Cmc06g0162231 (gene) Melon (Charmono) v1.1

Overview
NameCmc06g0162231
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
LocationCMiso1.1chr06: 10964299 .. 10966775 (-)
RNA-Seq ExpressionCmc06g0162231
SyntenyCmc06g0162231
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCCATGCCATTTTGCCATTGTTCTGTCAGCCACACACTTATTAACTTTCAACAAAACTTACACTTATCTTTGTAGACCGATGAAAATATATAGATGGTAGGCTTTTCAACTGAAAATAAGTTTCAGCCCATTCCTCCTCCATTGATGGCGAGCTTGGGAGGCTTCTTTTAAATCTTCTTCCTTCATACTACGACAACACCCAAAAAAACATCTTCCTTTTAAATTTCTTCCTTTAGTTTCTCTTCCTTTTAAGCCTTCTTCCTTCACCGACTTCTTCCTTCACGGTAGTTCTCTCGTAAAATCTCAATCTCCCTATTTTTTTTCTTTGTTCGATTTATATTTCCACATATTTACCTAAATATCTTAGTATATATTTTTTTCTTTTCTTTTGTTTAATCTATATTTCCAATATTTTTACGAAAATATCTTAAAATATTTTTCATTAAATTTTTTTTTCGTTTTTCATTTTCCATAAAAATTTTAAAAATATTTTTCATAAAAATCTTAAAAGGATTCACCTATATCTTCGCATTATATTATTTATTTTTGTTAAATTTATTTTTTAAATTATTTACATAAATTTTAACTAGATTTTCGTTTTATCTTTACAGGTCAGAGTCATGGTGATTGGTTGTATCTTTGCCAAGTATTACTCGGTGTGAGCCCACTTGCTGAACAAATCAGGGGTTTGAGGTTGAGTTTAACATGGCTGGGGGTAGAGTTTTCTGGATTGGCTGACGATGCCGATGAGCAAACTATCACAAGATATGCACGAGCATATATTTTACAGTTGATGGGTGAGAGTATATTCGCAGATAAATCAACTTGTTATGTGCACCTAATATTCTTACCATTCTTATCTAATATGCACCACACGTCGCAATATTCGTGGAGTGGAGCCTGTTTAGCATGGTTGTATAGATAATTATGCAAGACATCCAAACAAGGTATTCGTGAAATTGTTGGACCACTAATATTGTTACAATTATGGGCTTGGAAACGATTCCCAATAGTTGCTCCACAACTCCTGCATGTTAATGCTCATCAATTACACGGTCGAGCTTATGGTTCAAGGTATGCTATTTCAATTTAATTTTGATTAACAATAACTTTTTATACATAGTACATTTAAAATCTAAAATATTAGTTGAACAATACAGATGAAGAGATCAATTTTGTGTGACCAAGTTGGCTACACATGTAGTCTCTAAGTATAGATACATGTTTGATCTTCTTCAACCTGATCAAGTACGTCTTGCTAAACTTGAAGTTCAAGTTCCATATTATTTGTTTCATAGAATATGTTGTGTTTCAAATTATCTGGGAGCCATACAAAGCTGTCATAGATAGTTTGCCACATTTATGTACGAACGGTTACGACATATGGCGGACGATTAGTCCTCTTATATGTTTCTACATTGGTGAGTAGCATCATCCTGACAAAACACTTGGACAGTTTGATATTCAACAAGATGTTCCACGTGGTTGTAATACTAAACCACTGTTGCACGACATTGACCTGAGGACTGCTGATTGGTTAGATAGAGTTGCTCATTTAGTGATGCGATGGCTAAATCGCAGAAGGTTAAGCTACAGGACCTCCAATTGGGCAATTTGATACGGATGTAACTCAAGAATACATCCATTGGTATAAAAACATTACCAGGCTCTATATCACCCAACCGAGAGCTGCTGTAGGTCATCTGGAACACATTTAAATATTGTATAATTATTTTTAGTGCAAATTTATTTTCAATGATTTCTAATTCATTTTAATATTTCACAGAGATTAAACAAAAGTAGACTTCGAGTTGTTGCAGATGATCCAAGGTCCTAAATATATGCAATGATAACGAGCAGTACATCGATAGCATACACTATATGTATGATGTACCTATTGTACCTGCTCCAGTTCAAAGGAGACGTACTCTAGTGCAAAAGCTTGATGAATTGGAAGAAGTTGACCAAAACGTGGAAGAAGTGCCTCCTATCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAATGATGATGATGTCGGCGTTTGGAACGAGATATTATTATCCAGGAGTTGGTCAATCGTCAGGCTTCGGAACATGATATTACAATTTAGAGGCAAGTCCATCATCATCAAACTTTGGACAAGAATACTATGATTTAGGGACCAATCCATCATCTTCATACATGCATGGTCATGGATGCAGTCGTGGAGAACATAACGAATATTTATACTACGAAGCGCCCGCAGTGGTACCCGATGAACCAAATGAGCAACAACAACAAGAGAATCAGAAGGAACTACAACAACAAAGAGTGCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTCCAAGTTGTGGAACACATTGATTTTTTTCATTAAATGAAAATTGTTAAATTATCGTATTAGACATTCTACTTTATATTTAATTATTATTCAATCACAAGCAATTACTAAAAATTTAC

mRNA sequence

TGGCCATGCCATTTTGCCATTGTTCTGTCAGCCACACACTTATTAACTTTCAACAAAACTTACACTTATCTTTGTAGACCGATGAAAATATATAGATGGTAGGCTTTTCAACTGAAAATAAGTTTCAGCCCATTCCTCCTCCATTGATGGCGAGCTTGGGAGGCTTCTTTTAAATCTTCTTCCTTCATACTACGACAACACCCAAAAAAACATCTTCCTTTTAAATTTCTTCCTTTAGTTTCTCTTCCTTTTAAGCCTTCTTCCTTCACCGACTTCTTCCTTCACGGTCAGAGTCATGGTGATTGGTTGTATCTTTGCCAAGTATTACTCGGTGTGAGCCCACTTGCTGAACAAATCAGGGGTTTGAGGTTGAGTTTAACATGGCTGGGGGTAGAGTTTTCTGGATTGGCTGACGATGCCGATGAGCAAACTATCACAAGATATGCACGAGCATATATTTTACAGTTGATGGGTGAGAGTATATTCGCAGATAAATCAACTTGTTATGTGCACCTAATATTCTTACCATTCTTATCTAATATGCACCACACGTCGCAATATTCGTGGAGTGGAGCCTGTTTAGCATGGTTGTATAGATAATTATGCAAGACATCCAAACAAGGTATTCGTGAAATTGTTGGACCACTAATATTGTTACAATTATGGGCTTGGAAACGATTCCCAATAGTTGCTCCACAACTCCTGCATGTTAATGCTCATCAATTACACGGTCGAGCTTATGGTTCAAGATGAAGAGATCAATTTTGTGTGACCAAGTTGGCTACACATGTAGTCTCTAAGTATAGATACATGTTTGATCTTCTTCAACCTGATCAATTTGATATTCAACAAGATGTTCCACGTGGTTGTAATACTAAACCACTGTTGCACGACATTGACCTGAGGACTGCTGATTGGTTAGATAGAGTTGCTCATTTAGTGATGCGATGGCTAAATCGCAGAAGGTTAAGCTACAGGACCTCCAATTGGGCAATTTGATACGGATGTAACTCAAGAATACATCCATTGGTATAAAAACATTACCAGGCTCTATATCACCCAACCGAGAGCTGCTGTAGAGATTAAACAAAAGTAGACTTCGAGTTGTTGCAGATGATCCAAGGTCCTAAATATATGCAATGATAACGAGCAGTACATCGATAGCATACACTATATGTATGATGTACCTATTGTACCTGCTCCAGTTCAAAGGAGACGTACTCTAGTGCAAAAGCTTGATGAATTGGAAGAAGTTGACCAAAACGTGGAAGAAGTGCCTCCTATCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAATGATGATGATGTCGGCGTTTGGAACGAGATATTATTATCCAGGAGTTGGTCAATCGTCAGGCTTCGGAACATGATATTACAATTTAGAGGCAAGTCCATCATCATCAAACTTTGGACAAGAATACTATGATTTAGGGACCAATCCATCATCTTCATACATGCATGGTCATGGATGCAGTCGTGGAGAACATAACGAATATTTATACTACGAAGCGCCCGCAGTGGTACCCGATGAACCAAATGAGCAACAACAACAAGAGAATCAGAAGGAACTACAACAACAAAGAGTGCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTCCAAGTTGTGGAACACATTGATTTTTTTCATTAAATGAAAATTGTTAAATTATCGTATTAGACATTCTACTTTATATTTAATTATTATTCAATCACAAGCAATTACTAAAAATTTAC

Coding sequence (CDS)

ATGTTTGATCTTCTTCAACCTGATCAATTTGATATTCAACAAGATGTTCCACGTGGTTGTAATACTAAACCACTGTTGCACGACATTGACCTGAGGACTGCTGATTGGTTAGATAGAGTTGCTCATTTAGTGATGCGATGGCTAAATCGCAGAAGGTTAAGCTACAGGACCTCCAATTGGGCAATTTGA

Protein sequence

MFDLLQPDQFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRRLSYRTSNWAI
Homology
[Close]
BLAST of Cmc06g0162231 vs. NCBI nr
Match: TYK14590.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 7.6e-17
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 1   MFDLLQPDQFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRRLS 55
           MFDLLQP QF IQQ VPR CNT+PLLH+IDLRTADW DRVAHLVMRW NRRR +
Sbjct: 509 MFDLLQPSQFGIQQAVPRDCNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFT 562

[Close]
BLAST of Cmc06g0162231 vs. NCBI nr
Match: KAA0051098.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK02687.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 9   QFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRRLS 55
           QF IQQDVP GCNT+PLLHDIDLRTADW DRVAHLVMRWLNRRR +
Sbjct: 186 QFGIQQDVPHGCNTEPLLHDIDLRTADWSDRVAHLVMRWLNRRRFT 231

[Close]
BLAST of Cmc06g0162231 vs. NCBI nr
Match: KAA0051227.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 7.9e-14
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 9  QFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRRLS 55
          QF IQQ VP GCNTKPLLHDIDLRT DW DRVAHL+MRWLNRRR +
Sbjct: 22 QFGIQQAVPHGCNTKPLLHDIDLRTVDWSDRVAHLMMRWLNRRRFT 67

[Close]
BLAST of Cmc06g0162231 vs. NCBI nr
Match: KAA0025799.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK09657.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-13
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 9   QFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRR 53
           QF IQQDVPRGCN +PLLHDI+LRTADWLD+VAHLVMRW+N +R
Sbjct: 243 QFGIQQDVPRGCNIEPLLHDINLRTADWLDKVAHLVMRWINHKR 286

[Close]
BLAST of Cmc06g0162231 vs. NCBI nr
Match: KAA0050311.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK03528.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 6.7e-13
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 5   LQPDQFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRRLS 55
           + P++F IQQ VPR CNT+ LLH+IDLRTADWLDRVAHLVMRW NRRR +
Sbjct: 67  IHPNKFGIQQAVPRDCNTESLLHNIDLRTADWLDRVAHLVMRWHNRRRFT 116

[Close]
BLAST of Cmc06g0162231 vs. ExPASy TrEMBL
Match: A0A5D3CT32 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00900 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-17
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 1   MFDLLQPDQFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRRLS 55
           MFDLLQP QF IQQ VPR CNT+PLLH+IDLRTADW DRVAHLVMRW NRRR +
Sbjct: 509 MFDLLQPSQFGIQQAVPRDCNTEPLLHNIDLRTADWSDRVAHLVMRWHNRRRFT 562

[Close]
BLAST of Cmc06g0162231 vs. ExPASy TrEMBL
Match: A0A5A7U731 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00130 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 9   QFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRRLS 55
           QF IQQDVP GCNT+PLLHDIDLRTADW DRVAHLVMRWLNRRR +
Sbjct: 186 QFGIQQDVPHGCNTEPLLHDIDLRTADWSDRVAHLVMRWLNRRRFT 231

[Close]
BLAST of Cmc06g0162231 vs. ExPASy TrEMBL
Match: A0A5A7U9Y2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00310 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.8e-14
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 9  QFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRRLS 55
          QF IQQ VP GCNTKPLLHDIDLRT DW DRVAHL+MRWLNRRR +
Sbjct: 22 QFGIQQAVPHGCNTKPLLHDIDLRTVDWSDRVAHLMMRWLNRRRFT 67

[Close]
BLAST of Cmc06g0162231 vs. ExPASy TrEMBL
Match: A0A5A7SKN5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00580 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 9   QFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRR 53
           QF IQQDVPRGCN +PLLHDI+LRTADWLD+VAHLVMRW+N +R
Sbjct: 243 QFGIQQDVPRGCNIEPLLHDINLRTADWLDKVAHLVMRWINHKR 286

[Close]
BLAST of Cmc06g0162231 vs. ExPASy TrEMBL
Match: A0A5A7U9V2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00180 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.2e-13
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 5   LQPDQFDIQQDVPRGCNTKPLLHDIDLRTADWLDRVAHLVMRWLNRRRLS 55
           + P++F IQQ VPR CNT+ LLH+IDLRTADWLDRVAHLVMRW NRRR +
Sbjct: 67  IHPNKFGIQQAVPRDCNTESLLHNIDLRTADWLDRVAHLVMRWHNRRRFT 116

The following BLAST results are available for this feature:
BLAST of Cmc06g0162231 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14590.17.6e-1781.48mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0051098.14.2e-1586.96serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0051227.17.9e-1482.61mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0025799.12.3e-1381.82serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0050311.16.7e-1374.00mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of Cmc06g0162231 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc06g0162231 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CT323.7e-1781.48Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7U7312.0e-1586.96Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7U9Y23.8e-1482.61Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7SKN51.1e-1381.82Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7U9V23.2e-1374.00Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of Cmc06g0162231 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc06g0162231.1Cmc06g0162231.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
molecular_function GO:0008270 zinc ion binding