Cmc06g0149071 (gene) Melon (Charmono) v1.1

Overview
NameCmc06g0149071
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionMediator of RNA polymerase II transcription subunit 2-like
LocationCMiso1.1chr06: 1163866 .. 1165450 (+)
RNA-Seq ExpressionCmc06g0149071
SyntenyCmc06g0149071
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGAGCTAGGGTTTAAGAAGACTGACGTTGGGGATATCATCGAGCAAATTTCTGGCGGCAGATCAACAATATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGTAACGTCTAGTCATGGATTAATTTTTCGAATAATTTGTTTGTTCGTTCGTTCGTTCTAGTTGATTCACTTTTTTCGTGGTTCTTATGTAATGTTCTTACTTGCCGAATTGAATAGGGGAAAAACAAGAAAAAGAAAAGGCTGCAAAGAAGCTTCAAGCAAAGAAGAATAACATGAAAGTAAATCTTTCTCTTTCACTCTATTGAATCCAGAAGAGTAGAATTCATTTACAGAAAAATGTCCAAGTATTAGGGGAAGAGAATGAATGATTATTGTTTCTATTCGGTTTACACTTTAGTAATTTAGGAATTTCATCATATGAGTAATTTTCTAGTTTTTACATGCTCCAGTAGGATTGTGAAGTTCAATGACTTTCTACTGCTTAATTTGTTGGGTAATTTGGCAATTTTCGATGGATTTGAAACAAGTTCTGTTTGTTTGTGTGCTTGTTCTTTTAATATCATTCGAAAGTCTCGTGATTTTCGTATAATTTTGTTCATAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCTCAAGCTATGGACCTTGATAAATGAGGTTTGATATGTATATTTTTTGGCCTTGTATGGATGAATTGACATATTGATTTAGTTTTTTATATTTGTAATAGAAAGAAAAAACCTCCATTCGTAGTACGCTTTGATCTTCACTCGCTCTCTTTTGATCTCTAATGTGTTGAGTACTGATTCGAATCTGATTTACAAGAGATTCTTATTCATTATCTAATACGAAATGCAAATTTAAAGAAAATGTTCCATCATTTGAACTCGGAAATTTGTTTGCTCTGTCAAGAATATCTCTTTCTTTTTCTTGCTTTCTTAGGTGTTCAAACAAAAAGTAAGCCCATCATCTCAATCTTGAATCATATTACTAGCAGTATCGGATCATTTCATGTCTTCATGAGTGTCTTCTAATGTGAATGTCTTTAGAAACTCGAATTATAATGTATCTGGTCGTCTAGTTTGAACTGGAAATTGGGTTGTGTCGTTTGATCCATGAAACTGTTTTTGTTATCATGTCTTTAGGTTGGCAATGGGCGCAGAGGCCGAATCTTCAGGGTACCCCATTAGCCCTTCTTTTGGAGAAAATCTGGTGAAATGCATTGGCATTATTTGAACTGAAGTAATTTATCATTGAAGATCCAATTCGTCTCATTCTTTTAGATCGTAGTCCCTTTCTTGTAATCTAATTCGAGTAGAACTCATTCGACATTTTTCCTTCTTTTTGGTATCTCCTTGTAAATTATTTCATATTTTTCAATGAAAGCTCCATTTTTTTTCAAAAAAACATATGGCTTATGGGTTTTACATTGAGCTTTTGTGTTCATATCCAAGAGTTCATTTGCTATTGAGCTGCTTCATCTTT

mRNA sequence

TTTGAGCTAGGGTTTAAGAAGACTGACGTTGGGGATATCATCGAGCAAATTTCTGGCGGCAGATCAACAATATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGTAACGGGAAAAACAAGAAAAAGAAAAGGCTGCAAAGAAGCTTCAAGCAAAGAAGAATAACATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCTCAAGCTATGGACCTTGATAAATGAGGTTGGCAATGGGCGCAGAGGCCGAATCTTCAGGGTACCCCATTAGCCCTTCTTTTGGAGAAAATCTGGTGAAATGCATTGGCATTATTTGAACTGAAGTAATTTATCATTGAAGATCCAATTCGTCTCATTCTTTTAGATCGTAGTCCCTTTCTTGTAATCTAATTCGAGTAGAACTCATTCGACATTTTTCCTTCTTTTTGGTATCTCCTTGTAAATTATTTCATATTTTTCAATGAAAGCTCCATTTTTTTTCAAAAAAACATATGGCTTATGGGTTTTACATTGAGCTTTTGTGTTCATATCCAAGAGTTCATTTGCTATTGAGCTGCTTCATCTTT

Coding sequence (CDS)

ATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCTCAAGCTATGGACCTTGATAAATGA

Protein sequence

MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK
Homology
BLAST of Cmc06g0149071 vs. NCBI nr
Match: KAA0048973.1 (mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0

Query: 1  MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
          MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK
Sbjct: 39 MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 81

BLAST of Cmc06g0149071 vs. NCBI nr
Match: KGN56523.1 (hypothetical protein Csa_010072 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 1  MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
          MKVDGSGKKKKGGGGFQVGKKKVKTKLTA AKAKASQAM+LDK
Sbjct: 39 MKVDGSGKKKKGGGGFQVGKKKVKTKLTATAKAKASQAMELDK 81

BLAST of Cmc06g0149071 vs. NCBI nr
Match: XP_022941890.1 (uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 uncharacterized protein LOC111473288 [Cucurbita maxima] >XP_023540792.1 uncharacterized protein LOC111801059 [Cucurbita pepo subsp. pepo] >KAG6597121.1 hypothetical protein SDJN03_10301, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028585.1 hypothetical protein SDJN02_09766 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 4.8e-10
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 1  MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
          MKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKA+QAM+LDK
Sbjct: 39 MKVDGSGKKKKGGAGFQVGKKKVKTKLTAAAKAKAAQAMELDK 81

BLAST of Cmc06g0149071 vs. NCBI nr
Match: XP_022147302.1 (uncharacterized protein LOC111016287 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-10
Identity = 39/43 (90.70%), Postives = 43/43 (100.00%), Query Frame = 0

Query: 1  MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
          MKVDGSGK+KKGGGGFQVGKKKVKTKLTAAAKAKA+QAM+LD+
Sbjct: 39 MKVDGSGKQKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDQ 81

BLAST of Cmc06g0149071 vs. NCBI nr
Match: KCW78058.1 (hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis])

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 0

Query: 1   MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
           MKVDGSGKKKKG GGFQVGK+KVKTKLTA AKAKA+QAM+LDK
Sbjct: 80  MKVDGSGKKKKGAGGFQVGKRKVKTKLTALAKAKAAQAMELDK 122

BLAST of Cmc06g0149071 vs. ExPASy TrEMBL
Match: A0A5A7TZC8 (Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001950 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-12
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0

Query: 1  MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
          MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK
Sbjct: 39 MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 81

BLAST of Cmc06g0149071 vs. ExPASy TrEMBL
Match: A0A0A0L493 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.1e-11
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 1  MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
          MKVDGSGKKKKGGGGFQVGKKKVKTKLTA AKAKASQAM+LDK
Sbjct: 39 MKVDGSGKKKKGGGGFQVGKKKVKTKLTATAKAKASQAMELDK 81

BLAST of Cmc06g0149071 vs. ExPASy TrEMBL
Match: A0A6J1IED7 (uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 1  MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
          MKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKA+QAM+LDK
Sbjct: 39 MKVDGSGKKKKGGAGFQVGKKKVKTKLTAAAKAKAAQAMELDK 81

BLAST of Cmc06g0149071 vs. ExPASy TrEMBL
Match: A0A6J1FV29 (uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC111447114 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0

Query: 1  MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
          MKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKA+QAM+LDK
Sbjct: 39 MKVDGSGKKKKGGAGFQVGKKKVKTKLTAAAKAKAAQAMELDK 81

BLAST of Cmc06g0149071 vs. ExPASy TrEMBL
Match: A0A6J1D208 (uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016287 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-10
Identity = 39/43 (90.70%), Postives = 43/43 (100.00%), Query Frame = 0

Query: 1  MKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLDK 44
          MKVDGSGK+KKGGGGFQVGKKKVKTKLTAAAKAKA+QAM+LD+
Sbjct: 39 MKVDGSGKQKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDQ 81

BLAST of Cmc06g0149071 vs. TAIR 10
Match: AT2G45860.1 (unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.0e-05
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  KVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMDLD 43
          K+   G  KK  GGF VGKKK+KTKLT  AKAKA+QAM+LD
Sbjct: 38 KMKVDGSGKKKKGGFSVGKKKLKTKLTPTAKAKAAQAMELD 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0048973.11.5e-11100.00mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. ma... [more]
KGN56523.11.3e-1095.35hypothetical protein Csa_010072 [Cucumis sativus][more]
XP_022941890.14.8e-1093.02uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 unchar... [more]
XP_022147302.18.2e-1090.70uncharacterized protein LOC111016287 [Momordica charantia][more]
KCW78058.14.1e-0988.37hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TZC87.2e-12100.00Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. ... [more]
A0A0A0L4936.1e-1195.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1[more]
A0A6J1IED72.3e-1093.02uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288... [more]
A0A6J1FV292.3e-1093.02uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC1114471... [more]
A0A6J1D2084.0e-1090.70uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
Match NameE-valueIdentityDescription
AT2G45860.11.0e-0565.85unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR36745OS02G0824400 PROTEINcoord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc06g0149071.1Cmc06g0149071.1mRNA