Cmc05g0141971 (gene) Melon (Charmono) v1.1

Overview
NameCmc05g0141971
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionSelenium binding protein-like protein
LocationCMiso1.1chr05: 25890753 .. 25891462 (+)
RNA-Seq ExpressionCmc05g0141971
SyntenyCmc05g0141971
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAACGATCAGCCCAAAGAAGCTTTAAGATTGTTCAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACTGCCTTGGCTGCAGCTGCTCATTGTAGGGATATCTGTACTGGGAAGCTGGTCCGCAATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCTCGCTTCAATGTAATACTTGCAACTGCAATCATGGACATGTATGCAAAATGTGGCAAGTTGGTGACTGCACGGAATATGTTTGACAAGATGCCTCAAAGAAACTTGGTTGTTTGGAATTCAATGGTTAGTGCTTACAGTCAATATGGTCGAGGAGCAGAGGCTTTGCGTCTTTTCGTTGACATGGAACTGGCTGGGTTTGTTCCTAATAAAGCAACGTTTTTTAGTGTGATAAGAGCTTACACCCATCTGGGGTTTTGATCAACAGGACGAAGTTTACATGCTCGTGTGTTGAAAGCAGATTTCCATGAGCCATTGGAACTGCTCTTGTGGACATGTATGCCAAAGGTGAACGTGAGTTGGAAGAGGGGCCGACAGTCAGTAACTATTAAGCTAACTGTAAATATTGAAAATTAAATAGTTTTTTTTATATATATATTATATAAAGATAATAAAGTTGAAGAGAGCTTGAGCTCT

mRNA sequence

ATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAACGATCAGCCCAAAGAAGCTTTAAGATTGTTCAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACTGCCTTGGCTGCAGCTGCTCATTGTAGGGATATCTGTACTGGGAAGCTGGTCCGCAATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCTCGCTTCAATGTAATACTTGCAACTGCAATCATGGACATGTATGCAAAATGTGGCAAGTTGGTGACTGCACGGAATATGTTTGACAAGATGCCTCAAAGAAACTTGGTTGTTTGGAATTCAATGGTTAGTGCTTACAGTCAATATGGTCGAGGAGCAGAGGCTTTGCGTCTTTTCGTTGACATGGAACTGGCTGGGTTTGTTCCTAATAAAGCAACGTTTTTTAGTGTGATAAGAGCTTACACCCATCTGGGGTTTTGATCAACAGGACGAAGTTTACATGCTCGTGTGTTGAAAGCAGATTTCCATGAGCCATTGGAACTGCTCTTGTGGACATGTATGCCAAAGGTGAACGTGAGTTGGAAGAGGGGCCGACAGTCAGTAACTATTAAGCTAACTGTAAATATTGAAAATTAAATAGTTTTTTTTATATATATATTATATAAAGATAATAAAGTTGAAGAGAGCTTGAGCTCT

Coding sequence (CDS)

ATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAACGATCAGCCCAAAGAAGCTTTAAGATTGTTCAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACTGCCTTGGCTGCAGCTGCTCATTGTAGGGATATCTGTACTGGGAAGCTGGTCCGCAATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCTCGCTTCAATGTAATACTTGCAACTGCAATCATGGACATGTATGCAAAATGTGGCAAGTTGGTGACTGCACGGAATATGTTTGACAAGATGCCTCAAAGAAACTTGGTTGTTTGGAATTCAATGGTTAGTGCTTACAGTCAATATGGTCGAGGAGCAGAGGCTTTGCGTCTTTTCGTTGACATGGAACTGGCTGGGTTTGTTCCTAATAAAGCAACGTTTTTTAGTGTGATAAGAGCTTACACCCATCTGGGGTTTTGA

Protein sequence

MECGRLDFLNCRVCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMELAGFVPNKATFFSVIRAYTHLGF
Homology
[Close]
BLAST of Cmc05g0141971 vs. NCBI nr
Match: XP_016901472.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 6.3e-87
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MECGRLDFLNCRVCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLV 60
           MECGRLDFLNCRVCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLV
Sbjct: 1   MECGRLDFLNCRVCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLV 60

Query: 61  RNRLRQLGFDPFDTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSA 120
           RNRLRQLGFDPFDTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSA
Sbjct: 61  RNRLRQLGFDPFDTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSA 120

Query: 121 YSQYGRGAEALRLFVDMELAGFVPNKATFFSVIRAYTHLGF 162
           YSQYGRGAEALRLFVDMELAGFVPNKATFFSVIRAYTHLGF
Sbjct: 121 YSQYGRGAEALRLFVDMELAGFVPNKATFFSVIRAYTHLGF 161

[Close]
BLAST of Cmc05g0141971 vs. NCBI nr
Match: TYK18325.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.2 bits (692), Expect = 5.9e-69
Identity = 132/141 (93.62%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 20  QRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFN 79
           + + ++ +DMENEGVEPNEITMTTALAAAAHCRDI TGKLVRNRLRQLGFDPFDTNSRFN
Sbjct: 106 KEALRLFKDMENEGVEPNEITMTTALAAAAHCRDIYTGKLVRNRLRQLGFDPFDTNSRFN 165

Query: 80  VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL 139
           VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL
Sbjct: 166 VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL 225

Query: 140 AGFVPNKATFFSVIRAYTHLG 161
           AGFVPNKATFFSVIRAYTHLG
Sbjct: 226 AGFVPNKATFFSVIRAYTHLG 246

[Close]
BLAST of Cmc05g0141971 vs. NCBI nr
Match: KAA0047950.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-68
Identity = 136/155 (87.74%), Postives = 142/155 (91.61%), Query Frame = 0 

Query: 13  VCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPF 72
           VCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPF
Sbjct: 93  VCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPF 152

Query: 73  DTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALR 132
           DTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALR
Sbjct: 153 DTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALR 212

Query: 133 LFVDMELAGFVPNKA-------TFFSVIRAYTHLG 161
           LFVDMELAG +  +A       T+ +V+ A +HLG
Sbjct: 213 LFVDMELAGRMEEEAEVASDQITYIAVLWACSHLG 247

[Close]
BLAST of Cmc05g0141971 vs. NCBI nr
Match: XP_004139361.1 (putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 4.8e-63
Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 0 

Query: 20  QRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFN 79
           + + ++ +DMENEGVEPNEITMTTALAAAA CRDI TGKLV +RLRQLGFDPFDTNS FN
Sbjct: 188 KEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFN 247

Query: 80  VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL 139
           VILATAIMDMYAKCGKLVTARN+FDKMPQRNLVVWNSM+SAYSQYGRGAEALRLFVDME+
Sbjct: 248 VILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEM 307

Query: 140 AGFVPNKATFFSVIRAYTHLGF 162
           AGFVPNKATF SVI A TH+GF
Sbjct: 308 AGFVPNKATFLSVISACTHMGF 329

[Close]
BLAST of Cmc05g0141971 vs. NCBI nr
Match: XP_008454853.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis melo] >AAO45757.1 selenium binding protein-like protein [Cucumis melo subsp. melo] >KAA0047953.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.8e-62
Identity = 123/142 (86.62%), Postives = 131/142 (92.25%), Query Frame = 0 

Query: 20  QRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFN 79
           + + ++ +DMENEGVEPNEITMTTALAAAA CRDI TGKLVR RLRQLG DPF TNSRFN
Sbjct: 188 KEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFN 247

Query: 80  VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL 139
           VILATAIMDMYAKCGKLVTARN+FDKMPQRNLVVWNSM+SA+SQYGRGAEALRLFVDMEL
Sbjct: 248 VILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMEL 307

Query: 140 AGFVPNKATFFSVIRAYTHLGF 162
           AGFVPNKATF SVIRA THL F
Sbjct: 308 AGFVPNKATFLSVIRACTHLRF 329

[Close]
BLAST of Cmc05g0141971 vs. ExPASy Swiss-Prot
Match: Q9MA95 (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-31
Identity = 69/130 (53.08%), Postives = 88/130 (67.69%), Query Frame = 0 

Query: 27  QDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDP-FDTNSRFNVILATA 86
           ++M++ GV+ NE  M   L A   C+DI TGK     L+ LGFDP F +   FNVILAT+
Sbjct: 197 REMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATS 256

Query: 87  IMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMELAGFVPN 146
           ++DMYAKCG L TAR +FD MP+R LV WNS+++ YSQ G   EAL +F+DM   G  P+
Sbjct: 257 LIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPD 316

Query: 147 KATFFSVIRA 156
           K TF SVIRA
Sbjct: 317 KVTFLSVIRA 326

[Close]
BLAST of Cmc05g0141971 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.2e-21
Identity = 48/139 (34.53%), Postives = 79/139 (56.83%), Query Frame = 0 

Query: 22  SFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFNVI 81
           +  + ++M+     PN +T+T  L+A A    +  GK V + +R   F+        ++ 
Sbjct: 404 AISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFES-------SIY 463

Query: 82  LATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMELAG 141
           ++TA++ MYAKCG +  AR +FD M ++N V WN+M+S Y  +G+G EAL +F +M  +G
Sbjct: 464 VSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG 523

Query: 142 FVPNKATFFSVIRAYTHLG 161
             P   TF  V+ A +H G
Sbjct: 524 ITPTPVTFLCVLYACSHAG 535

[Close]
BLAST of Cmc05g0141971 vs. ExPASy Swiss-Prot
Match: Q56X05 (Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 6.8e-20
Identity = 51/146 (34.93%), Postives = 80/146 (54.79%), Query Frame = 0 

Query: 15  EQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDT 74
           + +  + +  +   M  EG+ P+E+TM+T ++A AH   +  GK V     Q GF     
Sbjct: 264 QNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGF----- 323

Query: 75  NSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLF 134
               +V + +A++DMY+KCG L  A  +F  +P++NL  WNS++   + +G   EAL++F
Sbjct: 324 --VLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMF 383

Query: 135 VDMELAGFVPNKATFFSVIRAYTHLG 161
             ME+    PN  TF SV  A TH G
Sbjct: 384 AKMEMESVKPNAVTFVSVFTACTHAG 402

[Close]
BLAST of Cmc05g0141971 vs. ExPASy Swiss-Prot
Match: Q9LW32 (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.9e-20
Identity = 49/132 (37.12%), Postives = 80/132 (60.61%), Query Frame = 0 

Query: 29  MENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFNVILATAIMD 88
           ++N+ V  N IT++T L A +H   +  GK + +++ ++G +        +VI+ T+I+D
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED-------DVIVGTSIID 337

Query: 89  MYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMELAGFVPNKAT 148
           MY KCG++ TAR  FD+M  +N+  W +M++ Y  +G  A+AL LF  M  +G  PN  T
Sbjct: 338 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 397

Query: 149 FFSVIRAYTHLG 161
           F SV+ A +H G
Sbjct: 398 FVSVLAACSHAG 402

[Close]
BLAST of Cmc05g0141971 vs. ExPASy Swiss-Prot
Match: O64705 (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 7.6e-19
Identity = 48/144 (33.33%), Postives = 83/144 (57.64%), Query Frame = 0 

Query: 19  AQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNR--LRQLGFDPFDTNS 78
           A+ +  + + ME EG EP+E T+ + L A +H  D+ TG+L+      +++G   F    
Sbjct: 214 AKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTF---- 273

Query: 79  RFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVD 138
                L + ++ MY KCG L +AR +F++M +++ V W +M++ YSQ G+ +EA +LF +
Sbjct: 274 -----LGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFE 333

Query: 139 MELAGFVPNKATFFSVIRAYTHLG 161
           ME  G  P+  T  +V+ A   +G
Sbjct: 334 MEKTGVSPDAGTLSTVLSACGSVG 348

[Close]
BLAST of Cmc05g0141971 vs. ExPASy TrEMBL
Match: A0A1S4DZQ0 (putative pentatricopeptide repeat-containing protein At3g05240 OS=Cucumis melo OX=3656 GN=LOC107991267 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.0e-87
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MECGRLDFLNCRVCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLV 60
           MECGRLDFLNCRVCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLV
Sbjct: 1   MECGRLDFLNCRVCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLV 60

Query: 61  RNRLRQLGFDPFDTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSA 120
           RNRLRQLGFDPFDTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSA
Sbjct: 61  RNRLRQLGFDPFDTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSA 120

Query: 121 YSQYGRGAEALRLFVDMELAGFVPNKATFFSVIRAYTHLGF 162
           YSQYGRGAEALRLFVDMELAGFVPNKATFFSVIRAYTHLGF
Sbjct: 121 YSQYGRGAEALRLFVDMELAGFVPNKATFFSVIRAYTHLGF 161

[Close]
BLAST of Cmc05g0141971 vs. ExPASy TrEMBL
Match: A0A5D3D457 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00360 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.8e-69
Identity = 132/141 (93.62%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 20  QRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFN 79
           + + ++ +DMENEGVEPNEITMTTALAAAAHCRDI TGKLVRNRLRQLGFDPFDTNSRFN
Sbjct: 106 KEALRLFKDMENEGVEPNEITMTTALAAAAHCRDIYTGKLVRNRLRQLGFDPFDTNSRFN 165

Query: 80  VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL 139
           VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL
Sbjct: 166 VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL 225

Query: 140 AGFVPNKATFFSVIRAYTHLG 161
           AGFVPNKATFFSVIRAYTHLG
Sbjct: 226 AGFVPNKATFFSVIRAYTHLG 246

[Close]
BLAST of Cmc05g0141971 vs. ExPASy TrEMBL
Match: A0A5A7TXN3 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00100 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.3e-69
Identity = 136/155 (87.74%), Postives = 142/155 (91.61%), Query Frame = 0 

Query: 13  VCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPF 72
           VCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPF
Sbjct: 93  VCEQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPF 152

Query: 73  DTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALR 132
           DTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALR
Sbjct: 153 DTNSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALR 212

Query: 133 LFVDMELAGFVPNKA-------TFFSVIRAYTHLG 161
           LFVDMELAG +  +A       T+ +V+ A +HLG
Sbjct: 213 LFVDMELAGRMEEEAEVASDQITYIAVLWACSHLG 247

[Close]
BLAST of Cmc05g0141971 vs. ExPASy TrEMBL
Match: A0A0A0LIL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021600 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.3e-63
Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 0 

Query: 20  QRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFN 79
           + + ++ +DMENEGVEPNEITMTTALAAAA CRDI TGKLV +RLRQLGFDPFDTNS FN
Sbjct: 188 KEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFN 247

Query: 80  VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL 139
           VILATAIMDMYAKCGKLVTARN+FDKMPQRNLVVWNSM+SAYSQYGRGAEALRLFVDME+
Sbjct: 248 VILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEM 307

Query: 140 AGFVPNKATFFSVIRAYTHLGF 162
           AGFVPNKATF SVI A TH+GF
Sbjct: 308 AGFVPNKATFLSVISACTHMGF 329

[Close]
BLAST of Cmc05g0141971 vs. ExPASy TrEMBL
Match: A0A5A7TWI8 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00130 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.9e-63
Identity = 123/142 (86.62%), Postives = 131/142 (92.25%), Query Frame = 0 

Query: 20  QRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFN 79
           + + ++ +DMENEGVEPNEITMTTALAAAA CRDI TGKLVR RLRQLG DPF TNSRFN
Sbjct: 188 KEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFN 247

Query: 80  VILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMEL 139
           VILATAIMDMYAKCGKLVTARN+FDKMPQRNLVVWNSM+SA+SQYGRGAEALRLFVDMEL
Sbjct: 248 VILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMEL 307

Query: 140 AGFVPNKATFFSVIRAYTHLGF 162
           AGFVPNKATF SVIRA THL F
Sbjct: 308 AGFVPNKATFLSVIRACTHLRF 329

[Close]
BLAST of Cmc05g0141971 vs. TAIR 10
Match: AT3G05240.1 (mitochondrial editing factor 19 )

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-32
Identity = 69/130 (53.08%), Postives = 88/130 (67.69%), Query Frame = 0 

Query: 27  QDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDP-FDTNSRFNVILATA 86
           ++M++ GV+ NE  M   L A   C+DI TGK     L+ LGFDP F +   FNVILAT+
Sbjct: 197 REMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATS 256

Query: 87  IMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMELAGFVPN 146
           ++DMYAKCG L TAR +FD MP+R LV WNS+++ YSQ G   EAL +F+DM   G  P+
Sbjct: 257 LIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPD 316

Query: 147 KATFFSVIRA 156
           K TF SVIRA
Sbjct: 317 KVTFLSVIRA 326

[Close]
BLAST of Cmc05g0141971 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.4e-22
Identity = 48/139 (34.53%), Postives = 79/139 (56.83%), Query Frame = 0 

Query: 22  SFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFNVI 81
           +  + ++M+     PN +T+T  L+A A    +  GK V + +R   F+        ++ 
Sbjct: 404 AISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFES-------SIY 463

Query: 82  LATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMELAG 141
           ++TA++ MYAKCG +  AR +FD M ++N V WN+M+S Y  +G+G EAL +F +M  +G
Sbjct: 464 VSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG 523

Query: 142 FVPNKATFFSVIRAYTHLG 161
             P   TF  V+ A +H G
Sbjct: 524 ITPTPVTFLCVLYACSHAG 535

[Close]
BLAST of Cmc05g0141971 vs. TAIR 10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 4.9e-21
Identity = 51/146 (34.93%), Postives = 80/146 (54.79%), Query Frame = 0 

Query: 15   EQRSAQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDT 74
            + +  + +  +   M  EG+ P+E+TM+T ++A AH   +  GK V     Q GF     
Sbjct: 1009 QNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGF----- 1068

Query: 75   NSRFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLF 134
                +V + +A++DMY+KCG L  A  +F  +P++NL  WNS++   + +G   EAL++F
Sbjct: 1069 --VLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMF 1128

Query: 135  VDMELAGFVPNKATFFSVIRAYTHLG 161
              ME+    PN  TF SV  A TH G
Sbjct: 1129 AKMEMESVKPNAVTFVSVFTACTHAG 1147

[Close]
BLAST of Cmc05g0141971 vs. TAIR 10
Match: AT3G26782.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 98.2 bits (243), Expect = 6.4e-21
Identity = 49/132 (37.12%), Postives = 80/132 (60.61%), Query Frame = 0 

Query: 29  MENEGVEPNEITMTTALAAAAHCRDICTGKLVRNRLRQLGFDPFDTNSRFNVILATAIMD 88
           ++N+ V  N IT++T L A +H   +  GK + +++ ++G +        +VI+ T+I+D
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED-------DVIVGTSIID 337

Query: 89  MYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVDMELAGFVPNKAT 148
           MY KCG++ TAR  FD+M  +N+  W +M++ Y  +G  A+AL LF  M  +G  PN  T
Sbjct: 338 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 397

Query: 149 FFSVIRAYTHLG 161
           F SV+ A +H G
Sbjct: 398 FVSVLAACSHAG 402

[Close]
BLAST of Cmc05g0141971 vs. TAIR 10
Match: AT2G34400.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 5.4e-20
Identity = 48/144 (33.33%), Postives = 83/144 (57.64%), Query Frame = 0 

Query: 19  AQRSFKIVQDMENEGVEPNEITMTTALAAAAHCRDICTGKLVRNR--LRQLGFDPFDTNS 78
           A+ +  + + ME EG EP+E T+ + L A +H  D+ TG+L+      +++G   F    
Sbjct: 214 AKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTF---- 273

Query: 79  RFNVILATAIMDMYAKCGKLVTARNMFDKMPQRNLVVWNSMVSAYSQYGRGAEALRLFVD 138
                L + ++ MY KCG L +AR +F++M +++ V W +M++ YSQ G+ +EA +LF +
Sbjct: 274 -----LGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFE 333

Query: 139 MELAGFVPNKATFFSVIRAYTHLG 161
           ME  G  P+  T  +V+ A   +G
Sbjct: 334 MEKTGVSPDAGTLSTVLSACGSVG 348

The following BLAST results are available for this feature:
BLAST of Cmc05g0141971 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901472.16.3e-87100.00PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucum... [more]
TYK18325.15.9e-6993.62putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
KAA0047950.11.7e-6887.74putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_004139361.14.8e-6385.92putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis sativus][more]
XP_008454853.11.8e-6286.62PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucum... [more]
BLAST of Cmc05g0141971 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9MA951.7e-3153.08Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th... [more]
Q9SUH66.2e-2134.53Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
Q56X056.8e-2034.93Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX... [more]
Q9LW328.9e-2037.12Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidop... [more]
O647057.6e-1933.33Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX... [more]
BLAST of Cmc05g0141971 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DZQ03.0e-87100.00putative pentatricopeptide repeat-containing protein At3g05240 OS=Cucumis melo O... [more]
A0A5D3D4572.8e-6993.62Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A5A7TXN38.3e-6987.74Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A0A0LIL62.3e-6385.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021600 PE=4 SV=1[more]
A0A5A7TWI88.9e-6386.62Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
BLAST of Cmc05g0141971 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05240.11.2e-3253.08mitochondrial editing factor 19 [more]
AT4G30700.14.4e-2234.53Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G06150.14.9e-2134.93basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT3G26782.16.4e-2137.12Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G34400.15.4e-2033.33Pentatricopeptide repeat (PPR-like) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 8..73
e-value: 1.9E-5
score: 26.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 74..160
e-value: 3.7E-23
score: 83.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 84..112
e-value: 9.4E-4
score: 17.2
coord: 112..145
e-value: 3.7E-8
score: 31.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 110..156
e-value: 1.7E-9
score: 37.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 110..144
score: 11.893068
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 17..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc05g0141971.1Cmc05g0141971.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0080156 mitochondrial mRNA modification
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005515 protein binding