Cmc06g0161841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0161841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 10468591 .. 10469208 (-)
RNA-Seq Expression	Cmc06g0161841
Synteny	Cmc06g0161841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGACAAATTTATCTACTATAAGACTAGGTAGGTTATGTACTATCATATGCCTATACTTAGATGACATGTTAATCTTTGGATCAAACATGCACGTCATAAATGATGTAAAATCTATGTTGAGTGCAATATTTGACATGAAAGACTTAGACAAAGCTGATGTAATCTTAGGCATCAAAATTATCAGAACTGAAAATGAAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTTTAAAGAAGTACAACTACTTCGAAAGTAAACCAACTTGTACACCTTATGACTCTAGTGTTAAATTATTCAAGAACACTAGTGACAATGTTAACCAATCCGAGTATGCTAGTATCATAAGTAGTTTAAGGTATGTTGTTGATTGCATTAGACCAGACATAGCTTACGTCATAGGATTACTATGTAGGTTTACCAGAAAACCTAGCCTAGAACACTGGAATACAATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGACTACATTATAAAAAGTTTCTTGCTTTACTTGAAGGTTATAACAATGCTGATTGGAACTCCCTCTCAAATGACTCAAAGGCTACAAGTGGCTATATTTTTAATATAGCATAA

mRNA sequence

ATGAGAGTGACAAATTTATCTACTATAAGACTAGGTAGGTTATGTACTATCATATGCCTATACTTAGATGACATGTTAATCTTTGGATCAAACATGCACGTCATAAATGATGTAAAATCTATGTTGAGTGCAATATTTGACATGAAAGACTTAGACAAAGCTGATGTAATCTTAGGCATCAAAATTATCAGAACTGAAAATGAAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTTTAAAGAAGTACAACTACTTCGAAAGTAAACCAACTTGTACACCTTATGACTCTAGTGTTAAATTATTCAAGAACACTAGTGACAATGTTAACCAATCCGAGTATGCTAGTATCATAAGTAGTTTAAGGTATGTTGTTGATTGCATTAGACCAGACATAGCTTACGTCATAGGATTACTATGTAGGTTTACCAGAAAACCTAGCCTAGAACACTGGAATACAATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGACTACATTATAAAAAGTTTCTTGCTTTACTTGAAGGTTATAACAATGCTGATTGGAACTCCCTCTCAAATGACTCAAAGGCTACAAGTGGCTATATTTTTAATATAGCATAA

Coding sequence (CDS)

ATGAGAGTGACAAATTTATCTACTATAAGACTAGGTAGGTTATGTACTATCATATGCCTATACTTAGATGACATGTTAATCTTTGGATCAAACATGCACGTCATAAATGATGTAAAATCTATGTTGAGTGCAATATTTGACATGAAAGACTTAGACAAAGCTGATGTAATCTTAGGCATCAAAATTATCAGAACTGAAAATGAAATTTTCTTAGATCAATCTCATTACATAGAAAAGATTTTAAAGAAGTACAACTACTTCGAAAGTAAACCAACTTGTACACCTTATGACTCTAGTGTTAAATTATTCAAGAACACTAGTGACAATGTTAACCAATCCGAGTATGCTAGTATCATAAGTAGTTTAAGGTATGTTGTTGATTGCATTAGACCAGACATAGCTTACGTCATAGGATTACTATGTAGGTTTACCAGAAAACCTAGCCTAGAACACTGGAATACAATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGACTACATTATAAAAAGTTTCTTGCTTTACTTGAAGGTTATAACAATGCTGATTGGAACTCCCTCTCAAATGACTCAAAGGCTACAAGTGGCTATATTTTTAATATAGCATAA

Protein sequence

MRVTNLSTIRLGRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFLDQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRPDIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLSNDSKATSGYIFNIA

Homology

[Close]

BLAST of Cmc06g0161841 vs. NCBI nr
Match: KAA0032842.1 (hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK21198.1 hypothetical protein E5676_scaffold359G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 330.1 bits (845), Expect = 1.4e-86
Identity = 162/194 (83.51%), Postives = 173/194 (89.18%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GRLC IICLY+DDMLIFGSN+HVINDVKSML+  FDMKDL +ADVILGIKI R EN I L
Sbjct: 78  GRLCIIICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISL 137

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQSHYIEKILKKYNYF+SKP CTPYDSSVKLFKNT D+VNQSEYASII SLRY  DC RP
Sbjct: 138 DQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRP 197

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
           DIAY +GLLCRFT +PSLEHWN IERVMRYLKK QNLGLHY KF A+LEGYN+ADWNS S
Sbjct: 198 DIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRS 257

Query: 192 NDSKATSGYIFNIA 206
           +DSKATSGYIFNIA
Sbjct: 258 DDSKATSGYIFNIA 271

[Close]

BLAST of Cmc06g0161841 vs. NCBI nr
Match: KAA0060459.1 (hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK18544.1 hypothetical protein E5676_scaffold119G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 1.8e-86
Identity = 162/194 (83.51%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GRLC IICLY+DDMLIFGSN+HVINDVKSMLS  FDMKDL +ADVILGIKI RTEN IFL
Sbjct: 78  GRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEADVILGIKITRTENGIFL 137

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQSHYIEK LKKYNYF+SKPTCTPYDSSVKLFKNT D+VNQ+EYASII SLRY VD  RP
Sbjct: 138 DQSHYIEKTLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQTEYASIIGSLRYAVDYTRP 197

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
            IAY +GLLCRFT +PSLEHWN IERVMRYLKKTQNLGLHY KF  +LEGY++ADWNSL 
Sbjct: 198 SIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSDADWNSLL 257

Query: 192 NDSKATSGYIFNIA 206
           +DSKATSGYIFNIA
Sbjct: 258 DDSKATSGYIFNIA 271

[Close]

BLAST of Cmc06g0161841 vs. NCBI nr
Match: TYK06419.1 (hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 328.9 bits (842), Expect = 3.0e-86
Identity = 160/194 (82.47%), Postives = 178/194 (91.75%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GRLC IICLY+DD+LIFGSN++VINDVKSMLS  FDMK+LD+ADVILGIKI RT+N I L
Sbjct: 125 GRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELDEADVILGIKITRTKNGISL 184

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQSHYIEKILKKYNYF+SKPTCTPYDSSVKLF+NT D+VNQSEYASII SLRY  DC RP
Sbjct: 185 DQSHYIEKILKKYNYFDSKPTCTPYDSSVKLFENTGDSVNQSEYASIIGSLRYAADCTRP 244

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
           DIAY +GLLCRFT +PSLEHWNTIER++RYLKKTQNLGLHY KF A+LEGY +ADWNSLS
Sbjct: 245 DIAYAVGLLCRFTSRPSLEHWNTIERIIRYLKKTQNLGLHYNKFPAVLEGYIDADWNSLS 304

Query: 192 NDSKATSGYIFNIA 206
           ++SKATSGYIFNIA
Sbjct: 305 DNSKATSGYIFNIA 318

[Close]

BLAST of Cmc06g0161841 vs. NCBI nr
Match: KAA0058878.1 (putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.3e-85
Identity = 158/194 (81.44%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GRLC IICLY+DDML F SN+HVINDVKSMLS  FDMKDL +AD+ILGIKI RT+N I L
Sbjct: 194 GRLCIIICLYVDDMLSFVSNLHVINDVKSMLSVNFDMKDLGEADIILGIKITRTKNGISL 253

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQS+YIEKILKKYNYF+SKP CTPYDSSVKLFKNT DNVNQSEY SII SLRYV DC RP
Sbjct: 254 DQSYYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDNVNQSEYTSIIGSLRYVADCTRP 313

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
           DIAY +GLLCRFT +P LEHWN IER+MRYLKKTQNLGLHY KF  +LEGYN+ DWNSLS
Sbjct: 314 DIAYAVGLLCRFTSRPCLEHWNAIERIMRYLKKTQNLGLHYNKFSTVLEGYNDVDWNSLS 373

Query: 192 NDSKATSGYIFNIA 206
           +DSKATSGYIFNIA
Sbjct: 374 DDSKATSGYIFNIA 387

[Close]

BLAST of Cmc06g0161841 vs. NCBI nr
Match: TYK00058.1 (hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.3e-85
Identity = 161/193 (83.42%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GR+C IICLY+DDMLIFGSN+H+INDVKSMLSA FDMKDL +ADVILGIKI RTEN I L
Sbjct: 78  GRVCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISL 137

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQSHYIEKILKKYNYFESKP CTPYDSSVKLFKNT D+VNQSEYASII SLRY  DC RP
Sbjct: 138 DQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRP 197

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
           DIAY IGLLCRFT + SLEHWN IERVMRYLKKTQNLGLHY KF  +LEGY +ADWNSLS
Sbjct: 198 DIAYTIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLS 257

Query: 192 NDSKATSGYIFNI 205
           +DSKA SGYIF I
Sbjct: 258 DDSKAISGYIFKI 270

[Close]

BLAST of Cmc06g0161841 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-30
Identity = 74/198 (37.37%), Postives = 116/198 (58.59%), Query Frame = 0


Query: 17   IICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKII--RTENEIFLDQS 76
            I+ LY+DDMLI G +  +I  +K  LS  FDMKDL  A  ILG+KI+  RT  +++L Q 
Sbjct: 1004 ILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQE 1063

Query: 77   HYIEKILKKYNYFESKPTCTPYDSSVKLFK-------NTSDNVNQSEYASIISSLRYVVD 136
             YIE++L+++N   +KP  TP    +KL K           N+ +  Y+S + SL Y + 
Sbjct: 1064 KYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMV 1123

Query: 137  CIRPDIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADW 196
            C RPDIA+ +G++ RF   P  EHW  ++ ++RYL+ T    L +     +L+GY +AD 
Sbjct: 1124 CTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADM 1183

Query: 197  NSLSNDSKATSGYIFNIA 206
                ++ K+++GY+F  +
Sbjct: 1184 AGDIDNRKSSTGYLFTFS 1201

[Close]

BLAST of Cmc06g0161841 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-25
Identity = 67/190 (35.26%), Postives = 108/190 (56.84%), Query Frame = 0


Query: 18   ICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFLDQSHYI 77
            + LY+DD++I   +M  +N+ K  L   F M DL++    +GI+I   E++I+L QS Y+
Sbjct: 1084 VLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYV 1143

Query: 78   EKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRPDIAYVI 137
            +KIL K+N        TP  S +      SD    +   S+I  L Y++ C RPD+   +
Sbjct: 1144 KKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAV 1203

Query: 138  GLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLAL---LEGYNNADWNSLSNDS 197
             +L R++ K + E W  ++RV+RYLK T ++ L +KK LA    + GY ++DW     D 
Sbjct: 1204 NILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDR 1263

Query: 198  KATSGYIFNI 205
            K+T+GY+F +
Sbjct: 1264 KSTTGYLFKM 1273

[Close]

BLAST of Cmc06g0161841 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.4e-23
Identity = 65/200 (32.50%), Postives = 111/200 (55.50%), Query Frame = 0


Query: 4    TNLSTIRLGRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKII 63
            T+L  ++ GR    + +Y+DD+LI G++  ++      LS  F +K+ +     LGI+  
Sbjct: 1116 TSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAK 1175

Query: 64   RTENEIFLDQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNV-NQSEYASIISSL 123
            R    + L Q  Y   +L + N   +KP  TP  +S KL  ++   + + +EY  I+ SL
Sbjct: 1176 RVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSL 1235

Query: 124  RYVVDCIRPDIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLAL-LEG 183
            +Y+    RPD++Y +  L ++   P+ +HWN ++RV+RYL  T + G+  KK   L L  
Sbjct: 1236 QYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHA 1295

Query: 184  YNNADWNSLSNDSKATSGYI 202
            Y++ADW   ++D  +T+GYI
Sbjct: 1296 YSDADWAGDTDDYVSTNGYI 1314

[Close]

BLAST of Cmc06g0161841 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-22
Identity = 67/200 (33.50%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 4    TNLSTIRLGRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKII 63
            T+L  ++ G+    + +Y+DD+LI G++  ++++    LS  F +KD ++    LGI+  
Sbjct: 1133 TSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAK 1192

Query: 64   RTENEIFLDQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNV-NQSEYASIISSL 123
            R    + L Q  YI  +L + N   +KP  TP   S KL   +   + + +EY  I+ SL
Sbjct: 1193 RVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSL 1252

Query: 124  RYVVDCIRPDIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLAL-LEG 183
            +Y+    RPDI+Y +  L +F   P+ EH   ++R++RYL  T N G+  KK   L L  
Sbjct: 1253 QYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHA 1312

Query: 184  YNNADWNSLSNDSKATSGYI 202
            Y++ADW    +D  +T+GYI
Sbjct: 1313 YSDADWAGDKDDYVSTNGYI 1331

[Close]

BLAST of Cmc06g0161841 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.9e-21
Identity = 58/184 (31.52%), Postives = 108/184 (58.70%), Query Frame = 0


Query: 18  ICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFLDQSHYI 77
           + LY+DD+L+ GS+  ++N +   LS+ F MKDL      LGI+I    + +FL Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 78  EKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRPDIAYVI 137
           E+IL      + KP  TP    +    +T+   + S++ SI+ +L+Y+    RPDI+Y +
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAV 122

Query: 138 GLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLAL-LEGYNNADWNSLSNDSKA 197
            ++C+   +P+L  ++ ++RV+RY+K T   GL+  K   L ++ + ++DW   ++  ++
Sbjct: 123 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 182

Query: 198 TSGY 201
           T+G+
Sbjct: 183 TTGF 185

[Close]

BLAST of Cmc06g0161841 vs. ExPASy TrEMBL
Match: A0A5A7SNZ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00010 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.6e-87
Identity = 162/194 (83.51%), Postives = 173/194 (89.18%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GRLC IICLY+DDMLIFGSN+HVINDVKSML+  FDMKDL +ADVILGIKI R EN I L
Sbjct: 78  GRLCIIICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISL 137

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQSHYIEKILKKYNYF+SKP CTPYDSSVKLFKNT D+VNQSEYASII SLRY  DC RP
Sbjct: 138 DQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRP 197

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
           DIAY +GLLCRFT +PSLEHWN IERVMRYLKK QNLGLHY KF A+LEGYN+ADWNS S
Sbjct: 198 DIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRS 257

Query: 192 NDSKATSGYIFNIA 206
           +DSKATSGYIFNIA
Sbjct: 258 DDSKATSGYIFNIA 271

[Close]

BLAST of Cmc06g0161841 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.6e-87
Identity = 162/194 (83.51%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GRLC IICLY+DDMLIFGSN+HVINDVKSMLS  FDMKDL +ADVILGIKI RTEN IFL
Sbjct: 78  GRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEADVILGIKITRTENGIFL 137

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQSHYIEK LKKYNYF+SKPTCTPYDSSVKLFKNT D+VNQ+EYASII SLRY VD  RP
Sbjct: 138 DQSHYIEKTLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQTEYASIIGSLRYAVDYTRP 197

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
            IAY +GLLCRFT +PSLEHWN IERVMRYLKKTQNLGLHY KF  +LEGY++ADWNSL 
Sbjct: 198 SIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSDADWNSLL 257

Query: 192 NDSKATSGYIFNIA 206
           +DSKATSGYIFNIA
Sbjct: 258 DDSKATSGYIFNIA 271

[Close]

BLAST of Cmc06g0161841 vs. ExPASy TrEMBL
Match: A0A5D3C7T6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001210 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.5e-86
Identity = 160/194 (82.47%), Postives = 178/194 (91.75%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GRLC IICLY+DD+LIFGSN++VINDVKSMLS  FDMK+LD+ADVILGIKI RT+N I L
Sbjct: 125 GRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELDEADVILGIKITRTKNGISL 184

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQSHYIEKILKKYNYF+SKPTCTPYDSSVKLF+NT D+VNQSEYASII SLRY  DC RP
Sbjct: 185 DQSHYIEKILKKYNYFDSKPTCTPYDSSVKLFENTGDSVNQSEYASIIGSLRYAADCTRP 244

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
           DIAY +GLLCRFT +PSLEHWNTIER++RYLKKTQNLGLHY KF A+LEGY +ADWNSLS
Sbjct: 245 DIAYAVGLLCRFTSRPSLEHWNTIERIIRYLKKTQNLGLHYNKFPAVLEGYIDADWNSLS 304

Query: 192 NDSKATSGYIFNIA 206
           ++SKATSGYIFNIA
Sbjct: 305 DNSKATSGYIFNIA 318

[Close]

BLAST of Cmc06g0161841 vs. ExPASy TrEMBL
Match: A0A5D3DJH9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00620 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.6e-85
Identity = 158/194 (81.44%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GRLC IICLY+DDML F SN+HVINDVKSMLS  FDMKDL +AD+ILGIKI RT+N I L
Sbjct: 194 GRLCIIICLYVDDMLSFVSNLHVINDVKSMLSVNFDMKDLGEADIILGIKITRTKNGISL 253

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQS+YIEKILKKYNYF+SKP CTPYDSSVKLFKNT DNVNQSEY SII SLRYV DC RP
Sbjct: 254 DQSYYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDNVNQSEYTSIIGSLRYVADCTRP 313

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
           DIAY +GLLCRFT +P LEHWN IER+MRYLKKTQNLGLHY KF  +LEGYN+ DWNSLS
Sbjct: 314 DIAYAVGLLCRFTSRPCLEHWNAIERIMRYLKKTQNLGLHYNKFSTVLEGYNDVDWNSLS 373

Query: 192 NDSKATSGYIFNIA 206
           +DSKATSGYIFNIA
Sbjct: 374 DDSKATSGYIFNIA 387

[Close]

BLAST of Cmc06g0161841 vs. ExPASy TrEMBL
Match: A0A5D3BLQ7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00040 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.6e-85
Identity = 161/193 (83.42%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 12  GRLCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFL 71
           GR+C IICLY+DDMLIFGSN+H+INDVKSMLSA FDMKDL +ADVILGIKI RTEN I L
Sbjct: 78  GRVCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISL 137

Query: 72  DQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRP 131
           DQSHYIEKILKKYNYFESKP CTPYDSSVKLFKNT D+VNQSEYASII SLRY  DC RP
Sbjct: 138 DQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRP 197

Query: 132 DIAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLALLEGYNNADWNSLS 191
           DIAY IGLLCRFT + SLEHWN IERVMRYLKKTQNLGLHY KF  +LEGY +ADWNSLS
Sbjct: 198 DIAYTIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLS 257

Query: 192 NDSKATSGYIFNI 205
           +DSKA SGYIF I
Sbjct: 258 DDSKAISGYIFKI 270

[Close]

BLAST of Cmc06g0161841 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-22
Identity = 58/184 (31.52%), Postives = 108/184 (58.70%), Query Frame = 0


Query: 18  ICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFLDQSHYI 77
           + LY+DD+L+ GS+  ++N +   LS+ F MKDL      LGI+I    + +FL Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 78  EKILKKYNYFESKPTCTPYDSSVKLFKNTSDNVNQSEYASIISSLRYVVDCIRPDIAYVI 137
           E+IL      + KP  TP    +    +T+   + S++ SI+ +L+Y+    RPDI+Y +
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAV 122

Query: 138 GLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLAL-LEGYNNADWNSLSNDSKA 197
            ++C+   +P+L  ++ ++RV+RY+K T   GL+  K   L ++ + ++DW   ++  ++
Sbjct: 123 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 182

Query: 198 TSGY 201
           T+G+
Sbjct: 183 TTGF 185

[Close]

BLAST of Cmc06g0161841 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-16
Identity = 53/189 (28.04%), Postives = 98/189 (51.85%), Query Frame = 0


Query: 14  LCTIICLYLDDMLIFGSNMHVINDVKSMLSAIFDMKDLDKADVILGIKIIRTENEIFLDQ 73
           LC ++  Y+DD++I  +N   ++++KS L + F ++DL      LG++I R+   I + Q
Sbjct: 278 LCVLV--YVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQ 337

Query: 74  SHYIEKILKKYNYFESKPTCTPYDSSVKLFKNT-SDNVNQSEYASIISSLRYVVDCIRPD 133
             Y   +L +      KP+  P D SV    ++  D V+   Y  +I  L Y +   R D
Sbjct: 338 RKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMY-LQITRLD 397

Query: 134 IAYVIGLLCRFTRKPSLEHWNTIERVMRYLKKTQNLGLHYKKFLAL-LEGYNNADWNSLS 193
           I++ +  L +F+  P L H   + +++ Y+K T   GL Y     + L+ +++A + S  
Sbjct: 398 ISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCK 457

Query: 194 NDSKATSGY 201
           +  ++T+GY
Sbjct: 458 DTRRSTNGY 463

The following BLAST results are available for this feature:

BLAST of Cmc06g0161841 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032842.1	1.4e-86	83.51	hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK211...	[more]
KAA0060459.1	1.8e-86	83.51	hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK1854...	[more]
TYK06419.1	3.0e-86	82.47	hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]	[more]
KAA0058878.1	3.3e-85	81.44	putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein...	[more]
TYK00058.1	3.3e-85	83.42	hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0161841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.2e-30	37.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-25	35.26	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	8.4e-23	32.50	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.4e-22	33.50	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	7.9e-21	31.52	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc06g0161841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNZ1	6.6e-87	83.51	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3D4T4	8.6e-87	83.51	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3C7T6	1.5e-86	82.47	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3DJH9	1.6e-85	81.44	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold160...	[more]
A0A5D3BLQ7	1.6e-85	83.42	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]

BLAST of Cmc06g0161841 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	5.6e-22	31.52	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	2.7e-16	28.04	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 16..95 e-value: 1.3E-18 score: 67.5
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 17..202
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 17..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0161841.1	Cmc06g0161841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding