Cmc05g0140281 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0140281
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr05: 24736176 .. 24736853 (-)
RNA-Seq Expression	Cmc05g0140281
Synteny	Cmc05g0140281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACGAGGTTAGACTTTAGTATAGCCTTCCACCTACAAACTGATGGTCAGACTGAGCGTCTGAACCAAATTTTAGAGGATATGTTGCAAGCTTGCGCATTAGAATTCTCAGGTAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTTTCAAGCTACCATTGGCATGGCATTGTTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCTATTTGTTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTCCTAAGTTAGTTCAGTCTACTAACGAAGGGATACAAAACATTAGATCACGTATGCAGACCGCACATAGTAGACAGAAGAGTTATGCTGATGTGGGACGAAATGATCTTGAGTTTGGTGTGGGGGACAAAGTGTTTTTGAAAGTAGCACCTATGAAAGGTGTCTTACGATTTGAAGGGAGAGGAAAGTTGAGTCCTCGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGACTTGGCCCTGTGGCATATCGCTTGGCGTTGCCGCCATCACTCTCGACAGTTCATGACGTGTTCCGTGTTTCTATGTTGAGGAAGTATGTGTCAAATCCATCCCATATGGTAGATTACGAGCCATTGGAGATCGATGAAAATTTGAGCTATTCAGAACAACAAGTTGAGGTGTTGGCTAGGTAG

mRNA sequence

ATGGGCACGAGGTTAGACTTTAGTATAGCCTTCCACCTACAAACTGATGGTCAGACTGAGCGTCTGAACCAAATTTTAGAGGATATGTTGCAAGCTTGCGCATTAGAATTCTCAGGTAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTTTCAAGCTACCATTGGCATGGCATTGTTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCTATTTGTTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTCCTAAGTTAGTTCAGTCTACTAACGAAGGGATACAAAACATTAGATCACGTATGCAGACCGCACATAGTAGACAGAAGAGTTATGCTGATGTGGGACGAAATGATCTTGAGTTTGGTGTGGGGGACAAAGTGTTTTTGAAAGTAGCACCTATGAAAGGTGTCTTACGATTTGAAGGGAGAGGAAAGTTGAGTCCTCGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGACTTGGCCCTGTGGCATATCGCTTGGCGTTGCCGCCATCACTCTCGACAGTTCATGACGTGTTCCGTGTTTCTATGTTGAGGAAGTATGTGTCAAATCCATCCCATATGGTAGATTACGAGCCATTGGAGATCGATGAAAATTTGAGCTATTCAGAACAACAAGTTGAGGTGTTGGCTAGGTAG

Coding sequence (CDS)

ATGGGCACGAGGTTAGACTTTAGTATAGCCTTCCACCTACAAACTGATGGTCAGACTGAGCGTCTGAACCAAATTTTAGAGGATATGTTGCAAGCTTGCGCATTAGAATTCTCAGGTAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTTTCAAGCTACCATTGGCATGGCATTGTTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCTATTTGTTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTCCTAAGTTAGTTCAGTCTACTAACGAAGGGATACAAAACATTAGATCACGTATGCAGACCGCACATAGTAGACAGAAGAGTTATGCTGATGTGGGACGAAATGATCTTGAGTTTGGTGTGGGGGACAAAGTGTTTTTGAAAGTAGCACCTATGAAAGGTGTCTTACGATTTGAAGGGAGAGGAAAGTTGAGTCCTCGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGACTTGGCCCTGTGGCATATCGCTTGGCGTTGCCGCCATCACTCTCGACAGTTCATGACGTGTTCCGTGTTTCTATGTTGAGGAAGTATGTGTCAAATCCATCCCATATGGTAGATTACGAGCCATTGGAGATCGATGAAAATTTGAGCTATTCAGAACAACAAGTTGAGGTGTTGGCTAGGTAG

Protein sequence

MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATIGMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADVGRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLSTVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR

Homology

[Close]

BLAST of Cmc05g0140281 vs. NCBI nr
Match: TYJ96450.1 (retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 444.9 bits (1143), Expect = 4.2e-121
Identity = 219/225 (97.33%), Postives = 221/225 (98.22%), Query Frame = 0


Query: 1    MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
            MGTRLDFSIAFHLQTDGQTERLNQ+LEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI
Sbjct: 932  MGTRLDFSIAFHLQTDGQTERLNQVLEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 991

Query: 61   GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
            GMA FEALYGKCCRSPI WDEVGEQRLMGP+LVQSTNEGIQ IRSRMQTAHSRQKSYADV
Sbjct: 992  GMASFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEGIQKIRSRMQTAHSRQKSYADV 1051

Query: 121  GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
            GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPP LS
Sbjct: 1052 GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPLLS 1111

Query: 181  TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
            TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR
Sbjct: 1112 TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 1156

[Close]

BLAST of Cmc05g0140281 vs. NCBI nr
Match: KAA0042366.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 409.1 bits (1050), Expect = 2.5e-110
Identity = 199/225 (88.44%), Postives = 209/225 (92.89%), Query Frame = 0


Query: 1    MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
            MGTRLDFS AFHLQTDGQTERLNQ+LEDML+ACALEF  SWDSHLHLMEFAYNNS+QATI
Sbjct: 1129 MGTRLDFSTAFHLQTDGQTERLNQVLEDMLRACALEFPSSWDSHLHLMEFAYNNSYQATI 1188

Query: 61   GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
            GMA FEALYGKCCRSP+CW EVGEQRLMGP+L+QSTNE IQ IRSRMQT  SRQKSYADV
Sbjct: 1189 GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELIQSTNEAIQKIRSRMQTTQSRQKSYADV 1248

Query: 121  GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
             R DLEF VGDKVFLKVAPMKGVLRFE RGKLSPRFVGPFEILER+GPVAYRLALPPSLS
Sbjct: 1249 RRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS 1308

Query: 181  TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
            TVHDVF VSMLRKYV +PSH+VDYEPLEIDENLSY+EQ VEVLAR
Sbjct: 1309 TVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAR 1353

[Close]

BLAST of Cmc05g0140281 vs. NCBI nr
Match: KAA0050751.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 407.1 bits (1045), Expect = 9.6e-110
Identity = 200/225 (88.89%), Postives = 208/225 (92.44%), Query Frame = 0


Query: 1   MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDFS AFH QTDGQTERLNQ+LEDML+ACALEF GSWDSHLHLMEFAYNNS+QATI
Sbjct: 1   MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 60

Query: 61  GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
           GMA FEALYGKCCRSP+CW EVGEQRLMGP+LVQSTNE IQ IRSRM TA SRQKSYADV
Sbjct: 61  GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV 120

Query: 121 GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
            R DLEF VGDKVFLKVAPMKGVLRFE RGKLSPRFVGPFEILER+GPVAYRLALPPSLS
Sbjct: 121 RRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS 180

Query: 181 TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
           TVHDVF VSMLRKYV +PSH+VDYEPLEIDENLSY EQ VEVLAR
Sbjct: 181 TVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAR 225

[Close]

BLAST of Cmc05g0140281 vs. NCBI nr
Match: KAA0040871.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 199/225 (88.44%), Postives = 209/225 (92.89%), Query Frame = 0


Query: 1    MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
            MGTRLDFS AFHLQTDGQTERLNQ+LEDML+ACALEF GSWDSHLHLMEFAYNNS+QATI
Sbjct: 1407 MGTRLDFSTAFHLQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 1466

Query: 61   GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
            GMA FEALYGKCCRSP+CW EVGEQRLMGP+LV STNE IQ IRSRM TA SRQKSYADV
Sbjct: 1467 GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVLSTNEAIQKIRSRMHTAQSRQKSYADV 1526

Query: 121  GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
             R DLEF VGDKVFLKVAPM+GVLRFE RGKLSPRFVGPFEILER+GPVAYRLALPPSLS
Sbjct: 1527 RRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS 1586

Query: 181  TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
            TVHDVF VSMLRKYV +PSH+VDYEPLEIDENLSY+EQ VEVLAR
Sbjct: 1587 TVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAR 1631

[Close]

BLAST of Cmc05g0140281 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 406.0 bits (1042), Expect = 2.1e-109
Identity = 199/225 (88.44%), Postives = 208/225 (92.44%), Query Frame = 0


Query: 1   MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDFS AFH QTDGQTERLNQ+LEDML+ACALEF GSWDSHLHLMEFAYNNS+QATI
Sbjct: 656 MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 715

Query: 61  GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
           GMA FEALYG+CCRSP+CW EVGEQRLMGP+LVQSTNE IQ IRSRM TA SRQKSYADV
Sbjct: 716 GMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV 775

Query: 121 GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
            R DLEF VGDKVFLKVAPMKGVLRFE RGKLSPRFVGPFEILER+GPVAYRLALPPSLS
Sbjct: 776 RRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS 835

Query: 181 TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
           TVHDVF VSMLRKYV +PSH+VDYEPLEIDENLSY EQ VEVLAR
Sbjct: 836 TVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAR 880

[Close]

BLAST of Cmc05g0140281 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.9e-18
Identity = 62/196 (31.63%), Postives = 97/196 (49.49%), Query Frame = 0


Query: 5    LDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATIGMAL 64
            + FS+ +  QTDGQTER NQ +E +L+        +W  H+ L++ +YNN+  +   M  
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYG-KCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADVGRN 124
            FE ++      SP+      ++     +  Q T +  Q ++  + T + + K Y D+   
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKT---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 125  DL-EFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLSTV 184
            ++ EF  GD V +K     G L      KL+P F GPF +L++ GP  Y L LP S+  +
Sbjct: 1191 EIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHM 1250

Query: 185  -HDVFRVSMLRKYVSN 198
                F VS L KY  N
Sbjct: 1251 FSSTFHVSHLEKYRHN 1260

[Close]

BLAST of Cmc05g0140281 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.9e-18
Identity = 62/196 (31.63%), Postives = 97/196 (49.49%), Query Frame = 0


Query: 5    LDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATIGMAL 64
            + FS+ +  QTDGQTER NQ +E +L+        +W  H+ L++ +YNN+  +   M  
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYG-KCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADVGRN 124
            FE ++      SP+      ++     +  Q T +  Q ++  + T + + K Y D+   
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKT---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 125  DL-EFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLSTV 184
            ++ EF  GD V +K     G L      KL+P F GPF +L++ GP  Y L LP S+  +
Sbjct: 1191 EIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHM 1250

Query: 185  -HDVFRVSMLRKYVSN 198
                F VS L KY  N
Sbjct: 1251 FSSTFHVSHLEKYRHN 1260

[Close]

BLAST of Cmc05g0140281 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.9e-18
Identity = 62/196 (31.63%), Postives = 97/196 (49.49%), Query Frame = 0


Query: 5    LDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATIGMAL 64
            + FS+ +  QTDGQTER NQ +E +L+        +W  H+ L++ +YNN+  +   M  
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYG-KCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADVGRN 124
            FE ++      SP+      ++     +  Q T +  Q ++  + T + + K Y D+   
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKT---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 125  DL-EFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLSTV 184
            ++ EF  GD V +K     G L      KL+P F GPF +L++ GP  Y L LP S+  +
Sbjct: 1191 EIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHM 1250

Query: 185  -HDVFRVSMLRKYVSN 198
                F VS L KY  N
Sbjct: 1251 FSSTFHVSHLEKYRHN 1260

[Close]

BLAST of Cmc05g0140281 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.9e-18
Identity = 62/196 (31.63%), Postives = 97/196 (49.49%), Query Frame = 0


Query: 5    LDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATIGMAL 64
            + FS+ +  QTDGQTER NQ +E +L+        +W  H+ L++ +YNN+  +   M  
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYG-KCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADVGRN 124
            FE ++      SP+      ++     +  Q T +  Q ++  + T + + K Y D+   
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKT---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 125  DL-EFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLSTV 184
            ++ EF  GD V +K     G L      KL+P F GPF +L++ GP  Y L LP S+  +
Sbjct: 1191 EIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHM 1250

Query: 185  -HDVFRVSMLRKYVSN 198
                F VS L KY  N
Sbjct: 1251 FSSTFHVSHLEKYRHN 1260

[Close]

BLAST of Cmc05g0140281 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.9e-18
Identity = 62/196 (31.63%), Postives = 97/196 (49.49%), Query Frame = 0


Query: 5    LDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATIGMAL 64
            + FS+ +  QTDGQTER NQ +E +L+        +W  H+ L++ +YNN+  +   M  
Sbjct: 1071 MKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTP 1130

Query: 65   FEALYG-KCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADVGRN 124
            FE ++      SP+      ++     +  Q T +  Q ++  + T + + K Y D+   
Sbjct: 1131 FEIVHRYSPALSPLELPSFSDKT---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1190

Query: 125  DL-EFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLSTV 184
            ++ EF  GD V +K     G L      KL+P F GPF +L++ GP  Y L LP S+  +
Sbjct: 1191 EIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHM 1250

Query: 185  -HDVFRVSMLRKYVSN 198
                F VS L KY  N
Sbjct: 1251 FSSTFHVSHLEKYRHN 1260

[Close]

BLAST of Cmc05g0140281 vs. ExPASy TrEMBL
Match: A0A5D3B9A7 (Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00860 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.0e-121
Identity = 219/225 (97.33%), Postives = 221/225 (98.22%), Query Frame = 0


Query: 1    MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
            MGTRLDFSIAFHLQTDGQTERLNQ+LEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI
Sbjct: 932  MGTRLDFSIAFHLQTDGQTERLNQVLEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 991

Query: 61   GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
            GMA FEALYGKCCRSPI WDEVGEQRLMGP+LVQSTNEGIQ IRSRMQTAHSRQKSYADV
Sbjct: 992  GMASFEALYGKCCRSPIYWDEVGEQRLMGPELVQSTNEGIQKIRSRMQTAHSRQKSYADV 1051

Query: 121  GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
            GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPP LS
Sbjct: 1052 GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPLLS 1111

Query: 181  TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
            TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR
Sbjct: 1112 TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 1156

[Close]

BLAST of Cmc05g0140281 vs. ExPASy TrEMBL
Match: A0A5A7TK90 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold795G00780 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.2e-110
Identity = 199/225 (88.44%), Postives = 209/225 (92.89%), Query Frame = 0


Query: 1    MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
            MGTRLDFS AFHLQTDGQTERLNQ+LEDML+ACALEF  SWDSHLHLMEFAYNNS+QATI
Sbjct: 1129 MGTRLDFSTAFHLQTDGQTERLNQVLEDMLRACALEFPSSWDSHLHLMEFAYNNSYQATI 1188

Query: 61   GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
            GMA FEALYGKCCRSP+CW EVGEQRLMGP+L+QSTNE IQ IRSRMQT  SRQKSYADV
Sbjct: 1189 GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELIQSTNEAIQKIRSRMQTTQSRQKSYADV 1248

Query: 121  GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
             R DLEF VGDKVFLKVAPMKGVLRFE RGKLSPRFVGPFEILER+GPVAYRLALPPSLS
Sbjct: 1249 RRKDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS 1308

Query: 181  TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
            TVHDVF VSMLRKYV +PSH+VDYEPLEIDENLSY+EQ VEVLAR
Sbjct: 1309 TVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAR 1353

[Close]

BLAST of Cmc05g0140281 vs. ExPASy TrEMBL
Match: A0A5A7UB07 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4565G00010 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.6e-110
Identity = 200/225 (88.89%), Postives = 208/225 (92.44%), Query Frame = 0


Query: 1   MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDFS AFH QTDGQTERLNQ+LEDML+ACALEF GSWDSHLHLMEFAYNNS+QATI
Sbjct: 1   MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 60

Query: 61  GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
           GMA FEALYGKCCRSP+CW EVGEQRLMGP+LVQSTNE IQ IRSRM TA SRQKSYADV
Sbjct: 61  GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV 120

Query: 121 GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
            R DLEF VGDKVFLKVAPMKGVLRFE RGKLSPRFVGPFEILER+GPVAYRLALPPSLS
Sbjct: 121 RRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS 180

Query: 181 TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
           TVHDVF VSMLRKYV +PSH+VDYEPLEIDENLSY EQ VEVLAR
Sbjct: 181 TVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAR 225

[Close]

BLAST of Cmc05g0140281 vs. ExPASy TrEMBL
Match: A0A5A7TGS7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00240 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.1e-110
Identity = 199/225 (88.44%), Postives = 209/225 (92.89%), Query Frame = 0


Query: 1    MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
            MGTRLDFS AFHLQTDGQTERLNQ+LEDML+ACALEF GSWDSHLHLMEFAYNNS+QATI
Sbjct: 1407 MGTRLDFSTAFHLQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 1466

Query: 61   GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
            GMA FEALYGKCCRSP+CW EVGEQRLMGP+LV STNE IQ IRSRM TA SRQKSYADV
Sbjct: 1467 GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVLSTNEAIQKIRSRMHTAQSRQKSYADV 1526

Query: 121  GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
             R DLEF VGDKVFLKVAPM+GVLRFE RGKLSPRFVGPFEILER+GPVAYRLALPPSLS
Sbjct: 1527 RRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS 1586

Query: 181  TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
            TVHDVF VSMLRKYV +PSH+VDYEPLEIDENLSY+EQ VEVLAR
Sbjct: 1587 TVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAR 1631

[Close]

BLAST of Cmc05g0140281 vs. ExPASy TrEMBL
Match: A0A5A7UZZ4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.0e-109
Identity = 196/225 (87.11%), Postives = 209/225 (92.89%), Query Frame = 0


Query: 1   MGTRLDFSIAFHLQTDGQTERLNQILEDMLQACALEFSGSWDSHLHLMEFAYNNSFQATI 60
           MGTRLDFS AFH QTDGQTERLNQ+LEDML+ACALEF GSWDSHLHLMEFAYNNS+QATI
Sbjct: 285 MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATI 344

Query: 61  GMALFEALYGKCCRSPICWDEVGEQRLMGPKLVQSTNEGIQNIRSRMQTAHSRQKSYADV 120
           GMA FEALYGKCCRSP+CWDEVGEQRLMGP+LVQSTNE IQ IRSRM TA SRQKSYADV
Sbjct: 345 GMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV 404

Query: 121 GRNDLEFGVGDKVFLKVAPMKGVLRFEGRGKLSPRFVGPFEILERLGPVAYRLALPPSLS 180
            R DLEF VGDKVFLKVAPM+GVLRFE RGKLSPRFVGPFEILER+GPVAYRLALPPSL+
Sbjct: 405 RRKDLEFEVGDKVFLKVAPMRGVLRFEKRGKLSPRFVGPFEILERIGPVAYRLALPPSLT 464

Query: 181 TVHDVFRVSMLRKYVSNPSHMVDYEPLEIDENLSYSEQQVEVLAR 226
           T HDVF VSMLRKYV +PSH+VDYEPLEIDEN+SY+EQ VE+LAR
Sbjct: 465 TAHDVFHVSMLRKYVPDPSHVVDYEPLEIDENMSYTEQPVEILAR 509

The following BLAST results are available for this feature:

BLAST of Cmc05g0140281 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96450.1	4.2e-121	97.33	retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa...	[more]
KAA0042366.1	2.5e-110	88.44	pol protein [Cucumis melo var. makuwa]	[more]
KAA0050751.1	9.6e-110	88.89	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040871.1	1.3e-109	88.44	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	2.1e-109	88.44	pol protein [Cucumis melo subsp. melo]	[more]

BLAST of Cmc05g0140281 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	6.9e-18	31.63	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	6.9e-18	31.63	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	6.9e-18	31.63	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	6.9e-18	31.63	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	6.9e-18	31.63	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc05g0140281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B9A7	2.0e-121	97.33	Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. maku...	[more]
A0A5A7TK90	1.2e-110	88.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79...	[more]
A0A5A7UB07	4.6e-110	88.89	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4565G00010 P...	[more]
A0A5A7TGS7	6.1e-110	88.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7UZZ4	1.0e-109	87.11	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE...	[more]

BLAST of Cmc05g0140281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..113 e-value: 2.1E-16 score: 61.8
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 26..224
None	No IPR available	PANTHER	PTHR46148:SF18	IPP TRANSFERASE	coord: 26..224
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0140281.1	Cmc05g0140281.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding