Cmc06g0162361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0162361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr06: 11124244 .. 11125209 (-)
RNA-Seq Expression	Cmc06g0162361
Synteny	Cmc06g0162361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTTGATCGGTTCGGGAGATTGGTAAAGAATGGACTTCTAAACGAGTTAAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACATCTTACTGAAAAACGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGTTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAATATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTAGAGAGTACATGGATTTGAGATTCCAAGACTATATGATAGAGCATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAAGAGAAATAGAACCTTGTTGGACATGGTTCGTTCAATGAGTTATGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAATAATGTTTCCTCGAAGAGTGTTTCTGAAACACCTTTCGTGTTATGGAGAGGAAGTAAACCTAGTTTAAGTCACTTCATAATCTGGGGTTGTCCAGCACACGTGTTAGTGACAAATCCCAAGAAATTGGAACTTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTTGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAATATTAAATGAAGCTACTGATGAATAA

mRNA sequence

ATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTTGATCGGTTCGGGAGATTGGTAAAGAATGGACTTCTAAACGAGTTAAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACATCTTACTGAAAAACGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGTTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAATATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTAGAGAGTACATGGATTTGAGATTCCAAGACTATATGATAGAGCATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAAGAGAAATAGAACCTTGTTGGACATGGTTCGTTCAATGAGTTATGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAATAATGTTTCCTCGAAGAGTGTTTCTGAAACACCTTTCGTGTTATGGAGAGGAAGTAAACCTAGTTTAAGTCACTTCATAATCTGGGGTTGTCCAGCACACGTGTTAGTGACAAATCCCAAGAAATTGGAACTTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTTGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAATATTAAATGAAGCTACTGATGAATAA

Coding sequence (CDS)

ATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTTGATCGGTTCGGGAGATTGGTAAAGAATGGACTTCTAAACGAGTTAAAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACATCTTACTGAAAAACGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGTTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAATATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTAGAGAGTACATGGATTTGAGATTCCAAGACTATATGATAGAGCATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAAGAGAAATAGAACCTTGTTGGACATGGTTCGTTCAATGAGTTATGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAATAATGTTTCCTCGAAGAGTGTTTCTGAAACACCTTTCGTGTTATGGAGAGGAAGTAAACCTAGTTTAAGTCACTTCATAATCTGGGGTTGTCCAGCACACGTGTTAGTGACAAATCCCAAGAAATTGGAACTTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTTGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAATATTAAATGAAGCTACTGATGAATAA

Protein sequence

MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTKRHLTEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVRSMSYAQLPSSFWGYAVETAVHILNNVSSKSVSETPFVLWRGSKPSLSHFIIWGCPAHVLVTNPKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLILNEATDE

Homology

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BLAST of Cmc06g0162361 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 615.9 bits (1587), Expect = 1.9e-172
Identity = 302/322 (93.79%), Postives = 307/322 (95.34%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDR GRLVKNGLLN+LKD SLPPCESCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRHLTEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHK 120
           GKMTKR  T K YRAKEPLELIHSDLCGPMNVK RGGFEYFISFIDDYSRYGYLYLMEHK
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SEALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQN 180
           SEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 GVSEKRNRTLLDMVRS-MSYAQLPSSFWGYAVETAVHILNNVSSKSVSETPFVLWRGSKP 240
           GVSE+RNRTLLDMVRS MSYAQLPSSFWGYAVETAVHILNNV SKSVSETPF LWRG KP
Sbjct: 509 GVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKP 568

Query: 241 SLSHFIIWGCPAHVLVTNPKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 300
           SLSHF IWGCPAHVLVTNPKKLE RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL
Sbjct: 569 SLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 628

Query: 301 EEDHMRDHKPRSKLILNEATDE 322
           EEDHMR+HKPRSKL+L+EATDE
Sbjct: 629 EEDHMRNHKPRSKLVLSEATDE 650

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BLAST of Cmc06g0162361 vs. NCBI nr
Match: TYK13967.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 607.8 bits (1566), Expect = 5.3e-170
Identity = 295/296 (99.66%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 26  RLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTKRHLTEKRYRAKEPLELIHSD 85
           +LGHINLDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTKRHLTEKRYRAKEPLELIHSD
Sbjct: 127 KLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTKRHLTEKRYRAKEPLELIHSD 186

Query: 86  LCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL 145
           LCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
Sbjct: 187 LCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL 246

Query: 146 RSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVRSMSYAQLPSS 205
           RSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVRSMSYAQLPSS
Sbjct: 247 RSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVRSMSYAQLPSS 306

Query: 206 FWGYAVETAVHILNNVSSKSVSETPFVLWRGSKPSLSHFIIWGCPAHVLVTNPKKLELRS 265
           FWGYAVETAVHILNNVSSKSVSETPFVLWRGSKPSLSHFIIWGCPAHVLVTNPKKLELRS
Sbjct: 307 FWGYAVETAVHILNNVSSKSVSETPFVLWRGSKPSLSHFIIWGCPAHVLVTNPKKLELRS 366

Query: 266 RLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLILNEATDE 322
           RLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLILNEATDE
Sbjct: 367 RLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLILNEATDE 422

[Close]

BLAST of Cmc06g0162361 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 605.5 bits (1560), Expect = 2.6e-169
Identity = 297/322 (92.24%), Postives = 304/322 (94.41%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDR GRLVK+GLLN+LKD SLPPCESCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRHLTEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHK 120
           GKMTKR  T K YRAKEPLELIHSDLCGPMNVK RG FEYFISFIDDYSRYGYLYLMEHK
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SEALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQN 180
           SEALEKFKEYK EVENLLSKKIKI RSDRG EYMDL FQDYMIEHGIQSQLSAPGTPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 GVSEKRNRTLLDMVRS-MSYAQLPSSFWGYAVETAVHILNNVSSKSVSETPFVLWRGSKP 240
           GVSE+RNRTLLDMVRS MSYAQLPSSFWGYAVETAVHILNNV SKSVSETPF LWRG KP
Sbjct: 509 GVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKP 568

Query: 241 SLSHFIIWGCPAHVLVTNPKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 300
           SLSHF IWGCPAHVLVTNPKKLE RSRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFL
Sbjct: 569 SLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFL 628

Query: 301 EEDHMRDHKPRSKLILNEATDE 322
           EEDHMR+HKPRSKL+L+EATDE
Sbjct: 629 EEDHMRNHKPRSKLVLSEATDE 650

[Close]

BLAST of Cmc06g0162361 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 594.3 bits (1531), Expect = 6.0e-166
Identity = 291/322 (90.37%), Postives = 298/322 (92.55%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLE 60
           MFRTANTQNKRQRIS NNNTYLWHLRLGHINLDR GRLVKNGLLN+L+DDSLPPCESCLE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  GKMTKRHLTEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHK 120
           GKMTKR  T K YRAKEPLELIHSDLCGPMNVK  GGFEYFISFIDDYS YGYLYL+EHK
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHK 420

Query: 121 SEALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQN 180
           SEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQN
Sbjct: 421 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 480

Query: 181 GVSEKRNRTLLDMVRS-MSYAQLPSSFWGYAVETAVHILNNVSSKSVSETPFVLWRGSKP 240
           GVSE+RNRTLLDMV S MSY QLPSSFWGYAVETAVHILNNV SK+V ETPF LWRG KP
Sbjct: 481 GVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVETAVHILNNVPSKNVFETPFELWRGRKP 540

Query: 241 SLSHFIIWGCPAHVLVTNPKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 300
           SLSHF IW CP HVLVTNPKKLE RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATF 
Sbjct: 541 SLSHFRIWVCPVHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFF 600

Query: 301 EEDHMRDHKPRSKLILNEATDE 322
           EEDHMRDHKPR KL+L+EATDE
Sbjct: 601 EEDHMRDHKPRRKLVLSEATDE 622

[Close]

BLAST of Cmc06g0162361 vs. NCBI nr
Match: KAA0065386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 585.1 bits (1507), Expect = 3.7e-163
Identity = 288/322 (89.44%), Postives = 298/322 (92.55%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNN TYLWHLRLGHINLD+ GRLVKNGLLN+L+DDSLPPCES LE
Sbjct: 182 MFRTANTQNKRQRISPNNGTYLWHLRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLE 241

Query: 61  GKMTKRHLTEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHK 120
           GKMTKR    K YRAKEPLELIHSDL GPMNVK R GFEYFISFIDDYSRYGYLYLMEHK
Sbjct: 242 GKMTKRPFIGKGYRAKEPLELIHSDLYGPMNVKAREGFEYFISFIDDYSRYGYLYLMEHK 301

Query: 121 SEALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQN 180
           SEALEK KEY+ EVENLLS+KIKILRSDRG EYMDLRFQDYMIEHGIQSQLSA GTPQQN
Sbjct: 302 SEALEKLKEYETEVENLLSEKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSALGTPQQN 361

Query: 181 GVSEKRNRTLLDMVRS-MSYAQLPSSFWGYAVETAVHILNNVSSKSVSETPFVLWRGSKP 240
           GVSE+RNRTLLDMVRS MSYAQ PSSFWGYAVETAVHILNNV SKSVSE PF LWRG KP
Sbjct: 362 GVSERRNRTLLDMVRSMMSYAQFPSSFWGYAVETAVHILNNVPSKSVSEPPFELWRGRKP 421

Query: 241 SLSHFIIWGCPAHVLVTNPKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 300
           SLSHF IWGCP H+LVTNPKKLE RSRLCQFVGYPK+TRGGLFFDPQENRVFVSTNATFL
Sbjct: 422 SLSHFRIWGCPVHMLVTNPKKLEPRSRLCQFVGYPKDTRGGLFFDPQENRVFVSTNATFL 481

Query: 301 EEDHMRDHKPRSKLILNEATDE 322
           EEDHMRDHKPRSKL+LNEAT+E
Sbjct: 482 EEDHMRDHKPRSKLVLNEATNE 503

[Close]

BLAST of Cmc06g0162361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 6.5e-54
Identity = 110/285 (38.60%), Postives = 169/285 (59.30%), Query Frame = 0


Query: 22  LWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTKRHLTEKRYRAKEPLEL 81
           LWH R+GH++      L K  L++  K  ++ PC+ CL GK  +        R    L+L
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDL 483

Query: 82  IHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKK 141
           ++SD+CGPM ++  GG +YF++FIDD SR  ++Y+++ K +  + F+++ A VE    +K
Sbjct: 484 VYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRK 543

Query: 142 IKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVRSM-SYA 201
           +K LRSD G EY    F++Y   HGI+ + + PGTPQ NGV+E+ NRT+++ VRSM   A
Sbjct: 544 LKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMA 603

Query: 202 QLPSSFWGYAVETAVHILNNVSSKSVS-ETPFVLWRGSKPSLSHFIIWGCP--AHVLVTN 261
           +LP SFWG AV+TA +++N   S  ++ E P  +W   + S SH  ++GC   AHV    
Sbjct: 604 KLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQ 663

Query: 262 PKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEED 303
             KL+ +S  C F+GY  E  G   +DP + +V  S +  F E +
Sbjct: 664 RTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESE 708

[Close]

BLAST of Cmc06g0162361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 5.7e-42
Identity = 104/301 (34.55%), Postives = 162/301 (53.82%), Query Frame = 0


Query: 18  NNTYLWHLRLGHIN------LDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTK---RHL 77
           NN  LWH R GHI+      + R        LLN L + S   CE CL GK  +   + L
Sbjct: 413 NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNL-ELSCEICEPCLNGKQARLPFKQL 472

Query: 78  TEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFK 137
            +K +  K PL ++HSD+CGP+         YF+ F+D ++ Y   YL+++KS+    F+
Sbjct: 473 KDKTH-IKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQ 532

Query: 138 EYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNR 197
           ++ A+ E   + K+  L  D GREY+    + + ++ GI   L+ P TPQ NGVSE+  R
Sbjct: 533 DFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIR 592

Query: 198 TLLDMVRSM-SYAQLPSSFWGYAVETAVHILNNVSSKSV---SETPFVLWRGSKPSLSHF 257
           T+ +  R+M S A+L  SFWG AV TA +++N + S+++   S+TP+ +W   KP L H 
Sbjct: 593 TITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHL 652

Query: 258 IIWGCPAHVLVTNPK-KLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDH 305
            ++G   +V + N + K + +S    FVGY  E  G   +D   N  F+      ++E +
Sbjct: 653 RVFGATVYVHIKNKQGKFDDKSFKSIFVGY--EPNGFKLWD-AVNEKFIVARDVVVDETN 708

[Close]

BLAST of Cmc06g0162361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-34
Identity = 87/283 (30.74%), Postives = 148/283 (52.30%), Query Frame = 0


Query: 23  WHLRLGHINLDRFGRLVKNGLLNELK-DDSLPPCESCLEGKMTKRHLTEKRYRAKEPLEL 82
           WH RLGH +L     ++ N  L  L     L  C  C   K  K   +     + +PLE 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 83  IHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKK 142
           I+SD+     + +   + Y++ F+D ++RY +LY ++ KS+  + F  +K+ VEN    +
Sbjct: 506 IYSDVWSSPILSI-DNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 143 IKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDM-VRSMSYA 202
           I  L SD G E++ LR  DY+ +HGI    S P TP+ NG+SE+++R +++M +  +S+A
Sbjct: 566 IGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHA 625

Query: 203 QLPSSFWGYAVETAVHILNNVSSKSVS-ETPFVLWRGSKPSLSHFIIWGCPAHVLVT--N 262
            +P ++W YA   AV+++N + +  +  ++PF    G  P+     ++GC  +  +   N
Sbjct: 626 SVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYN 685

Query: 263 PKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLE 301
             KLE +S+ C F+GY       L       R++ S +  F E
Sbjct: 686 RHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDE 725

[Close]

BLAST of Cmc06g0162361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-33
Identity = 84/283 (29.68%), Postives = 145/283 (51.24%), Query Frame = 0


Query: 23  WHLRLGHINLDRFGRLVKNGLLNELK-DDSLPPCESCLEGKMTKRHLTEKRYRAKEPLEL 82
           WH RLGH        ++ N  L+ L        C  CL  K  K   ++    +  PLE 
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 83  IHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKK 142
           I+SD+     +     + Y++ F+D ++RY +LY ++ KS+  E F  +K  +EN    +
Sbjct: 527 IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 586

Query: 143 IKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDM-VRSMSYA 202
           I    SD G E++ L   +Y  +HGI    S P TP+ NG+SE+++R +++  +  +S+A
Sbjct: 587 IGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 646

Query: 203 QLPSSFWGYAVETAVHILNNVSSKSVS-ETPFVLWRGSKPSLSHFIIWGCPAHVLVT--N 262
            +P ++W YA   AV+++N + +  +  E+PF    G+ P+     ++GC  +  +   N
Sbjct: 647 SIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYN 706

Query: 263 PKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLE 301
             KL+ +SR C F+GY       L    Q +R+++S +  F E
Sbjct: 707 QHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDE 746

[Close]

BLAST of Cmc06g0162361 vs. ExPASy Swiss-Prot
Match: Q07791 (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR3 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-20
Identity = 70/235 (29.79%), Postives = 117/235 (49.79%), Query Frame = 0


Query: 4   TANTQNKRQRISPNNNTY-LWHLRLGHINLDRFGRLVKNGLLNELKDDSLP-------PC 63
           T N  NK +  S N   Y L H  LGH N     + +K   +  LK+  +         C
Sbjct: 576 TINNVNKSK--SVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQC 635

Query: 64  ESCLEGKMTK-RHLTEKRYR---AKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRY 123
             CL GK TK RH+   R +   + EP + +H+D+ GP++   +    YFISF D+ +R+
Sbjct: 636 PDCLIGKSTKHRHIKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRF 695

Query: 124 GYLYLMEHKSE--ALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQS 183
            ++Y +  + E   L  F    A ++N  + ++ +++ DRG EY +     +    GI +
Sbjct: 696 QWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITA 755

Query: 184 QLSAPGTPQQNGVSEKRNRTLLDMVRSMSYAQ-LPSSFWGYAVETAVHILNNVSS 224
             +     + +GV+E+ NRTLL+  R++ +   LP+  W  AVE +  I N++ S
Sbjct: 756 CYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc06g0162361 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 9.4e-173
Identity = 302/322 (93.79%), Postives = 307/322 (95.34%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDR GRLVKNGLLN+LKD SLPPCESCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRHLTEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHK 120
           GKMTKR  T K YRAKEPLELIHSDLCGPMNVK RGGFEYFISFIDDYSRYGYLYLMEHK
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SEALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQN 180
           SEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 GVSEKRNRTLLDMVRS-MSYAQLPSSFWGYAVETAVHILNNVSSKSVSETPFVLWRGSKP 240
           GVSE+RNRTLLDMVRS MSYAQLPSSFWGYAVETAVHILNNV SKSVSETPF LWRG KP
Sbjct: 509 GVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKP 568

Query: 241 SLSHFIIWGCPAHVLVTNPKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 300
           SLSHF IWGCPAHVLVTNPKKLE RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL
Sbjct: 569 SLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 628

Query: 301 EEDHMRDHKPRSKLILNEATDE 322
           EEDHMR+HKPRSKL+L+EATDE
Sbjct: 629 EEDHMRNHKPRSKLVLSEATDE 650

[Close]

BLAST of Cmc06g0162361 vs. ExPASy TrEMBL
Match: A0A5D3CPW6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001710 PE=4 SV=1)

HSP 1 Score: 607.8 bits (1566), Expect = 2.6e-170
Identity = 295/296 (99.66%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 26  RLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTKRHLTEKRYRAKEPLELIHSD 85
           +LGHINLDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTKRHLTEKRYRAKEPLELIHSD
Sbjct: 127 KLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTKRHLTEKRYRAKEPLELIHSD 186

Query: 86  LCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL 145
           LCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
Sbjct: 187 LCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL 246

Query: 146 RSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVRSMSYAQLPSS 205
           RSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVRSMSYAQLPSS
Sbjct: 247 RSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVRSMSYAQLPSS 306

Query: 206 FWGYAVETAVHILNNVSSKSVSETPFVLWRGSKPSLSHFIIWGCPAHVLVTNPKKLELRS 265
           FWGYAVETAVHILNNVSSKSVSETPFVLWRGSKPSLSHFIIWGCPAHVLVTNPKKLELRS
Sbjct: 307 FWGYAVETAVHILNNVSSKSVSETPFVLWRGSKPSLSHFIIWGCPAHVLVTNPKKLELRS 366

Query: 266 RLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLILNEATDE 322
           RLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLILNEATDE
Sbjct: 367 RLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLILNEATDE 422

[Close]

BLAST of Cmc06g0162361 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 1.3e-169
Identity = 297/322 (92.24%), Postives = 304/322 (94.41%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDR GRLVK+GLLN+LKD SLPPCESCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRHLTEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHK 120
           GKMTKR  T K YRAKEPLELIHSDLCGPMNVK RG FEYFISFIDDYSRYGYLYLMEHK
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SEALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQN 180
           SEALEKFKEYK EVENLLSKKIKI RSDRG EYMDL FQDYMIEHGIQSQLSAPGTPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 GVSEKRNRTLLDMVRS-MSYAQLPSSFWGYAVETAVHILNNVSSKSVSETPFVLWRGSKP 240
           GVSE+RNRTLLDMVRS MSYAQLPSSFWGYAVETAVHILNNV SKSVSETPF LWRG KP
Sbjct: 509 GVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKP 568

Query: 241 SLSHFIIWGCPAHVLVTNPKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 300
           SLSHF IWGCPAHVLVTNPKKLE RSRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFL
Sbjct: 569 SLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFL 628

Query: 301 EEDHMRDHKPRSKLILNEATDE 322
           EEDHMR+HKPRSKL+L+EATDE
Sbjct: 629 EEDHMRNHKPRSKLVLSEATDE 650

[Close]

BLAST of Cmc06g0162361 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 2.9e-166
Identity = 291/322 (90.37%), Postives = 298/322 (92.55%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLE 60
           MFRTANTQNKRQRIS NNNTYLWHLRLGHINLDR GRLVKNGLLN+L+DDSLPPCESCLE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  GKMTKRHLTEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHK 120
           GKMTKR  T K YRAKEPLELIHSDLCGPMNVK  GGFEYFISFIDDYS YGYLYL+EHK
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHK 420

Query: 121 SEALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQN 180
           SEALEKFKEYK EVENLLSKKIKILRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQN
Sbjct: 421 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 480

Query: 181 GVSEKRNRTLLDMVRS-MSYAQLPSSFWGYAVETAVHILNNVSSKSVSETPFVLWRGSKP 240
           GVSE+RNRTLLDMV S MSY QLPSSFWGYAVETAVHILNNV SK+V ETPF LWRG KP
Sbjct: 481 GVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVETAVHILNNVPSKNVFETPFELWRGRKP 540

Query: 241 SLSHFIIWGCPAHVLVTNPKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 300
           SLSHF IW CP HVLVTNPKKLE RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATF 
Sbjct: 541 SLSHFRIWVCPVHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFF 600

Query: 301 EEDHMRDHKPRSKLILNEATDE 322
           EEDHMRDHKPR KL+L+EATDE
Sbjct: 601 EEDHMRDHKPRRKLVLSEATDE 622

[Close]

BLAST of Cmc06g0162361 vs. ExPASy TrEMBL
Match: A0A5A7VGC7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00530 PE=4 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 1.8e-163
Identity = 288/322 (89.44%), Postives = 298/322 (92.55%), Query Frame = 0


Query: 1   MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLE 60
           MFRTANTQNKRQRISPNN TYLWHLRLGHINLD+ GRLVKNGLLN+L+DDSLPPCES LE
Sbjct: 182 MFRTANTQNKRQRISPNNGTYLWHLRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLE 241

Query: 61  GKMTKRHLTEKRYRAKEPLELIHSDLCGPMNVKVRGGFEYFISFIDDYSRYGYLYLMEHK 120
           GKMTKR    K YRAKEPLELIHSDL GPMNVK R GFEYFISFIDDYSRYGYLYLMEHK
Sbjct: 242 GKMTKRPFIGKGYRAKEPLELIHSDLYGPMNVKAREGFEYFISFIDDYSRYGYLYLMEHK 301

Query: 121 SEALEKFKEYKAEVENLLSKKIKILRSDRGREYMDLRFQDYMIEHGIQSQLSAPGTPQQN 180
           SEALEK KEY+ EVENLLS+KIKILRSDRG EYMDLRFQDYMIEHGIQSQLSA GTPQQN
Sbjct: 302 SEALEKLKEYETEVENLLSEKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSALGTPQQN 361

Query: 181 GVSEKRNRTLLDMVRS-MSYAQLPSSFWGYAVETAVHILNNVSSKSVSETPFVLWRGSKP 240
           GVSE+RNRTLLDMVRS MSYAQ PSSFWGYAVETAVHILNNV SKSVSE PF LWRG KP
Sbjct: 362 GVSERRNRTLLDMVRSMMSYAQFPSSFWGYAVETAVHILNNVPSKSVSEPPFELWRGRKP 421

Query: 241 SLSHFIIWGCPAHVLVTNPKKLELRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL 300
           SLSHF IWGCP H+LVTNPKKLE RSRLCQFVGYPK+TRGGLFFDPQENRVFVSTNATFL
Sbjct: 422 SLSHFRIWGCPVHMLVTNPKKLEPRSRLCQFVGYPKDTRGGLFFDPQENRVFVSTNATFL 481

Query: 301 EEDHMRDHKPRSKLILNEATDE 322
           EEDHMRDHKPRSKL+LNEAT+E
Sbjct: 482 EEDHMRDHKPRSKLVLNEATNE 503

[Close]

BLAST of Cmc06g0162361 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-09
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 18  NNTYLWHLRLGHINLDRFGRLVKNGLLNELKDDSLPPCESCLEGKMTKRHLTEKRYRAKE 77
           + T LWH RL H++      LVK G L+  K  SL  CE C+ GK  + + +  ++  K 
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126

Query: 78  PLELIHSDLCGPMNV 93
           PL+ +HSDL G  +V
Sbjct: 127 PLDYVHSDLWGAPSV 141

[Close]

BLAST of Cmc06g0162361 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.3e-05
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 187 NRTLLDMVRSM-SYAQLPSSFWGYAVETAVHILNNVSSKSVS-ETPFVLWRGSKPSLSHF 246
           NRT+++ VRSM     LP +F   A  TAVHI+N   S +++   P  +W  S P+ S+ 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 247 IIWGCPAHV 254
             +GC A++
Sbjct: 62  RRFGCVAYI 70

The following BLAST results are available for this feature:

BLAST of Cmc06g0162361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	1.9e-172	93.79	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
TYK13967.1	5.3e-170	99.66	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	2.6e-169	92.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	6.0e-166	90.37	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0065386.1	3.7e-163	89.44	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0162361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.5e-54	38.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.7e-42	34.55	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.2e-34	30.74	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.2e-33	29.68	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q07791	3.6e-20	29.79	Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc06g0162361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	9.4e-173	93.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3CPW6	2.6e-170	99.66	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G0017...	[more]
A0A5A7T2V9	1.3e-169	92.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	2.9e-166	90.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VGC7	1.8e-163	89.44	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00530...	[more]

BLAST of Cmc06g0162361 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	3.8e-09	38.67	Gag-Pol-related retrotransposon family protein	[more]
ATMG00710.1	3.3e-05	37.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 120..140
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 19..302
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 76..177 e-value: 2.5E-13 score: 50.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 74..238 score: 22.625793
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 16..63 e-value: 3.9E-12 score: 45.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 69..246 e-value: 5.1E-38 score: 132.3
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 72..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0162361.1	Cmc06g0162361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding