Cmc06g0158641 (gene) Melon (Charmono) v1.1

Overview
NameCmc06g0158641
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPhotosystem II protein D1
LocationCMiso1.1chr06: 7065735 .. 7066088 (-)
RNA-Seq ExpressionCmc06g0158641
SyntenyCmc06g0158641
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAGCACAACACCCTTATGCACCCATTCCATAGGTGTAGTTGGTGTATTCAAGGGCTCCCTGTTCAGTCCTATGCATGGTTCCTTGATCACTTTTAGTTTGATCAGGGAAAGCACAGAAAATGAATCTGCTAATTCAGGTTACAGATTCAGTCAAGAGGAAGAAACTGAGAATATCATAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCACTATGCTAGTTTCGACAACTCTCGTTCTTTACATTTCTTCCTAGCTATTTGGCCTGTAGTAGGTATCTGGTTTACCGTAAAGGTATTAGTAGTATGGTTTTCAACTGAAATGGTTTCAATTTCAACCAATCTGTAG

mRNA sequence

ATGCTGAGCACAACACCCTTATGCACCCATTCCATAGGTGTAGTTGGTGTATTCAAGGGCTCCCTGTTCAGTCCTATGCATGGTTCCTTGATCACTTTTAGTTTGATCAGGGAAAGCACAGAAAATGAATCTGCTAATTCAGGTTACAGATTCAGTCAAGAGGAAGAAACTGAGAATATCATAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCACTATGCTAGTTTCGACAACTCTCGTTCTTTACATTTCTTCCTAGCTATTTGGCCTGTAGTAGGTATCTGGTTTACCGTAAAGGTATTAGTAGTATGGTTTTCAACTGAAATGGTTTCAATTTCAACCAATCTGTAG

Coding sequence (CDS)

ATGCTGAGCACAACACCCTTATGCACCCATTCCATAGGTGTAGTTGGTGTATTCAAGGGCTCCCTGTTCAGTCCTATGCATGGTTCCTTGATCACTTTTAGTTTGATCAGGGAAAGCACAGAAAATGAATCTGCTAATTCAGGTTACAGATTCAGTCAAGAGGAAGAAACTGAGAATATCATAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCACTATGCTAGTTTCGACAACTCTCGTTCTTTACATTTCTTCCTAGCTATTTGGCCTGTAGTAGGTATCTGGTTTACCGTAAAGGTATTAGTAGTATGGTTTTCAACTGAAATGGTTTCAATTTCAACCAATCTGTAG

Protein sequence

MLSTTPLCTHSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGRLIFHYASFDNSRSLHFFLAIWPVVGIWFTVKVLVVWFSTEMVSISTNL
Homology
BLAST of Cmc06g0158641 vs. NCBI nr
Match: AYN76324.1 (photosystem II protein D1, partial [uncultured eukaryote])

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 100 HMLGVAGVFGGSLFSAMHGSLVTLSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 159

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLAIWPVVGIWFT
Sbjct: 160 LIFQYASFNNSRSLHFFLAIWPVVGIWFT 188

BLAST of Cmc06g0158641 vs. NCBI nr
Match: YP_009646179.1 (D1 reaction center protein of photosystem II [Chloropicon laureae] >QBX97699.1 D1 reaction center protein of photosystem II [Chloropicon laureae])

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-34
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLAIWPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAIWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. NCBI nr
Match: YP_009629536.1 (D1 reaction center protein of photosystem II [Chlorococcum tatrense] >AYQ94320.1 D1 reaction center protein of photosystem II [Chlorococcum tatrense])

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-34
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLAIWPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAIWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. NCBI nr
Match: ALO63125.1 (D1 reaction center protein of photosystem II [Chloromonas perforata])

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-34
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLAIWPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAIWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. NCBI nr
Match: AYQ95076.1 (D1 reaction center protein of photosystem II [Protosiphon botryoides])

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-34
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLAIWPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAIWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. ExPASy Swiss-Prot
Match: Q9MUW0 (Photosystem II protein D1 OS=Mesostigma viride OX=41882 GN=psbA PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-36
Identity = 73/89 (82.02%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GY+F QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLA+WPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAVWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. ExPASy Swiss-Prot
Match: Q70Y17 (Photosystem II protein D1 OS=Amborella trichopoda OX=13333 GN=psbA PE=3 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-36
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLA WPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAAWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. ExPASy Swiss-Prot
Match: Q7YJY8 (Photosystem II protein D1 OS=Calycanthus floridus var. glaucus OX=212734 GN=psbA PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-36
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLA WPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAAWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. ExPASy Swiss-Prot
Match: A6MMA2 (Photosystem II protein D1 OS=Chloranthus spicatus OX=13006 GN=psbA PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-36
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLA WPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAAWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. ExPASy Swiss-Prot
Match: Q09MJ8 (Photosystem II protein D1 OS=Citrus sinensis OX=2711 GN=psbA PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-36
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLA WPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAAWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. ExPASy TrEMBL
Match: A0A3G2LSG7 (Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.7e-35
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 100 HMLGVAGVFGGSLFSAMHGSLVTLSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 159

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLAIWPVVGIWFT
Sbjct: 160 LIFQYASFNNSRSLHFFLAIWPVVGIWFT 188

BLAST of Cmc06g0158641 vs. ExPASy TrEMBL
Match: A0A0S2LNQ7 (Photosystem II protein D1 OS=Chloromonas perforata OX=51730 GN=psbA PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-34
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLAIWPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAIWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. ExPASy TrEMBL
Match: A0A4D6C3T7 (Photosystem II protein D1 OS=Chloropicon laureae OX=464258 GN=psbA PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-34
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLAIWPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAIWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. ExPASy TrEMBL
Match: F1KBW8 (Photosystem II protein D1 OS=Alangium platanifolium OX=60116 GN=psbA PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.2e-34
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GVVGVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVVGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLA WPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAAWPVVGIWFT 286

BLAST of Cmc06g0158641 vs. ExPASy TrEMBL
Match: A0A3G2LRL4 (Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.8e-34
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN+GYRF QEEET NI+AAHGYFGR
Sbjct: 100 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGR 159

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLA+WPVVGIWFT
Sbjct: 160 LIFQYASFNNSRSLHFFLALWPVVGIWFT 188

BLAST of Cmc06g0158641 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-37
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 0

Query: 10  HSIGVVGVFKGSLFSPMHGSLITFSLIRESTENESANSGYRFSQEEETENIIAAHGYFGR 69
           H +GV GVF GSLFS MHGSL+T SLIRE+TENESAN GYRF QEEET NI+AAHGYFGR
Sbjct: 198 HMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGR 257

Query: 70  LIFHYASFDNSRSLHFFLAIWPVVGIWFT 99
           LIF YASF+NSRSLHFFLA WPVVGIWFT
Sbjct: 258 LIFQYASFNNSRSLHFFLAAWPVVGIWFT 286

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AYN76324.12.0e-3484.27photosystem II protein D1, partial [uncultured eukaryote][more]
YP_009646179.13.4e-3484.27D1 reaction center protein of photosystem II [Chloropicon laureae] >QBX97699.1 D... [more]
YP_009629536.13.4e-3484.27D1 reaction center protein of photosystem II [Chlorococcum tatrense] >AYQ94320.1... [more]
ALO63125.13.4e-3484.27D1 reaction center protein of photosystem II [Chloromonas perforata][more]
AYQ95076.13.4e-3484.27D1 reaction center protein of photosystem II [Protosiphon botryoides][more]
Match NameE-valueIdentityDescription
Q9MUW01.3e-3682.02Photosystem II protein D1 OS=Mesostigma viride OX=41882 GN=psbA PE=3 SV=1[more]
Q70Y171.7e-3683.15Photosystem II protein D1 OS=Amborella trichopoda OX=13333 GN=psbA PE=3 SV=2[more]
Q7YJY81.7e-3683.15Photosystem II protein D1 OS=Calycanthus floridus var. glaucus OX=212734 GN=psbA... [more]
A6MMA21.7e-3683.15Photosystem II protein D1 OS=Chloranthus spicatus OX=13006 GN=psbA PE=3 SV=1[more]
Q09MJ81.7e-3683.15Photosystem II protein D1 OS=Citrus sinensis OX=2711 GN=psbA PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A3G2LSG79.7e-3584.27Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA P... [more]
A0A0S2LNQ71.7e-3484.27Photosystem II protein D1 OS=Chloromonas perforata OX=51730 GN=psbA PE=3 SV=1[more]
A0A4D6C3T71.7e-3484.27Photosystem II protein D1 OS=Chloropicon laureae OX=464258 GN=psbA PE=3 SV=1[more]
F1KBW82.2e-3484.27Photosystem II protein D1 OS=Alangium platanifolium OX=60116 GN=psbA PE=3 SV=1[more]
A0A3G2LRL42.8e-3483.15Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA P... [more]
Match NameE-valueIdentityDescription
ATCG00020.11.6e-3783.15photosystem II reaction center protein A [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036854Photosystem II protein D1/D2 superfamilyGENE3D1.20.85.10coord: 4..113
e-value: 3.0E-7
score: 32.3
IPR036854Photosystem II protein D1/D2 superfamilySUPERFAMILY81483Bacterial photosystem II reaction centre, L and M subunitscoord: 10..98
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 9..99
e-value: 3.2E-17
score: 62.6
IPR000484Photosynthetic reaction centre, L/MPANTHERPTHR33149PHOTOSYSTEM II PROTEIN D1coord: 10..98
NoneNo IPR availablePANTHERPTHR33149:SF30PHOTOSYNTHETIC REACTION CENTRE, L/M-RELATEDcoord: 10..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc06g0158641.1Cmc06g0158641.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0009635 response to herbicide
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function GO:0010242 oxygen evolving activity