Cmc06g0161011 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0161011
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	CMiso1.1chr06: 9343077 .. 9343541 (-)
RNA-Seq Expression	Cmc06g0161011
Synteny	Cmc06g0161011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTGTTTCTTCTAACTTCTAAGCTTCTTCGTCTGTATACTTCTTTTGGGTACATGGAGGATGCACACCCGGTGTTCGACGAAATTGGTAATCATAATTTCTCTGCACTTGCTTGGAATTCTCTTATTTCTGGATATGCTGAACTTGGTCTTTATGTAGATGCTCTGGCACTTTACTTTCAAACGGTGGAAGAAGGTGTTGAACCTGACCATTTCACTTTTCCTCGTGTGCACAAGGCCTGTGGTGGCATTGGGTCGATTCAAACTGGAGAGGCGGTGCATCGGCATGTTGTTCGTTCTGGCTTTGCTGGACATGTCTTTATCCTCAATGCTTTAGTTGACATGTACTCCAAATGTGGTAGCATTGTGAGGGCTAGGGAAGTGTTTGATCAAATTGTTTATAAGGACATTGTTTCCTGGAACTCAATGCTAACTGGTTACACGCCATGGGCTTCACTTTGA

mRNA sequence

ATGTGGGTGTTTCTTCTAACTTCTAAGCTTCTTCGTCTGTATACTTCTTTTGGGTACATGGAGGATGCACACCCGGTGTTCGACGAAATTGGTAATCATAATTTCTCTGCACTTGCTTGGAATTCTCTTATTTCTGGATATGCTGAACTTGGTCTTTATGTAGATGCTCTGGCACTTTACTTTCAAACGGTGGAAGAAGGTGTTGAACCTGACCATTTCACTTTTCCTCGTGTGCACAAGGCCTGTGGTGGCATTGGGTCGATTCAAACTGGAGAGGCGGTGCATCGGCATGTTGTTCGTTCTGGCTTTGCTGGACATGTCTTTATCCTCAATGCTTTAGTTGACATGTACTCCAAATGTGGTAGCATTGTGAGGGCTAGGGAAGTGTTTGATCAAATTGTTTATAAGGACATTGTTTCCTGGAACTCAATGCTAACTGGTTACACGCCATGGGCTTCACTTTGA

Coding sequence (CDS)

ATGTGGGTGTTTCTTCTAACTTCTAAGCTTCTTCGTCTGTATACTTCTTTTGGGTACATGGAGGATGCACACCCGGTGTTCGACGAAATTGGTAATCATAATTTCTCTGCACTTGCTTGGAATTCTCTTATTTCTGGATATGCTGAACTTGGTCTTTATGTAGATGCTCTGGCACTTTACTTTCAAACGGTGGAAGAAGGTGTTGAACCTGACCATTTCACTTTTCCTCGTGTGCACAAGGCCTGTGGTGGCATTGGGTCGATTCAAACTGGAGAGGCGGTGCATCGGCATGTTGTTCGTTCTGGCTTTGCTGGACATGTCTTTATCCTCAATGCTTTAGTTGACATGTACTCCAAATGTGGTAGCATTGTGAGGGCTAGGGAAGTGTTTGATCAAATTGTTTATAAGGACATTGTTTCCTGGAACTCAATGCTAACTGGTTACACGCCATGGGCTTCACTTTGA

Protein sequence

MWVFLLTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVEEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL

Homology

[Close]

BLAST of Cmc06g0161011 vs. NCBI nr
Match: KAA0058819.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 322.8 bits (826), Expect = 1.6e-84
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MWVFLLTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY 60
           MWVFLLTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY
Sbjct: 1   MWVFLLTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY 60

Query: 61  FQTVEEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC 120
           FQTVEEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC
Sbjct: 61  FQTVEEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC 120

Query: 121 GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL 155
           GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL
Sbjct: 121 GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL 154

[Close]

BLAST of Cmc06g0161011 vs. NCBI nr
Match: TYK11238.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 2.6e-82
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MWVFLLTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY 60
           MWVFLLTSKLLRLYTSFGYMEDAH VFDEIGNHNFSALAWNSLISGYAELGLYVDALALY
Sbjct: 1   MWVFLLTSKLLRLYTSFGYMEDAHQVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY 60

Query: 61  FQTVEEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC 120
           FQTVEEGVEPDHFTFPRV KACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC
Sbjct: 61  FQTVEEGVEPDHFTFPRVLKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC 120

Query: 121 GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL 155
           GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL
Sbjct: 121 GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL 154

[Close]

BLAST of Cmc06g0161011 vs. NCBI nr
Match: XP_031738497.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis sativus] >KGN57280.1 hypothetical protein Csa_009860 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 4.5e-66
Identity = 126/144 (87.50%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVE 65
           ++SKLLRLY SFGYMEDAH VFDE+GN NFSA AWNSLISGYAELGLY DALALYFQ  E
Sbjct: 146 ISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEE 205

Query: 66  EGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVR 125
           EGVEPD+FTFPRV KACGGIGSIQ GEAVHRHVVRSGFAG VF+LNALVDMYSKCG IVR
Sbjct: 206 EGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVR 265

Query: 126 AREVFDQIVYKDIVSWNSMLTGYT 150
           AR+VFDQI YKDIVSWNSMLTGYT
Sbjct: 266 ARKVFDQIEYKDIVSWNSMLTGYT 289

[Close]

BLAST of Cmc06g0161011 vs. NCBI nr
Match: KAA0067680.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK23684.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.2 bits (666), Expect = 5.8e-66
Identity = 126/144 (87.50%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVE 65
           ++SKLLRLY S GYMEDAH VFDE+G  NFSA AWNSLISGYAELGLY DALALYFQ  E
Sbjct: 131 ISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQMEE 190

Query: 66  EGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVR 125
           EGVEPDHFTFPRV KACGGIGSIQ GEAVHRHVVRSGFAG VF+LNALVDMYSKCG IVR
Sbjct: 191 EGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVR 250

Query: 126 AREVFDQIVYKDIVSWNSMLTGYT 150
           AR+VFDQIVYKDIVSWNSMLTGYT
Sbjct: 251 ARKVFDQIVYKDIVSWNSMLTGYT 274

[Close]

BLAST of Cmc06g0161011 vs. NCBI nr
Match: XP_016898932.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo])

HSP 1 Score: 261.2 bits (666), Expect = 5.8e-66
Identity = 126/144 (87.50%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVE 65
           ++SKLLRLY S GYMEDAH VFDE+G  NFSA AWNSLISGYAELGLY DALALYFQ  E
Sbjct: 131 ISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQMEE 190

Query: 66  EGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVR 125
           EGVEPDHFTFPRV KACGGIGSIQ GEAVHRHVVRSGFAG VF+LNALVDMYSKCG IVR
Sbjct: 191 EGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVR 250

Query: 126 AREVFDQIVYKDIVSWNSMLTGYT 150
           AR+VFDQIVYKDIVSWNSMLTGYT
Sbjct: 251 ARKVFDQIVYKDIVSWNSMLTGYT 274

[Close]

BLAST of Cmc06g0161011 vs. ExPASy Swiss-Prot
Match: Q9SB36 (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.5e-52
Identity = 96/143 (67.13%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVE 65
           ++SKL+RLY S GY E AH VFD +   + S  AWNSLISGYAELG Y DA+ALYFQ  E
Sbjct: 129 ISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAE 188

Query: 66  EGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVR 125
           +GV+PD FTFPRV KACGGIGS+Q GEA+HR +V+ GF   V++LNALV MY+KCG IV+
Sbjct: 189 DGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVK 248

Query: 126 AREVFDQIVYKDIVSWNSMLTGY 149
           AR VFD I +KD VSWNSMLTGY
Sbjct: 249 ARNVFDMIPHKDYVSWNSMLTGY 271

[Close]

BLAST of Cmc06g0161011 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-28
Identity = 60/140 (42.86%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 10  LLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVEEGVE 69
           L++ Y S GY+E+A  +FDEI   +   ++WN++ISGYAE G Y +AL L+   ++  V 
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKD--VVSWNAMISGYAETGNYKEALELFKDMMKTNVR 265

Query: 70  PDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVRAREV 129
           PD  T   V  AC   GSI+ G  VH  +   GF  ++ I+NAL+D+YSKCG +  A  +
Sbjct: 266 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 325

Query: 130 FDQIVYKDIVSWNSMLTGYT 150
           F+++ YKD++SWN+++ GYT
Sbjct: 326 FERLPYKDVISWNTLIGGYT 343

[Close]

BLAST of Cmc06g0161011 vs. ExPASy Swiss-Prot
Match: Q9M9E2 (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 59/144 (40.97%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTV- 65
           L +  L ++  FG + DA  VF ++   N    +WN L+ GYA+ G + +A+ LY + + 
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNL--FSWNVLVGGYAKQGYFDEAMCLYHRMLW 190

Query: 66  EEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIV 125
             GV+PD +TFP V + CGGI  +  G+ VH HVVR G+   + ++NAL+ MY KCG + 
Sbjct: 191 VGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVK 250

Query: 126 RAREVFDQIVYKDIVSWNSMLTGY 149
            AR +FD++  +DI+SWN+M++GY
Sbjct: 251 SARLLFDRMPRRDIISWNAMISGY 272

[Close]

BLAST of Cmc06g0161011 vs. ExPASy Swiss-Prot
Match: Q9LUS3 (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.5e-27
Identity = 57/140 (40.71%), Postives = 88/140 (62.86%), Query Frame = 0


Query: 10  LLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVEEGVE 69
           L RLY S   +E A  VFDEI +   + +AW+ +I  YA       AL LY++ +  GV 
Sbjct: 41  LTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVR 100

Query: 70  PDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVRAREV 129
           P  +T+P V KAC G+ +I  G+ +H HV  S FA  +++  ALVD Y+KCG +  A +V
Sbjct: 101 PTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKV 160

Query: 130 FDQIVYKDIVSWNSMLTGYT 150
           FD++  +D+V+WN+M++G++
Sbjct: 161 FDEMPKRDMVAWNAMISGFS 180

[Close]

BLAST of Cmc06g0161011 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 8   SKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVEEG 67
           S LL LYT +G M+DA  VFD + + N   ++WN+LI+G+A       AL L+   + +G
Sbjct: 200 SALLDLYTRYGLMDDAQLVFDALESRN--DVSWNALIAGHARRSGTEKALELFQGMLRDG 259

Query: 68  VEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVRAR 127
             P HF++  +  AC   G ++ G+ VH ++++SG     F  N L+DMY+K GSI  AR
Sbjct: 260 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 319

Query: 128 EVFDQIVYKDIVSWNSMLTGY 149
           ++FD++  +D+VSWNS+LT Y
Sbjct: 320 KIFDRLAKRDVVSWNSLLTAY 338

[Close]

BLAST of Cmc06g0161011 vs. ExPASy TrEMBL
Match: A0A5A7UZ73 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold803G00140 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 7.9e-85
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MWVFLLTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY 60
           MWVFLLTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY
Sbjct: 1   MWVFLLTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY 60

Query: 61  FQTVEEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC 120
           FQTVEEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC
Sbjct: 61  FQTVEEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC 120

Query: 121 GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL 155
           GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL
Sbjct: 121 GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL 154

[Close]

BLAST of Cmc06g0161011 vs. ExPASy TrEMBL
Match: A0A5D3CJ56 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00910 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.3e-82
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MWVFLLTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY 60
           MWVFLLTSKLLRLYTSFGYMEDAH VFDEIGNHNFSALAWNSLISGYAELGLYVDALALY
Sbjct: 1   MWVFLLTSKLLRLYTSFGYMEDAHQVFDEIGNHNFSALAWNSLISGYAELGLYVDALALY 60

Query: 61  FQTVEEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC 120
           FQTVEEGVEPDHFTFPRV KACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC
Sbjct: 61  FQTVEEGVEPDHFTFPRVLKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKC 120

Query: 121 GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL 155
           GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL
Sbjct: 121 GSIVRAREVFDQIVYKDIVSWNSMLTGYTPWASL 154

[Close]

BLAST of Cmc06g0161011 vs. ExPASy TrEMBL
Match: A0A0A0L5M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176270 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.2e-66
Identity = 126/144 (87.50%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVE 65
           ++SKLLRLY SFGYMEDAH VFDE+GN NFSA AWNSLISGYAELGLY DALALYFQ  E
Sbjct: 146 ISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQMEE 205

Query: 66  EGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVR 125
           EGVEPD+FTFPRV KACGGIGSIQ GEAVHRHVVRSGFAG VF+LNALVDMYSKCG IVR
Sbjct: 206 EGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVR 265

Query: 126 AREVFDQIVYKDIVSWNSMLTGYT 150
           AR+VFDQI YKDIVSWNSMLTGYT
Sbjct: 266 ARKVFDQIEYKDIVSWNSMLTGYT 289

[Close]

BLAST of Cmc06g0161011 vs. ExPASy TrEMBL
Match: A0A5D3DJ70 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00500 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.8e-66
Identity = 126/144 (87.50%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVE 65
           ++SKLLRLY S GYMEDAH VFDE+G  NFSA AWNSLISGYAELGLY DALALYFQ  E
Sbjct: 131 ISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQMEE 190

Query: 66  EGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVR 125
           EGVEPDHFTFPRV KACGGIGSIQ GEAVHRHVVRSGFAG VF+LNALVDMYSKCG IVR
Sbjct: 191 EGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVR 250

Query: 126 AREVFDQIVYKDIVSWNSMLTGYT 150
           AR+VFDQIVYKDIVSWNSMLTGYT
Sbjct: 251 ARKVFDQIVYKDIVSWNSMLTGYT 274

[Close]

BLAST of Cmc06g0161011 vs. ExPASy TrEMBL
Match: A0A1S4DSF7 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990382 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.8e-66
Identity = 126/144 (87.50%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVE 65
           ++SKLLRLY S GYMEDAH VFDE+G  NFSA AWNSLISGYAELGLY DALALYFQ  E
Sbjct: 131 ISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQMEE 190

Query: 66  EGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVR 125
           EGVEPDHFTFPRV KACGGIGSIQ GEAVHRHVVRSGFAG VF+LNALVDMYSKCG IVR
Sbjct: 191 EGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVR 250

Query: 126 AREVFDQIVYKDIVSWNSMLTGYT 150
           AR+VFDQIVYKDIVSWNSMLTGYT
Sbjct: 251 ARKVFDQIVYKDIVSWNSMLTGYT 274

[Close]

BLAST of Cmc06g0161011 vs. TAIR 10
Match: AT4G25270.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 204.9 bits (520), Expect = 4.6e-53
Identity = 96/143 (67.13%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVE 65
           ++SKL+RLY S GY E AH VFD +   + S  AWNSLISGYAELG Y DA+ALYFQ  E
Sbjct: 129 ISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAE 188

Query: 66  EGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVR 125
           +GV+PD FTFPRV KACGGIGS+Q GEA+HR +V+ GF   V++LNALV MY+KCG IV+
Sbjct: 189 DGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVK 248

Query: 126 AREVFDQIVYKDIVSWNSMLTGY 149
           AR VFD I +KD VSWNSMLTGY
Sbjct: 249 ARNVFDMIPHKDYVSWNSMLTGY 271

[Close]

BLAST of Cmc06g0161011 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-29
Identity = 60/140 (42.86%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 10  LLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVEEGVE 69
           L++ Y S GY+E+A  +FDEI   +   ++WN++ISGYAE G Y +AL L+   ++  V 
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKD--VVSWNAMISGYAETGNYKEALELFKDMMKTNVR 265

Query: 70  PDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVRAREV 129
           PD  T   V  AC   GSI+ G  VH  +   GF  ++ I+NAL+D+YSKCG +  A  +
Sbjct: 266 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 325

Query: 130 FDQIVYKDIVSWNSMLTGYT 150
           F+++ YKD++SWN+++ GYT
Sbjct: 326 FERLPYKDVISWNTLIGGYT 343

[Close]

BLAST of Cmc06g0161011 vs. TAIR 10
Match: AT1G15510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-28
Identity = 59/144 (40.97%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 6   LTSKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTV- 65
           L +  L ++  FG + DA  VF ++   N    +WN L+ GYA+ G + +A+ LY + + 
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNL--FSWNVLVGGYAKQGYFDEAMCLYHRMLW 190

Query: 66  EEGVEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIV 125
             GV+PD +TFP V + CGGI  +  G+ VH HVVR G+   + ++NAL+ MY KCG + 
Sbjct: 191 VGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVK 250

Query: 126 RAREVFDQIVYKDIVSWNSMLTGY 149
            AR +FD++  +DI+SWN+M++GY
Sbjct: 251 SARLLFDRMPRRDIISWNAMISGY 272

[Close]

BLAST of Cmc06g0161011 vs. TAIR 10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 122.1 bits (305), Expect = 3.9e-28
Identity = 57/140 (40.71%), Postives = 88/140 (62.86%), Query Frame = 0


Query: 10  LLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVEEGVE 69
           L RLY S   +E A  VFDEI +   + +AW+ +I  YA       AL LY++ +  GV 
Sbjct: 41  LTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVR 100

Query: 70  PDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVRAREV 129
           P  +T+P V KAC G+ +I  G+ +H HV  S FA  +++  ALVD Y+KCG +  A +V
Sbjct: 101 PTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKV 160

Query: 130 FDQIVYKDIVSWNSMLTGYT 150
           FD++  +D+V+WN+M++G++
Sbjct: 161 FDEMPKRDMVAWNAMISGFS 180

[Close]

BLAST of Cmc06g0161011 vs. TAIR 10
Match: AT3G24000.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-27
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 8   SKLLRLYTSFGYMEDAHPVFDEIGNHNFSALAWNSLISGYAELGLYVDALALYFQTVEEG 67
           S LL LYT +G M+DA  VFD + + N   ++WN+LI+G+A       AL L+   + +G
Sbjct: 200 SALLDLYTRYGLMDDAQLVFDALESRN--DVSWNALIAGHARRSGTEKALELFQGMLRDG 259

Query: 68  VEPDHFTFPRVHKACGGIGSIQTGEAVHRHVVRSGFAGHVFILNALVDMYSKCGSIVRAR 127
             P HF++  +  AC   G ++ G+ VH ++++SG     F  N L+DMY+K GSI  AR
Sbjct: 260 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 319

Query: 128 EVFDQIVYKDIVSWNSMLTGY 149
           ++FD++  +D+VSWNS+LT Y
Sbjct: 320 KIFDRLAKRDVVSWNSLLTAY 338

The following BLAST results are available for this feature:

BLAST of Cmc06g0161011 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058819.1	1.6e-84	100.00	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
TYK11238.1	2.6e-82	98.70	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_031738497.1	4.5e-66	87.50	pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis sa...	[more]
KAA0067680.1	5.8e-66	87.50	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK23684...	[more]
XP_016898932.1	5.8e-66	87.50	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]

BLAST of Cmc06g0161011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SB36	6.5e-52	67.13	Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop...	[more]
Q9LN01	2.9e-28	42.86	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9M9E2	1.5e-27	40.97	Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop...	[more]
Q9LUS3	5.5e-27	40.71	Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX...	[more]
Q9LIQ7	3.6e-26	41.13	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]

BLAST of Cmc06g0161011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZ73	7.9e-85	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3CJ56	1.3e-82	98.70	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0L5M0	2.2e-66	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176270 PE=4 SV=1	[more]
A0A5D3DJ70	2.8e-66	87.50	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DSF7	2.8e-66	87.50	pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucumis ...	[more]

BLAST of Cmc06g0161011 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25270.1	4.6e-53	67.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	2.1e-29	42.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G15510.1	1.0e-28	40.97	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G16610.1	3.9e-28	40.71	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G24000.1	2.5e-27	41.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 51..149 e-value: 3.2E-17 score: 64.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 39..71 e-value: 1.6E-6 score: 25.9
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 110..136 e-value: 0.0065 score: 16.6 coord: 39..68 e-value: 4.3E-5 score: 23.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 36..70 score: 10.610596
None	No IPR available	PANTHER	PTHR47925:SF105	SUBFAMILY NOT NAMED	coord: 6..149
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 6..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0161011.1	Cmc06g0161011.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0016020	membrane
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding