Cmc05g0143491 (gene) Melon (Charmono) v1.1

Overview
NameCmc05g0143491
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
LocationCMiso1.1chr05: 27092129 .. 27092859 (+)
RNA-Seq ExpressionCmc05g0143491
SyntenyCmc05g0143491
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTTGAATATTTCTTGATTCTTTTTTATTATTATTCAAACATTCAAACTCATTATTTTTCTCTCCCCCGCGGCTTGTCTCAGTCAACGCCAAAAATCACTTTTCTACTCAAAACCCTTCATACCTTTTTCCTCTATATATACAAAACGCTGCAAAATCTCCCCTTTCAACAACAAAACCAATACTTTTTTCTCTCACATATGGCTTTCTCTCTTGTGAAGACGGTTGCTTTTCTTTTCATTTTTCTTTCCATTTTCGACGTCTCGGTTGGACGGTGGCTTCCGGGGTCAAGGGTTCCCATCGCAGTGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAATCCATGTTCCTTTATTCCGGGGTTTAGTCGGGGCCGGTGTACGTTGAGCGAGGTGGACGACGGTGCTGCCAGTGTTCATGGTGGCTCCTCCGCGTTCCCGGGCTTGAATGCTGATGGGTTTGCAGCGGCTTCTATGGTTAATCAAACACAGAAGCAAGATTCTTCTTTGAGCTCTTGAATGATGTTATGAAGTTTGTGTATAGTTTTTTTTTTTTTTTTTTCATATTTAATTTATTTTATTTGTTTTTAATGAGTGAGAATTGATGATGTAATTGGATTGGCCAAAATTTTCCATTCTTTTGTTTTTTAAATTACTAAAGGAAAATTGTTGAATATGAAATGATATGGAGTTTCAAAAGAAAACCAAAGAATGTTTGTTGATGATCA

mRNA sequence

ATGGGTGTTGAATATTTCTTGATTCTTTTTTATTATTATTCAAACATTCAAACTCATTATTTTTCTCTCCCCCGCGGCTTGTCTCAGTCAACGCCAAAAATCACTTTTCTACTCAAAACCCTTCATACCTTTTTCCTCTATATATACAAAACGCTGCAAAATCTCCCCTTTCAACAACAAAACCAATACTTTTTTCTCTCACATATGGCTTTCTCTCTTGTGAAGACGGTTGCTTTTCTTTTCATTTTTCTTTCCATTTTCGACGTCTCGGTTGGACGGTGGCTTCCGGGGTCAAGGGTTCCCATCGCAGTGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAATCCATGTTCCTTTATTCCGGGGTTTAGTCGGGGCCGGTGTACGTTGAGCGAGGTGGACGACGGTGCTGCCAGTGTTCATGGTGGCTCCTCCGCGTTCCCGGGCTTGAATGCTGATGGGTTTGCAGCGGCTTCTATGGTTAATCAAACACAGAAGCAAGATTCTTCTTTGAGCTCTTGAATGATGTTATGAAGTTTGTGTATAGTTTTTTTTTTTTTTTTTTCATATTTAATTTATTTTATTTGTTTTTAATGAGTGAGAATTGATGATGTAATTGGATTGGCCAAAATTTTCCATTCTTTTGTTTTTTAAATTACTAAAGGAAAATTGTTGAATATGAAATGATATGGAGTTTCAAAAGAAAACCAAAGAATGTTTGTTGATGATCA

Coding sequence (CDS)

ATGGGTGTTGAATATTTCTTGATTCTTTTTTATTATTATTCAAACATTCAAACTCATTATTTTTCTCTCCCCCGCGGCTTGTCTCAGTCAACGCCAAAAATCACTTTTCTACTCAAAACCCTTCATACCTTTTTCCTCTATATATACAAAACGCTGCAAAATCTCCCCTTTCAACAACAAAACCAATACTTTTTTCTCTCACATATGGCTTTCTCTCTTGTGAAGACGGTTGCTTTTCTTTTCATTTTTCTTTCCATTTTCGACGTCTCGGTTGGACGGTGGCTTCCGGGGTCAAGGGTTCCCATCGCAGTGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAATCCATGTTCCTTTATTCCGGGGTTTAGTCGGGGCCGGTGTACGTTGAGCGAGGTGGACGACGGTGCTGCCAGTGTTCATGGTGGCTCCTCCGCGTTCCCGGGCTTGAATGCTGATGGGTTTGCAGCGGCTTCTATGGTTAATCAAACACAGAAGCAAGATTCTTCTTTGAGCTCTTGA

Protein sequence

MGVEYFLILFYYYSNIQTHYFSLPRGLSQSTPKITFLLKTLHTFFLYIYKTLQNLPFQQQNQYFFLSHMAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS
Homology
BLAST of Cmc05g0143491 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-48
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 69  MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC 128
           MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC 60

Query: 129 TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 174
           TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS
Sbjct: 61  TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

BLAST of Cmc05g0143491 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-39
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 69  MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 128
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 129 FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 174
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of Cmc05g0143491 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-28
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 93  RWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAASVHGGSSAFPGLNA 152
           RWLP  RVP+A+LRG VPSSSRNPCSFIPGFSRGRCTLSE DDGAA+VHGGSSA  GLNA
Sbjct: 11  RWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHGGSSALSGLNA 70

Query: 153 DGFAAASMVNQTQKQDSSL 172
           DGFAAASM N+TQK+D SL
Sbjct: 71  DGFAAASMANKTQKKDPSL 89

BLAST of Cmc05g0143491 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 7.6e-22
Identity = 69/110 (62.73%), Postives = 77/110 (70.00%), Query Frame = 0

Query: 69  MAFSLVKT--VAFLFIFLSIFDVSVGRWLPGSR---VPIAVLRGPVPSSSRNPCSFIPGF 128
           M FS++KT   AF+FI L IF VS  R L G R   V   +LRG VP S RNPCSFIPG 
Sbjct: 1   MPFSVMKTPAAAFVFILLCIFHVSAARVLTGERWRPVSDRMLRGLVPPSGRNPCSFIPGL 60

Query: 129 SRGRCTLSEVDD--GAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSL 172
            RGRCTLSEV+D  G     GGSSAFPG+N DGF+AA+MVN TQKQD SL
Sbjct: 61  GRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSL 110

BLAST of Cmc05g0143491 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 68.2 bits (165), Expect = 8.1e-08
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 93  RWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAASVHGGSSAFPGLNA 152
           +WL  + +  ++ RGPVP S  NPC+FIPG +RGRCTLSE+D         ++AFP +  
Sbjct: 41  QWLAKNLIVQSLQRGPVPPSGGNPCTFIPGRNRGRCTLSEMDVAGQFPRAPAAAFPDIVV 100

Query: 153 DGFAAA---SMVNQTQKQDSS 171
           D  A     S  N+TQKQDSS
Sbjct: 101 DFGAVTAGNSGANETQKQDSS 121

BLAST of Cmc05g0143491 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 7.8e-49
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 69  MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC 128
           MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC 60

Query: 129 TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 174
           TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS
Sbjct: 61  TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

BLAST of Cmc05g0143491 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 6.6e-40
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 69  MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 128
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 129 FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 174
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of Cmc05g0143491 vs. ExPASy TrEMBL
Match: A0A5B6Z868 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-05
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 100 VPIAVL-RGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAAS--VHGGSSAFPGLNADGFA 159
           +PI  L RGPVPSS  NPC++IPG   GRCTL+E +   A   V     AFP    + FA
Sbjct: 43  LPIQSLQRGPVPSSGSNPCTYIPGRGTGRCTLAENEMNFAGELVAHAPPAFPDFMVN-FA 102

Query: 160 AASMVNQTQKQDS 170
           AAS  N TQK+D+
Sbjct: 103 AASKANDTQKKDT 114

BLAST of Cmc05g0143491 vs. ExPASy TrEMBL
Match: A0A6A3B4G4 (Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110321pilonHSYRG00407 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.9e-05
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 106 RGPVPSSSRNPCSFIPGFSRGRCTLSEVD----DGAASVHGGSSAFPGLNADGFAAASMV 165
           RGPVP S+ NPC+ IPG SRGRCTL+E++    DG A+ H    AFP       +A++ +
Sbjct: 53  RGPVPPSAGNPCTNIPGRSRGRCTLTEMNTVGGDGVAAYHAAPPAFPEFVVKFASASAGI 112

Query: 166 NQTQKQ 168
           N T K+
Sbjct: 113 NGTDKK 118

BLAST of Cmc05g0143491 vs. ExPASy TrEMBL
Match: A0A6A4KR04 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_20131 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0

Query: 106 RGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAAS--VHGGSSAFPGLNADGFAAASMVNQ 165
           RGPV  S  NPC++IPG  RGRCTL+E +   +    H    AFPG+    FA AS  N 
Sbjct: 47  RGPVTPSGSNPCTYIPGGKRGRCTLAENESNYSGRVGHAAPPAFPGVMVK-FAPASTAND 106

Query: 166 TQKQDSS 171
           ++KQD S
Sbjct: 107 SRKQDGS 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0063581.11.6e-48100.00hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KGN60782.11.4e-3982.88hypothetical protein Csa_019261 [Cucumis sativus][more]
KAG6599331.14.1e-2883.54hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586324.17.6e-2262.73hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021888699.18.1e-0846.91uncharacterized protein LOC110807772 [Carica papaya][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VCY27.8e-49100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJ846.6e-4082.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1[more]
A0A5B6Z8685.3e-0550.68Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1[more]
A0A6A3B4G46.9e-0546.97Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1 OS=Hibiscus sy... [more]
A0A6A4KR041.5e-0447.76Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 76..167
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 76..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc05g0143491.1Cmc05g0143491.1mRNA