Cmc06g0158621 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0158621
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	50S ribosomal protein L2, chloroplastic
Location	CMiso1.1chr06: 7064818 .. 7065228 (+)
RNA-Seq Expression	Cmc06g0158621
Synteny	Cmc06g0158621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTATAGTAAAATGGATTACAAAAGAGGAGAAATCGGCCACATTCAAATTACCTTTTGGGGAGGTTCGTTTGATATCCAAAAATTGCTCAGTAACAGTCGGACAAGTGGAGAATGCAGGGGTTAACCAGAAAAGTTTGGGTAGAGCCGGATCTCAATGTTGGCTAGGTAAGCATCTTGTAGTCAAAGAAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGAAGGGTCCCAATTGGTCGAAAAAAACCCGCAACCCTTTGGGGTTATCCTGCACTTGGAATGGAAGAAGAAGTAGAAAAAGGAATCAATATAGTGAGAATTTGA

mRNA sequence

ATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTATAGTAAAATGGATTACAAAAGAGGAGAAATCGGCCACATTCAAATTACCTTTTGGGGAGGTTCGTTTGATATCCAAAAATTGCTCAGTAACAGTCGGACAAGTGGAGAATGCAGGGGTTAACCAGAAAAGTTTGGGTAGAGCCGGATCTCAATGTTGGCTAGGTAAGCATCTTGTAGTCAAAGAAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGAAGGGTCCCAATTGGTCGAAAAAAACCCGCAACCCTTTGGGGTTATCCTGCACTTGGAATGGAAGAAGAAGTAGAAAAAGGAATCAATATAGTGAGAATTTGA

Coding sequence (CDS)

ATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTATAGTAAAATGGATTACAAAAGAGGAGAAATCGGCCACATTCAAATTACCTTTTGGGGAGGTTCGTTTGATATCCAAAAATTGCTCAGTAACAGTCGGACAAGTGGAGAATGCAGGGGTTAACCAGAAAAGTTTGGGTAGAGCCGGATCTCAATGTTGGCTAGGTAAGCATCTTGTAGTCAAAGAAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGAAGGGTCCCAATTGGTCGAAAAAAACCCGCAACCCTTTGGGGTTATCCTGCACTTGGAATGGAAGAAGAAGTAGAAAAAGGAATCAATATAGTGAGAATTTGA

Protein sequence

MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQVENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPALGMEEEVEKGINIVRI

Homology

[Close]

BLAST of Cmc06g0158621 vs. NCBI nr
Match: KAA0033644.1 (ribosomal protein L2 [Cucumis melo var. makuwa] >TYK22943.1 ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 2.4e-71
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ
Sbjct: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           VENAGVNQKSLGRAGSQCWLGKHLVVK VVMNPVDHPHGGGEGR PIGRKKPATLWGYPA
Sbjct: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKGVVMNPVDHPHGGGEGRAPIGRKKPATLWGYPA 120

Query: 121 LGMEEEVEKGINIVRI 137
           LGMEEEVEKGINIVRI
Sbjct: 121 LGMEEEVEKGINIVRI 136

[Close]

BLAST of Cmc06g0158621 vs. NCBI nr
Match: KAA0064006.1 (ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 4.5e-62
Identity = 121/136 (88.97%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLGKGGQLARAAGA+ K I KE KSATFKLP GEVRLISKNCS TVGQ
Sbjct: 129 MPLGTAIHNIEITLGKGGQLARAAGAVAKRIAKEGKSATFKLPSGEVRLISKNCSATVGQ 188

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGSQCWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 189 VGNAGVNQKSLGRAGSQCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 248

Query: 121 LGMEEEVEKGINIVRI 137
           LGMEEEVEKGINIVRI
Sbjct: 249 LGMEEEVEKGINIVRI 264

[Close]

BLAST of Cmc06g0158621 vs. NCBI nr
Match: AXU40408.1 (ribosomal protein L2 [Gomphogyne cissiformis var. villosa])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGTTIHNIEITLGKGGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 134 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LG 123
           LG
Sbjct: 254 LG 255

[Close]

BLAST of Cmc06g0158621 vs. NCBI nr
Match: AXU40407.1 (ribosomal protein L2 [Gomphogyne cissiformis var. villosa])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGTTIHNIEITLGKGGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LG 123
           LG
Sbjct: 253 LG 254

[Close]

BLAST of Cmc06g0158621 vs. NCBI nr
Match: AFU96017.1 (Rpl2, partial [Balanops pachyphylla])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLGKGGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 139 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 198

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGRVPIGRKKPAT WGYPA
Sbjct: 199 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYPA 258

Query: 121 LG 123
           LG
Sbjct: 259 LG 260

[Close]

BLAST of Cmc06g0158621 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.5e-56
Identity = 105/122 (86.07%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLGKGGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LG 123
           LG
Sbjct: 253 LG 254

[Close]

BLAST of Cmc06g0158621 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 104/122 (85.25%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLG+GGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 134 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LG 123
           LG
Sbjct: 254 LG 255

[Close]

BLAST of Cmc06g0158621 vs. ExPASy Swiss-Prot
Match: Q14FB6 (50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 104/122 (85.25%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLG+GGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LG 123
           LG
Sbjct: 253 LG 254

[Close]

BLAST of Cmc06g0158621 vs. ExPASy Swiss-Prot
Match: A4QJF6 (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 105/129 (81.40%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLGKGGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATIKLPSGEVRLISKNCSATVGQ 192

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V N GVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGMEEEVEK 130
           LG      K
Sbjct: 253 LGRRTRKRK 261

[Close]

BLAST of Cmc06g0158621 vs. ExPASy Swiss-Prot
Match: A4QJP0 (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 105/129 (81.40%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLGKGGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATIKLPSGEVRLISKNCSATVGQ 192

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V N GVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGMEEEVEK 130
           LG      K
Sbjct: 253 LGRRTRKRK 261

[Close]

BLAST of Cmc06g0158621 vs. ExPASy TrEMBL
Match: A0A5D3DHA1 (Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00210 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ
Sbjct: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           VENAGVNQKSLGRAGSQCWLGKHLVVK VVMNPVDHPHGGGEGR PIGRKKPATLWGYPA
Sbjct: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKGVVMNPVDHPHGGGEGRAPIGRKKPATLWGYPA 120

Query: 121 LGMEEEVEKGINIVRI 137
           LGMEEEVEKGINIVRI
Sbjct: 121 LGMEEEVEKGINIVRI 136

[Close]

BLAST of Cmc06g0158621 vs. ExPASy TrEMBL
Match: A0A5A7VC43 (Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44445G00010 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.2e-62
Identity = 121/136 (88.97%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLGKGGQLARAAGA+ K I KE KSATFKLP GEVRLISKNCS TVGQ
Sbjct: 129 MPLGTAIHNIEITLGKGGQLARAAGAVAKRIAKEGKSATFKLPSGEVRLISKNCSATVGQ 188

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGSQCWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 189 VGNAGVNQKSLGRAGSQCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 248

Query: 121 LGMEEEVEKGINIVRI 137
           LGMEEEVEKGINIVRI
Sbjct: 249 LGMEEEVEKGINIVRI 264

[Close]

BLAST of Cmc06g0158621 vs. ExPASy TrEMBL
Match: A0A346TM17 (50S ribosomal protein L2, chloroplastic OS=Gomphogyne cissiformis var. villosa OX=2315457 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.4e-54
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGTTIHNIEITLGKGGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LG 123
           LG
Sbjct: 253 LG 254

[Close]

BLAST of Cmc06g0158621 vs. ExPASy TrEMBL
Match: A0A346TM18 (50S ribosomal protein L2, chloroplastic OS=Gomphogyne cissiformis var. villosa OX=2315457 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.4e-54
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGTTIHNIEITLGKGGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 134 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKPAT WGYPA
Sbjct: 194 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LG 123
           LG
Sbjct: 254 LG 255

[Close]

BLAST of Cmc06g0158621 vs. ExPASy TrEMBL
Match: K4KP98 (Rpl2 (Fragment) OS=Balanops pachyphylla OX=1241920 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.3e-54
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLGKGGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 139 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 198

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V NAGVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGRVPIGRKKPAT WGYPA
Sbjct: 199 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRVPIGRKKPATPWGYPA 258

Query: 121 LG 123
           LG
Sbjct: 259 LG 260

[Close]

BLAST of Cmc06g0158621 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 214.2 bits (544), Expect = 6.7e-56
Identity = 103/129 (79.84%), Postives = 107/129 (82.95%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLG+GGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V N GVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKP T WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGMEEEVEK 130
           LG      K
Sbjct: 253 LGRRTRKRK 261

[Close]

BLAST of Cmc06g0158621 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 214.2 bits (544), Expect = 6.7e-56
Identity = 103/129 (79.84%), Postives = 107/129 (82.95%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEKSATFKLPFGEVRLISKNCSVTVGQ 60
           MPLGT IHNIEITLG+GGQLARAAGA+ K I KE KSAT KLP GEVRLISKNCS TVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATLWGYPA 120
           V N GVNQKSLGRAGS+CWLGK  VV+ VVMNPVDHPHGGGEGR PIGRKKP T WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGMEEEVEK 130
           LG      K
Sbjct: 253 LGRRTRKRK 261

[Close]

BLAST of Cmc06g0158621 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-21
Identity = 52/126 (41.27%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEK-SATFKLPFGEVRLISKNCSVTVG 60
           M +GT IHNIE+  G+G ++ RAAG   K + +  K     KLP G+ + I+  C  T+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATL---W 120
            V N     K L +AG   WLG    V+ V MNP DHPHGGGEG+      +  T    W
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 121 GYPALG 123
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of Cmc06g0158621 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-21
Identity = 52/126 (41.27%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAGAIVKWITKEEK-SATFKLPFGEVRLISKNCSVTVG 60
           M +GT IHNIE+  G+G ++ RAAG   K + +  K     KLP G+ + I+  C  T+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVENAGVNQKSLGRAGSQCWLGKHLVVKEVVMNPVDHPHGGGEGRVPIGRKKPATL---W 120
            V N     K L +AG   WLG    V+ V MNP DHPHGGGEG+      +  T    W
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 121 GYPALG 123
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of Cmc06g0158621 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 74.7 bits (182), Expect = 6.4e-14
Identity = 44/112 (39.29%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 1   MPLGTTIHNIEITLGKGGQLARAAG--AIVKWITKEEKSATFKLPFGEVRLISKNCSVTV 60
           +P G  I N+E+ +G  G LARA+G  AIV     E  +   KLP G  +++   C   +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 61  GQVENAGVNQKSLGRAGS---------QCWLGKHLVVKEVVMNPVDHPHGGG 102
           GQV   G  +K L +AG+          CW     VV+ V MNPV+HPHGGG
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGG 215

The following BLAST results are available for this feature:

BLAST of Cmc06g0158621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033644.1	2.4e-71	98.53	ribosomal protein L2 [Cucumis melo var. makuwa] >TYK22943.1 ribosomal protein L2...	[more]
KAA0064006.1	4.5e-62	88.97	ribosomal protein L2 [Cucumis melo var. makuwa]	[more]
AXU40408.1	1.3e-53	86.89	ribosomal protein L2 [Gomphogyne cissiformis var. villosa]	[more]
AXU40407.1	1.3e-53	86.89	ribosomal protein L2 [Gomphogyne cissiformis var. villosa]	[more]
AFU96017.1	1.7e-53	86.89	Rpl2, partial [Balanops pachyphylla]	[more]

BLAST of Cmc06g0158621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK5	6.5e-56	86.07	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
Q14F95	1.5e-55	85.25	50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=...	[more]
Q14FB6	1.5e-55	85.25	50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=...	[more]
A4QJF6	1.5e-55	81.40	50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium OX=434059 GN=r...	[more]
A4QJP0	1.5e-55	81.40	50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=r...	[more]

BLAST of Cmc06g0158621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHA1	1.2e-71	98.53	Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7VC43	2.2e-62	88.97	Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A346TM17	6.4e-54	86.89	50S ribosomal protein L2, chloroplastic OS=Gomphogyne cissiformis var. villosa O...	[more]
A0A346TM18	6.4e-54	86.89	50S ribosomal protein L2, chloroplastic OS=Gomphogyne cissiformis var. villosa O...	[more]
K4KP98	8.3e-54	86.89	Rpl2 (Fragment) OS=Balanops pachyphylla OX=1241920 GN=rpl2 PE=3 SV=1	[more]

BLAST of Cmc06g0158621 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	6.7e-56	79.84	ribosomal protein L2	[more]
ATCG01310.1	6.7e-56	79.84	ribosomal protein L2	[more]
AT2G44065.1	3.1e-21	41.27	Ribosomal protein L2 family	[more]
AT2G44065.2	3.1e-21	41.27	Ribosomal protein L2 family	[more]
AT3G51190.1	6.4e-14	39.29	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 1..119 e-value: 1.4E-44 score: 164.0
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 1..117 e-value: 4.3E-39 score: 133.5
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 62..135 e-value: 1.8E-22 score: 81.3
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..61 e-value: 1.5E-23 score: 84.5
None	No IPR available	PANTHER	PTHR13691:SF5	39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL	coord: 1..130
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..130
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0158621.1	Cmc06g0158621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity