Cmc06g0160081 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0160081
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 8362074 .. 8362676 (-)
RNA-Seq Expression	Cmc06g0160081
Synteny	Cmc06g0160081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTCGGATTAATGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGATTTCTTAGACACTTTCGTGCTTGTATTCATTGACGATATCTTGGTGTATTCCAAGATAGAGGCAGAGCATGATGAGCATTTACGCATGGTTCTAGAGACCCTTCGAGCCAATAAATTATATGCAAAGTTTTCAAAATGTGAGTTTTGGTTGAAGCAGGTATCTTTTCTAGGTCATGTGGTTTCTAAAGATGGTGTTTCTGTGGATCCAGCTAAGATAGAAGCTGGTTGGCCCCGACCTTCCACAGTTAGTAAAGTTTGTAGTTTCATGGGTTTAGTAGGCTATTACCGAAAGTTTGTGGAGGATTTTTCTCATATAGCTACTCCCCTCACTCAGTTGACCAGGAAAGAAACTCCATTTGTTTGGAGCAAGGTCTGTAAGGATAGTTTTCAGAATCTTAAACAGAGGCTTGTTACTACACTGGTTCTTACTGTACCGGATGGTTTAGGGAGTTTTGTGATTTACAGCGATGCTTCTAAGAAAGGTTTGGGTTATGTTTCGATGCAGCAAGGTAAGGTTGTCGCTTATGCTTCCCATTAG

mRNA sequence

ATGTCCTTCGGATTAATGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGATTTCTTAGACACTTTCGTGCTTGTATTCATTGACGATATCTTGGTGTATTCCAAGATAGAGGCAGAGCATGATGAGCATTTACGCATGGTTCTAGAGACCCTTCGAGCCAATAAATTATATGCAAAGTTTTCAAAATGTGAGTTTTGGTTGAAGCAGGTATCTTTTCTAGGTCATGTGGTTTCTAAAGATGGTGTTTCTGTGGATCCAGCTAAGATAGAAGCTGGTTGGCCCCGACCTTCCACAGTTAGTAAAGTTTGTAGTTTCATGGGTTTAGTAGGCTATTACCGAAAGTTTGTGGAGGATTTTTCTCATATAGCTACTCCCCTCACTCAGTTGACCAGGAAAGAAACTCCATTTGTTTGGAGCAAGGTCTGTAAGGATAGTTTTCAGAATCTTAAACAGAGGCTTGTTACTACACTGGTTCTTACTGTACCGGATGGTTTAGGGAGTTTTGTGATTTACAGCGATGCTTCTAAGAAAGGTTTGGGTTATGTTTCGATGCAGCAAGGTAAGGTTGTCGCTTATGCTTCCCATTAG

Coding sequence (CDS)

ATGTCCTTCGGATTAATGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGATTTCTTAGACACTTTCGTGCTTGTATTCATTGACGATATCTTGGTGTATTCCAAGATAGAGGCAGAGCATGATGAGCATTTACGCATGGTTCTAGAGACCCTTCGAGCCAATAAATTATATGCAAAGTTTTCAAAATGTGAGTTTTGGTTGAAGCAGGTATCTTTTCTAGGTCATGTGGTTTCTAAAGATGGTGTTTCTGTGGATCCAGCTAAGATAGAAGCTGGTTGGCCCCGACCTTCCACAGTTAGTAAAGTTTGTAGTTTCATGGGTTTAGTAGGCTATTACCGAAAGTTTGTGGAGGATTTTTCTCATATAGCTACTCCCCTCACTCAGTTGACCAGGAAAGAAACTCCATTTGTTTGGAGCAAGGTCTGTAAGGATAGTTTTCAGAATCTTAAACAGAGGCTTGTTACTACACTGGTTCTTACTGTACCGGATGGTTTAGGGAGTTTTGTGATTTACAGCGATGCTTCTAAGAAAGGTTTGGGTTATGTTTCGATGCAGCAAGGTAAGGTTGTCGCTTATGCTTCCCATTAG

Protein sequence

MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAGWPRPSTVSKVCSFMGLVGYYRKFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSDASKKGLGYVSMQQGKVVAYASH

Homology

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BLAST of Cmc06g0160081 vs. NCBI nr
Match: KAA0050466.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 374.0 bits (959), Expect = 8.0e-100
Identity = 187/193 (96.89%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           MSFGL NAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK
Sbjct: 472 MSFGLTNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 531

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAGWPRPSTVSKVCSFMGLVGYYRKF 120
           LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAGWPRPSTVSKV SFMGLVGYYRKF
Sbjct: 532 LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAGWPRPSTVSKVRSFMGLVGYYRKF 591

Query: 121 VEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSDAS 180
           VEDFSHIATPLTQLTRK TPFVWSKVCKDSFQNLKQRLVT  VLTVPDGLGSFVIYSDAS
Sbjct: 592 VEDFSHIATPLTQLTRKGTPFVWSKVCKDSFQNLKQRLVTAPVLTVPDGLGSFVIYSDAS 651

Query: 181 KKGLGYVSMQQGK 194
           KKGLGYV MQQGK
Sbjct: 652 KKGLGYVLMQQGK 664

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BLAST of Cmc06g0160081 vs. NCBI nr
Match: KAA0040188.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 2.6e-90
Identity = 171/201 (85.07%), Postives = 185/201 (92.04%), Query Frame = 0


Query: 1    MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
            MSFGL NAPAVFMDLMNRVFK+FLDTFV+VFIDDIL+YSK+EAEH+EHLR+VL+TLR NK
Sbjct: 819  MSFGLTNAPAVFMDLMNRVFKEFLDTFVIVFIDDILIYSKMEAEHEEHLRIVLQTLRDNK 878

Query: 61   LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
            LYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA  GW RPSTVS+V SF+GL GYYR
Sbjct: 879  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 938

Query: 121  KFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSD 180
            +FVE+FS IATPLTQLTRK  PFVWSK C+DSFQNLKQ+LVT  VLTVPDG GSFVIYSD
Sbjct: 939  RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 998

Query: 181  ASKKGLGYVSMQQGKVVAYAS 200
            ASKKGLG+V MQQGKVVAYAS
Sbjct: 999  ASKKGLGFVLMQQGKVVAYAS 1019

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BLAST of Cmc06g0160081 vs. NCBI nr
Match: KAA0060847.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 7.5e-90
Identity = 171/201 (85.07%), Postives = 183/201 (91.04%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           MSFGL NAPAVFMDLMNRVF++FLDTFV+VFIDDIL+YSK EAEH+EHLRMVL+TLR NK
Sbjct: 115 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 174

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA  GW RPSTVS+V SF+GL GYYR
Sbjct: 175 LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 234

Query: 121 KFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSD 180
           +FVE+FS IATPLTQLTRK  PFVWSK C+DSFQ LKQ+LVT  VLTVPDG GSFVIYSD
Sbjct: 235 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSD 294

Query: 181 ASKKGLGYVSMQQGKVVAYAS 200
           ASKKGLG V MQQGKVVAYAS
Sbjct: 295 ASKKGLGCVLMQQGKVVAYAS 315

[Close]

BLAST of Cmc06g0160081 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.3e-89
Identity = 171/201 (85.07%), Postives = 183/201 (91.04%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           MSFGL NAPAVFMDLMNRVF++FLDTFV+VFIDDIL+YSK EAEH+EHLRMVL+TLR NK
Sbjct: 694 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 753

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA  GW RPSTVS+V SF+GL GYYR
Sbjct: 754 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 813

Query: 121 KFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSD 180
           +FVE+FS IATPLTQLTRK  PFVWSK C+DSFQNLKQ+LVT  VLTVPDG GSFVIYSD
Sbjct: 814 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 873

Query: 181 ASKKGLGYVSMQQGKVVAYAS 200
           ASKKGLG V MQQGKVVAYAS
Sbjct: 874 ASKKGLGCVLMQQGKVVAYAS 894

[Close]

BLAST of Cmc06g0160081 vs. NCBI nr
Match: KAA0054785.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.3e-89
Identity = 170/201 (84.58%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           MSFGL NAPAVFMDLMNRVF++FLDTFV+VFIDDI +YSK E EH+EHLRMVL+TLR NK
Sbjct: 188 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDIFIYSKTEVEHEEHLRMVLQTLRDNK 247

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSK GVSV PAKIEA  GW RPSTVS+VCSF+GL GYYR
Sbjct: 248 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVYPAKIEAVTGWTRPSTVSEVCSFLGLAGYYR 307

Query: 121 KFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSD 180
           +FVE+FS IATPLTQLTRK  PFVWSK C+DSFQNLKQ+LVTT VLTVPDG GSFVIYSD
Sbjct: 308 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTTPVLTVPDGSGSFVIYSD 367

Query: 181 ASKKGLGYVSMQQGKVVAYAS 200
           ASKKGLG V MQQGKVVAYAS
Sbjct: 368 ASKKGLGCVLMQQGKVVAYAS 388

[Close]

BLAST of Cmc06g0160081 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.8e-33
Identity = 73/202 (36.14%), Postives = 118/202 (58.42%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           M FGL NAPA F   MN + +  L+   LV++DDI+++S    EH   +++V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           L  +  KCEF  K+ +FLGH+V+ DG+  +P K++A   +P P+   ++ +F+GL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 KFVEDFSHIATPLTQLTRKETPFVWSKV-CKDSFQNLKQRLVTTLVLTVPDGLGSFVIYS 180
           KF+ +++ IA P+T   +K T     K+   ++F+ LK  ++   +L +PD    FV+ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASKKGLGYVSMQQGKVVAYAS 200
           DAS   LG V  Q G  +++ S
Sbjct: 513 DASNLALGAVLSQNGHPISFIS 534

[Close]

BLAST of Cmc06g0160081 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-32
Identity = 79/202 (39.11%), Postives = 116/202 (57.43%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           M FGL NAPA F   MN + +  L+   LV++DDI+V+S    EH + L +V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           L  +  KCEF  ++ +FLGHV++ DG+  +P KIEA   +P P+   ++ +F+GL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 KFVEDFSHIATPLTQLTRKETPFVWSKVCKDS-FQNLKQRLVTTLVLTVPDGLGSFVIYS 180
           KF+ +F+ IA P+T+  +K      +    DS F+ LK  +    +L VPD    F + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASKKGLGYVSMQQGKVVAYAS 200
           DAS   LG V  Q G  ++Y S
Sbjct: 514 DASDVALGAVLSQDGHPLSYIS 535

[Close]

BLAST of Cmc06g0160081 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-28
Identity = 69/213 (32.39%), Postives = 120/213 (56.34%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           + FGL NA ++F   ++ V ++ +     V++DD++++S+ E++H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           +     K  F+ + V +LG +VSKDG   DP K++A   +P P  V KV SF+GL  YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 KFVEDFSHIATPLTQLTR-----------KETPFVWSKVCKDSFQNLKQRLVT-TLVLTV 180
            F++DF+ IA P+T + +           K+ P  +++  +++FQ L+  L +  ++L  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PDGLGSFVIYSDASKKGLGYVSMQQGKVVAYAS 200
           PD    F + +DAS  G+G V  Q+G+ +   S
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMIS 521

[Close]

BLAST of Cmc06g0160081 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.8e-28
Identity = 72/216 (33.33%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           + FGL NAPA+F  +++ + ++ +     V+IDDI+V+S+    H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           L     K  F   QV FLG++V+ DG+  DP K+ A    P P++V ++  F+G+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 KFVEDFSHIATPLTQLTR-----------KETPFVWSKVCKDSFQNLKQRLVTTLVLTVP 180
           KF++D++ +A PLT LTR            + P    +    SF +LK  L ++ +L  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 DGLGSFVIYSDASKKGLGYVSMQ----QGKVVAYAS 200
                F + +DAS   +G V  Q    + + +AY S
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYIS 465

[Close]

BLAST of Cmc06g0160081 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.7e-24
Identity = 62/193 (32.12%), Postives = 106/193 (54.92%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           M +G+  APA F   +N +  +  ++ V+ ++DDIL++SK E+EH +H++ VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIE--AGWPRPSTVSKVCSFMGLVGYYR 120
           L    +KCEF   QV F+G+ +S+ G +     I+    W +P    ++  F+G V Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 KFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSD 180
           KF+   S +  PL  L +K+  + W+     + +N+KQ LV+  VL   D     ++ +D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASKKGLGYVSMQQ 192
           AS   +G V  Q+
Sbjct: 714 ASDVAVGAVLSQK 726

[Close]

BLAST of Cmc06g0160081 vs. ExPASy TrEMBL
Match: A0A5A7U8F7 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00790 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.9e-100
Identity = 187/193 (96.89%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           MSFGL NAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK
Sbjct: 472 MSFGLTNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 531

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAGWPRPSTVSKVCSFMGLVGYYRKF 120
           LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAGWPRPSTVSKV SFMGLVGYYRKF
Sbjct: 532 LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAGWPRPSTVSKVRSFMGLVGYYRKF 591

Query: 121 VEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSDAS 180
           VEDFSHIATPLTQLTRK TPFVWSKVCKDSFQNLKQRLVT  VLTVPDGLGSFVIYSDAS
Sbjct: 592 VEDFSHIATPLTQLTRKGTPFVWSKVCKDSFQNLKQRLVTAPVLTVPDGLGSFVIYSDAS 651

Query: 181 KKGLGYVSMQQGK 194
           KKGLGYV MQQGK
Sbjct: 652 KKGLGYVLMQQGK 664

[Close]

BLAST of Cmc06g0160081 vs. ExPASy TrEMBL
Match: A0A5A7TB42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00260 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 171/201 (85.07%), Postives = 185/201 (92.04%), Query Frame = 0


Query: 1    MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
            MSFGL NAPAVFMDLMNRVFK+FLDTFV+VFIDDIL+YSK+EAEH+EHLR+VL+TLR NK
Sbjct: 819  MSFGLTNAPAVFMDLMNRVFKEFLDTFVIVFIDDILIYSKMEAEHEEHLRIVLQTLRDNK 878

Query: 61   LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
            LYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA  GW RPSTVS+V SF+GL GYYR
Sbjct: 879  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 938

Query: 121  KFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSD 180
            +FVE+FS IATPLTQLTRK  PFVWSK C+DSFQNLKQ+LVT  VLTVPDG GSFVIYSD
Sbjct: 939  RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 998

Query: 181  ASKKGLGYVSMQQGKVVAYAS 200
            ASKKGLG+V MQQGKVVAYAS
Sbjct: 999  ASKKGLGFVLMQQGKVVAYAS 1019

[Close]

BLAST of Cmc06g0160081 vs. ExPASy TrEMBL
Match: A0A5A7V1X7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00800 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.6e-90
Identity = 171/201 (85.07%), Postives = 183/201 (91.04%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           MSFGL NAPAVFMDLMNRVF++FLDTFV+VFIDDIL+YSK EAEH+EHLRMVL+TLR NK
Sbjct: 115 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 174

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA  GW RPSTVS+V SF+GL GYYR
Sbjct: 175 LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 234

Query: 121 KFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSD 180
           +FVE+FS IATPLTQLTRK  PFVWSK C+DSFQ LKQ+LVT  VLTVPDG GSFVIYSD
Sbjct: 235 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSD 294

Query: 181 ASKKGLGYVSMQQGKVVAYAS 200
           ASKKGLG V MQQGKVVAYAS
Sbjct: 295 ASKKGLGCVLMQQGKVVAYAS 315

[Close]

BLAST of Cmc06g0160081 vs. ExPASy TrEMBL
Match: A0A5A7UM74 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00700 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.2e-90
Identity = 170/201 (84.58%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           MSFGL NAPAVFMDLMNRVF++FLDTFV+VFIDDI +YSK E EH+EHLRMVL+TLR NK
Sbjct: 188 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDIFIYSKTEVEHEEHLRMVLQTLRDNK 247

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSK GVSV PAKIEA  GW RPSTVS+VCSF+GL GYYR
Sbjct: 248 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVYPAKIEAVTGWTRPSTVSEVCSFLGLAGYYR 307

Query: 121 KFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSD 180
           +FVE+FS IATPLTQLTRK  PFVWSK C+DSFQNLKQ+LVTT VLTVPDG GSFVIYSD
Sbjct: 308 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTTPVLTVPDGSGSFVIYSD 367

Query: 181 ASKKGLGYVSMQQGKVVAYAS 200
           ASKKGLG V MQQGKVVAYAS
Sbjct: 368 ASKKGLGCVLMQQGKVVAYAS 388

[Close]

BLAST of Cmc06g0160081 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.2e-90
Identity = 171/201 (85.07%), Postives = 183/201 (91.04%), Query Frame = 0


Query: 1   MSFGLMNAPAVFMDLMNRVFKDFLDTFVLVFIDDILVYSKIEAEHDEHLRMVLETLRANK 60
           MSFGL NAPAVFMDLMNRVF++FLDTFV+VFIDDIL+YSK EAEH+EHLRMVL+TLR NK
Sbjct: 694 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 753

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEA--GWPRPSTVSKVCSFMGLVGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEA  GW RPSTVS+V SF+GL GYYR
Sbjct: 754 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 813

Query: 121 KFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLVLTVPDGLGSFVIYSD 180
           +FVE+FS IATPLTQLTRK  PFVWSK C+DSFQNLKQ+LVT  VLTVPDG GSFVIYSD
Sbjct: 814 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 873

Query: 181 ASKKGLGYVSMQQGKVVAYAS 200
           ASKKGLG V MQQGKVVAYAS
Sbjct: 874 ASKKGLGCVLMQQGKVVAYAS 894

[Close]

BLAST of Cmc06g0160081 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-23
Identity = 52/125 (41.60%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 48  HLRMVLETLRANKLYAKFSKCEFWLKQVSFLG--HVVSKDGVSVDPAKIEA--GWPRPST 107
           HL MVL+    ++ YA   KC F   Q+++LG  H++S +GVS DPAK+EA  GWP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSKVCSFMGLVGYYRKFVEDFSHIATPLTQLTRKETPFVWSKVCKDSFQNLKQRLVTTLV 167
            +++  F+GL GYYR+FV+++  I  PLT+L +K +   W+++   +F+ LK  + T  V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LTVPD 169
           L +PD
Sbjct: 123 LALPD 126

The following BLAST results are available for this feature:

BLAST of Cmc06g0160081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050466.1	8.0e-100	96.89	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0040188.1	2.6e-90	85.07	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060847.1	7.5e-90	85.07	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	1.3e-89	85.07	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054785.1	1.3e-89	84.58	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0160081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	8.8e-33	36.14	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.5e-32	39.11	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10401	2.2e-28	32.39	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	3.8e-28	33.33	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P0CT41	5.7e-24	32.12	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc06g0160081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8F7	3.9e-100	96.89	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7TB42	1.2e-90	85.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7V1X7	3.6e-90	85.07	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00800 PE...	[more]
A0A5A7UM74	6.2e-90	84.58	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00700 PE...	[more]
A0A5A7U330	6.2e-90	85.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]

BLAST of Cmc06g0160081 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.7e-23	41.60	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 93..181 e-value: 4.4E-25 score: 89.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 3.1E-33 score: 116.5
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 143..200 e-value: 2.9E-11 score: 43.3
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 3.5E-15 score: 56.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 8.773122
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 17..168
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 17..168
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.39552E-36 score: 123.86
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0160081.1	Cmc06g0160081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding