTATCCTCACATGGCTTCCATCAATCCAAATCTGATTACTCTCTCTTTACCCGAGGACATGGACATGATTTTGTAGCATTGTTAGTATATGTCGATGACATATTATTAACCAGGTCATCCCTCCAAATAATCAACTCAGTCAAAGAAGTCCTCAAAGGACATTTCAAACTCAAGGACCTAGGACAAGCAAAATATTTTCTAGGATTAGAATTATCAAGATCTCAACAAGGGATCATGATTTCCCAAAGAAAATATTACCTCCAAATACTTGAAGATACTGGATTTCTTGAAGCTGAACCAGCTACAACTCCTATGGATCCCAATTTAAAACTATTAAAGAATGGAGGAGAACTTCTAAAGGAAGATGATATCACTTGTTATAGAAGATTAATTGGCAGGCTTATATATTTACAAATATCTCGGCCAGACATATGCTTCGTTGTTCATCGGCTAAGCCAATTCATCTAA

Protein sequence

MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFATALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKDLGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELLKEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI

Homology

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BLAST of Cmc06g0162851 vs. NCBI nr
Match: XP_038879273.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida])

HSP 1 Score: 387.5 bits (994), Expect = 7.6e-104
Identity = 196/216 (90.74%), Postives = 201/216 (93.06%), Query Frame = 0


Query: 1   MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
           MDINNAFLNGDLFEEVHMSLPL YQTSQVP KG+KLACKLNKSIYG KQASRQW LKF  
Sbjct: 92  MDINNAFLNGDLFEEVHMSLPLGYQTSQVPWKGEKLACKLNKSIYGLKQASRQWSLKFTA 151

Query: 61  ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
           ALSSHGFHQSKSDYSLFT+GHGHDFVALLVYVDDILLT  S QII+SVKEVLKGHFKLKD
Sbjct: 152 ALSSHGFHQSKSDYSLFTQGHGHDFVALLVYVDDILLTGPSPQIISSVKEVLKGHFKLKD 211

Query: 121 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
           LG AK FLGL+LSRSQQGIMISQRKY LQILEDTGFLEA+PATTPMDPNLKL KN GELL
Sbjct: 212 LGHAKDFLGLKLSRSQQGIMISQRKYCLQILEDTGFLEAKPATTPMDPNLKLSKNEGELL 271

Query: 181 KEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI 217
           K DDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI
Sbjct: 272 KADDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI 307

[Close]

BLAST of Cmc06g0162851 vs. NCBI nr
Match: KAA0037194.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK13878.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 373.2 bits (957), Expect = 1.5e-99
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
           MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT
Sbjct: 420 MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 479

Query: 61  ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
           ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD
Sbjct: 480 ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 539

Query: 121 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
           LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL
Sbjct: 540 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 599

Query: 181 KEDDITCY 189
           KEDDIT +
Sbjct: 600 KEDDITSF 607

[Close]

BLAST of Cmc06g0162851 vs. NCBI nr
Match: XP_031744313.1 (uncharacterized protein LOC116404977 [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 4.6e-93
Identity = 174/216 (80.56%), Postives = 192/216 (88.89%), Query Frame = 0


Query: 1   MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
           MDINNAFLNGDLFEEVHM+LPL YQTSQVP KG+KLACKLNKSIYG KQASRQWFLKFA 
Sbjct: 1   MDINNAFLNGDLFEEVHMTLPLGYQTSQVPDKGEKLACKLNKSIYGLKQASRQWFLKFAA 60

Query: 61  ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
           A+SSHGF QSK+DYSLFT+G+G  FVALLVYVDDILLT  S   INSVK+ LK HFKLKD
Sbjct: 61  AISSHGFIQSKADYSLFTKGNGSTFVALLVYVDDILLTGPSPSNINSVKDSLKAHFKLKD 120

Query: 121 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
           LGQA+YFLGLELSRS++G+M+SQRKY LQILEDTGFL+++P   PMDPNLKL K+ GE L
Sbjct: 121 LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKPVVAPMDPNLKLCKSEGEQL 180

Query: 181 KEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI 217
            E+D TCYRRLIGRLIYLQISRPDICF VHRLSQF+
Sbjct: 181 IEEDATCYRRLIGRLIYLQISRPDICFSVHRLSQFL 216

[Close]

BLAST of Cmc06g0162851 vs. NCBI nr
Match: XP_031745923.1 (uncharacterized protein LOC116406346 [Cucumis sativus] >XP_031745939.1 uncharacterized protein LOC116406359 [Cucumis sativus])

HSP 1 Score: 345.9 bits (886), Expect = 2.5e-91
Identity = 171/216 (79.17%), Postives = 189/216 (87.50%), Query Frame = 0


Query: 1   MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
           MDINNAFLNGDLFEEVHM+LPL YQ SQVP KG+KLACKLNKSIYG KQASRQWFLKFA 
Sbjct: 1   MDINNAFLNGDLFEEVHMTLPLGYQVSQVPDKGEKLACKLNKSIYGLKQASRQWFLKFAA 60

Query: 61  ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
            +SSHGF QSK+DYSLFT+G+G  FVALLVYVDDILLT  S   INSVK+ LK HFKLKD
Sbjct: 61  TISSHGFIQSKADYSLFTKGNGSTFVALLVYVDDILLTGPSPSNINSVKDSLKAHFKLKD 120

Query: 121 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
           LGQA+YFLGLELSRS++G+M+SQRKY LQILEDTGFL+++    PMDPNLKL K+ GE L
Sbjct: 121 LGQARYFLGLELSRSERGLMLSQRKYCLQILEDTGFLDSKSVVAPMDPNLKLCKSEGEQL 180

Query: 181 KEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI 217
            E+D TCYRRLIGRLIYLQISRPDICF VHRLSQF+
Sbjct: 181 TEEDATCYRRLIGRLIYLQISRPDICFSVHRLSQFL 216

[Close]

BLAST of Cmc06g0162851 vs. NCBI nr
Match: XP_038896371.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida])

HSP 1 Score: 343.2 bits (879), Expect = 1.6e-90
Identity = 173/199 (86.93%), Postives = 179/199 (89.95%), Query Frame = 0


Query: 18  MSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFATALSSHGFHQSKSDYSLF 77
           MSL L YQTSQVP+KG+KL CKLNKS Y  KQASRQWFLKF  ALSSHGFHQSKSDYSLF
Sbjct: 1   MSLSLGYQTSQVPRKGEKLTCKLNKSTYRLKQASRQWFLKFTAALSSHGFHQSKSDYSLF 60

Query: 78  TRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKDLGQAKYFLGLELSRSQQ 137
           TRGHGHDFVALLVYVDDILLT  S QII+SVKEVLKGHFKLKDLG AKYFLGLELSRSQQ
Sbjct: 61  TRGHGHDFVALLVYVDDILLTGPSPQIISSVKEVLKGHFKLKDLGYAKYFLGLELSRSQQ 120

Query: 138 GIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELLKEDDITCYRRLIGRLIY 197
           GIMISQRKY LQILEDTGFLEA+P TTPMDPNLKL KN GE LK DDITCYRRLI RLIY
Sbjct: 121 GIMISQRKYCLQILEDTGFLEAKPVTTPMDPNLKLSKNEGEFLKADDITCYRRLICRLIY 180

Query: 198 LQISRPDICFVVHRLSQFI 217
           LQIS+PDICF +HRLSQFI
Sbjct: 181 LQISQPDICFAIHRLSQFI 199

[Close]

BLAST of Cmc06g0162851 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-39
Identity = 91/216 (42.13%), Postives = 127/216 (58.80%), Query Frame = 0


Query: 1    MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
            +D+NNAFL G L ++V+MS P  +     P       CKL K++YG KQA R W+++   
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRP----NYVCKLRKALYGLKQAPRAWYVELRN 1123

Query: 61   ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
             L + GF  S SD SLF    G   V +LVYVDDIL+T +   ++++  + L   F +KD
Sbjct: 1124 YLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKD 1183

Query: 121  LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
              +  YFLG+E  R   G+ +SQR+Y L +L  T  + A+P TTPM P+ KL    G   
Sbjct: 1184 HEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSG--T 1243

Query: 181  KEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI 217
            K  D T YR ++G L YL  +RPDI + V+RLSQF+
Sbjct: 1244 KLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFM 1273

[Close]

BLAST of Cmc06g0162851 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.8e-39
Identity = 89/216 (41.20%), Postives = 125/216 (57.87%), Query Frame = 0


Query: 1    MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
            +D+NNAFL G L +EV+MS P  +     P       C+L K+IYG KQA R W+++  T
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPD----YVCRLRKAIYGLKQAPRAWYVELRT 1106

Query: 61   ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
             L + GF  S SD SLF    G   + +LVYVDDIL+T +   ++    + L   F +K+
Sbjct: 1107 YLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKE 1166

Query: 121  LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
                 YFLG+E  R  QG+ +SQR+Y L +L  T  L A+P  TPM  + KL  + G   
Sbjct: 1167 HEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSG--T 1226

Query: 181  KEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI 217
            K  D T YR ++G L YL  +RPD+ + V+RLSQ++
Sbjct: 1227 KLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYM 1256

[Close]

BLAST of Cmc06g0162851 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.7e-30
Identity = 81/225 (36.00%), Postives = 130/225 (57.78%), Query Frame = 0


Query: 1    MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKK-LACKLNKSIYGFKQASRQWFLKFA 60
            +D+  AFL+GDL EE++M  P  ++ +     GKK + CKLNKS+YG KQA RQW++KF 
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVA-----GKKHMVCKLNKSLYGLKQAPRQWYMKFD 980

Query: 61   TALSSHGFHQSKSDYSL-FTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKL 120
            + + S  + ++ SD  + F R   ++F+ LL+YVDD+L+      +I  +K  L   F +
Sbjct: 981  SFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDM 1040

Query: 121  KDLGQAKYFLGLEL--SRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNG 180
            KDLG A+  LG+++   R+ + + +SQ KY  ++LE      A+P +TP+  +LKL K  
Sbjct: 1041 KDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKM 1100

Query: 181  GELLKEDDITC----YRRLIGRLIYLQI-SRPDICFVVHRLSQFI 217
                 E+        Y   +G L+Y  + +RPDI   V  +S+F+
Sbjct: 1101 CPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFL 1140

[Close]

BLAST of Cmc06g0162851 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-25
Identity = 76/222 (34.23%), Postives = 120/222 (54.05%), Query Frame = 0


Query: 1    MDINNAFLNGDLFEEVHMSLP--LSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKF 60
            MD+  AFLNG L EE++M LP  +S  +  V        CKLNK+IYG KQA+R WF  F
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISCNSDNV--------CKLNKAIYGLKQAARCWFEVF 1060

Query: 61   ATALSSHGFHQSKSDYSLF--TRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHF 120
              AL    F  S  D  ++   +G+ ++ + +L+YVDD+++    +  +N+ K  L   F
Sbjct: 1061 EQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKF 1120

Query: 121  KLKDLGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDP--NLKLLK 180
            ++ DL + K+F+G+ +   +  I +SQ  Y  +IL           +TP+    N +LL 
Sbjct: 1121 RMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLN 1180

Query: 181  NGGELLKEDDITCYRRLIGRLIYLQI-SRPDICFVVHRLSQF 216
            +      ED  T  R LIG L+Y+ + +RPD+   V+ LS++
Sbjct: 1181 S-----DEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRY 1209

[Close]

BLAST of Cmc06g0162851 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 7.8e-19
Identity = 64/218 (29.36%), Postives = 110/218 (50.46%), Query Frame = 0


Query: 1   MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
           MD++ AFLN  + E +++  P  +    V ++      +L   +YG KQA   W      
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGF----VNERNPDYVWELYGGMYGLKQAPLLWNEHINN 60

Query: 61  ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
            L   GF + + ++ L+ R      + + VYVDD+L+   S +I + VK+ L   + +KD
Sbjct: 61  TLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKD 120

Query: 121 LGQAKYFLGLELSRSQQG-IMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGEL 180
           LG+   FLGL + +S  G I +S + Y  +   ++     +   TP+  +  L +     
Sbjct: 121 LGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPH 180

Query: 181 LKEDDITCYRRLIGRLIY-LQISRPDICFVVHRLSQFI 217
           LK  DIT Y+ ++G+L++     RPDI + V  LS+F+
Sbjct: 181 LK--DITPYQSIVGQLLFCANTGRPDISYPVSLLSRFL 212

[Close]

BLAST of Cmc06g0162851 vs. ExPASy TrEMBL
Match: A0A5A7T140 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00650 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.1e-100
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
           MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT
Sbjct: 420 MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 479

Query: 61  ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
           ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD
Sbjct: 480 ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 539

Query: 121 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
           LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL
Sbjct: 540 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 599

Query: 181 KEDDITCY 189
           KEDDIT +
Sbjct: 600 KEDDITSF 607

[Close]

BLAST of Cmc06g0162851 vs. ExPASy TrEMBL
Match: A0A5D3BDH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001210 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 8.5e-69
Identity = 137/177 (77.40%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 1   MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
           MDINNAFLNGDLFEEVH++LPL  QTSQVP+KG+KLACKLNKSIY  KQASRQWFLKFA 
Sbjct: 277 MDINNAFLNGDLFEEVHITLPL--QTSQVPKKGEKLACKLNKSIYDLKQASRQWFLKFAA 336

Query: 61  ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
           A+SSHGF QSK DYSLFTRG+G  FVALLVYVDD+LLT  S  +INSVK  LK HFKLKD
Sbjct: 337 AISSHGFIQSKVDYSLFTRGNGSTFVALLVYVDDLLLTGPSPSVINSVKNTLKAHFKLKD 396

Query: 121 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGG 178
           LG+AKYFLGLELSRSQQG+M+SQRKY L+ILEDT FL+++P   PMD NLKL K+ G
Sbjct: 397 LGKAKYFLGLELSRSQQGLMLSQRKYCLRILEDTRFLDSKPVVAPMDSNLKLCKSEG 451

[Close]

BLAST of Cmc06g0162851 vs. ExPASy TrEMBL
Match: A0A6J1BT54 (uncharacterized protein LOC111005480 OS=Momordica charantia OX=3673 GN=LOC111005480 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.2e-67
Identity = 136/216 (62.96%), Postives = 166/216 (76.85%), Query Frame = 0


Query: 1   MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
           +D+NNAFL+GDLFEEV+M L L Y+ + V  KG++L C+L+KS+YG KQASRQWF KF+ 
Sbjct: 113 LDVNNAFLHGDLFEEVYMDLLLGYKHNMVASKGERLVCRLHKSVYGLKQASRQWFDKFSC 172

Query: 61  ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
           AL    F QSKSDYSLFTRG G  FVALLVYVDDI+LT +S  ++  +K  L   FKLKD
Sbjct: 173 ALLHLRFQQSKSDYSLFTRGAGDTFVALLVYVDDIILTEASSLLLGQLKTHLDSVFKLKD 232

Query: 121 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
           LG  +YFLGLEL+RS  GI++SQR Y L + ED+G L ++PAT PMDP +KL  + G+LL
Sbjct: 233 LGSLRYFLGLELARSSSGILLSQRNYALHLFEDSGLLASKPATLPMDPTVKLSSSVGKLL 292

Query: 181 KEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI 217
             DD T YRRLIGRLIYL ISRPDI FVVH+LSQ+I
Sbjct: 293 --DDPTAYRRLIGRLIYLTISRPDITFVVHKLSQYI 326

[Close]

BLAST of Cmc06g0162851 vs. ExPASy TrEMBL
Match: A0A2N9IAK7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48995 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.0e-62
Identity = 125/216 (57.87%), Postives = 155/216 (71.76%), Query Frame = 0


Query: 1    MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
            +D+NNAFL+G+L EEV+M+LP  + +         + CKL KS+YG KQASRQWF KF+T
Sbjct: 822  LDVNNAFLHGELDEEVYMTLPPGFHSKGEQSHSPSIVCKLQKSLYGLKQASRQWFSKFST 881

Query: 61   ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
             L  HGF QSK+DYSLFT+ HG  F+ALLVYVDDIL+  +    +  +K  L   FKLKD
Sbjct: 882  TLLQHGFTQSKADYSLFTKQHGSCFIALLVYVDDILIASNDATAVAQLKTYLDSQFKLKD 941

Query: 121  LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
            LG  +YFLGLE++RS +GI +SQRKY L+I+ED G L  +PA  PMD NLKL K  G LL
Sbjct: 942  LGPVRYFLGLEIARSSKGISVSQRKYALEIMEDAGMLGCKPAKCPMDQNLKLSKGEGSLL 1001

Query: 181  KEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI 217
               D T YRRLIGRL+YL ++RPDI F VHRLSQF+
Sbjct: 1002 --PDPTVYRRLIGRLMYLTMTRPDIVFSVHRLSQFM 1035

[Close]

BLAST of Cmc06g0162851 vs. ExPASy TrEMBL
Match: A0A2N9FZI4 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23869 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.0e-62
Identity = 125/216 (57.87%), Postives = 155/216 (71.76%), Query Frame = 0


Query: 1    MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
            +D+NNAFL+G+L EEV+M+LP  + +         + CKL KS+YG KQASRQWF KF+T
Sbjct: 858  LDVNNAFLHGELDEEVYMTLPPGFHSKGEQSHSPSIVCKLQKSLYGLKQASRQWFSKFST 917

Query: 61   ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
             L  HGF QSK+DYSLFT+ HG  F+ALLVYVDDIL+  +    +  +K  L   FKLKD
Sbjct: 918  TLLQHGFTQSKADYSLFTKQHGSCFIALLVYVDDILIASNDATAVAQLKTYLDSQFKLKD 977

Query: 121  LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKLLKNGGELL 180
            LG  +YFLGLE++RS +GI +SQRKY L+I+ED G L  +PA  PMD NLKL K  G LL
Sbjct: 978  LGPVRYFLGLEIARSSKGISVSQRKYALEIMEDAGMLGCKPARCPMDQNLKLSKGEGSLL 1037

Query: 181  KEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQFI 217
               D T YRRLIGRL+YL ++RPDI F VHRLSQF+
Sbjct: 1038 --PDPTVYRRLIGRLMYLTMTRPDIVFSVHRLSQFM 1071

[Close]

BLAST of Cmc06g0162851 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53
Identity = 110/216 (50.93%), Postives = 145/216 (67.13%), Query Frame = 0


Query: 1   MDINNAFLNGDLFEEVHMSLPLSYQTSQVPQKGKKLACKLNKSIYGFKQASRQWFLKFAT 60
           +DI+NAFLNGDL EE++M LP  Y   Q         C L KSIYG KQASRQWFLKF+ 
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  ALSSHGFHQSKSDYSLFTRGHGHDFVALLVYVDDILLTRSSLQIINSVKEVLKGHFKLKD 120
            L   GF QS SD++ F +     F+ +LVYVDDI++  ++   ++ +K  LK  FKL+D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 LGQAKYFLGLELSRSQQGIMISQRKYYLQILEDTGFLEAEPATTPMDPNLKL-LKNGGEL 180
           LG  KYFLGLE++RS  GI I QRKY L +L++TG L  +P++ PMDP++     +GG+ 
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 181 LKEDDITCYRRLIGRLIYLQISRPDICFVVHRLSQF 216
           +   D   YRRLIGRL+YLQI+R DI F V++LSQF
Sbjct: 373 V---DAKAYRRLIGRLMYLQITRLDISFAVNKLSQF 405

[Close]

BLAST of Cmc06g0162851 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-19
Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 88  LLVYVDDILLTRSSLQIINSVKEVLKGHFKLKDLGQAKYFLGLELSRSQQGIMISQRKYY 147
           LL+YVDDILLT SS  ++N +   L   F +KDLG   YFLG+++     G+ +SQ KY 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 148 LQILEDTGFLEAEPATTPMDPNLKLLKNGGELLKEDDITCYRRLIGRLIYLQISRPDICF 207
            QIL + G L+ +P +TP+   LK L +     K  D + +R ++G L YL ++RPDI +
Sbjct: 63  EQILNNAGMLDCKPMSTPLP--LK-LNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISY 122

Query: 208 VVHRLSQ 215
            V+ + Q
Sbjct: 123 AVNIVCQ 126

The following BLAST results are available for this feature:

BLAST of Cmc06g0162851 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879273.1	7.6e-104	90.74	uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]	[more]
KAA0037194.1	1.5e-99	98.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_031744313.1	4.6e-93	80.56	uncharacterized protein LOC116404977 [Cucumis sativus]	[more]
XP_031745923.1	2.5e-91	79.17	uncharacterized protein LOC116406346 [Cucumis sativus] >XP_031745939.1 uncharact...	[more]
XP_038896371.1	1.6e-90	86.93	uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]	[more]

BLAST of Cmc06g0162851 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.8e-39	42.13	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	6.8e-39	41.20	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	5.7e-30	36.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-25	34.23	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	7.8e-19	29.36	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc06g0162851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T140	7.1e-100	98.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BDH6	8.5e-69	77.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6J1BT54	1.2e-67	62.96	uncharacterized protein LOC111005480 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A2N9IAK7	2.0e-62	57.87	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48995 PE=4 SV=1	[more]
A0A2N9FZI4	2.0e-62	57.87	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of Cmc06g0162851 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-53	50.93	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.6e-19	40.94	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..166 e-value: 7.0E-41 score: 140.4
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 2..114
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..114
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0162851.1	Cmc06g0162851.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity