Cmc05g0140271 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0140271
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr05: 24712052 .. 24713366 (-)
RNA-Seq Expression	Cmc05g0140271
Synteny	Cmc05g0140271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAGCTCGGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATACAGAACAAGTCTAATTCTTTTGAAAAGTTCAAAGAATATAAAGCTGAAGTTGAAAATGAATCAGGTAAAACTATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGGCTTACAATTCCAAGACTATTTGATAGAACATGAAATCCAATCACAACTCTCTACACCTAATACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAATCGAACTTTGTTGGACATGGTTCGCTTTATGATGAGTTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAACAGCTATCTATATTTTAAACAACGTTCCCTCTAAAAGGTAGTTTACGTCACTTTAGAATTTAGGGATGTCCAACACACGTATTGGTGCAAAACCCTAAAAAGTTGGAACGTCGTTCAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCTAAAGGTGGTTTATTTTATGACACTCAAGAAAATAAAGTATTTATATCGACAAATGCTACGTTTTTAGAGGAAGACCACATAAGAAATCATCAAACTCGTAGTAAACTAGTATTAGAAGAAATTTTCAAGAATACTACAGATAAACCTAGTTCATCTACTAAAGTAGTTAATAAAACTAGGAATATTGGTCAAAAACATTTTTCTCAAGAGTTGAGAGAACCTCGACGTAGTGGAAGGGTTGTACAACAACCTGATCGCTATTTGGGTTTAAGTGAAGCTCAAATCGTCATATCTGATAATGGAATAGAGGATCAATTGACCTATAAACAGACAATGAATGATATGGAATGTGACCAATGGGTCAAAGCCATAGACCTCAAAATGGAATCTATGTATTTCAATTCTGTCTGGACTCTAGTAGATCAACCAAATAATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAATGGCAAAAGGTTATACACAAAAAGAGGGAGTGGATTATGAAGAAACTTTCTCTTCTGTTGCCATGCTGAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTCGCAGATGGATGTCAAGACAGCCTTTTTGAACGGAAATCTTGAGGTGAGTATCTATATGGTCCAACTAAAGGGGTTTATACAAAAGGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTGA

mRNA sequence

ATGTCAAAGCTCGGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATACAGAACAAGTCTAATTCTTTTGAAAAGTTCAAAGAATATAAAGCTGAAGTTGAAAATGAATCAGGTAAAACTATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGGCTTACAATTCCAAGACTATTTGATAGAACATGAAATCCAATCACAACTCTCTACACCTAATACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAATCGAACTTTGTTGGACATGGGATGTCCAACACACGTATTGGTGCAAAACCCTAAAAAGTTGGAACGTCGTTCAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCTAAAGGTGGTTTATTTTATGACACTCAAGAAAATAAAGTATTTATATCGACAAATGCTACGTTTTTAGAGGAAGACCACATAAGAAATCATCAAACTCGTAGTAAACTAGTATTAGAAGAAATTTTCAAGAATACTACAGATAAACCTAGTTCATCTACTAAAGTAGTTAATAAAACTAGGAATATTGGTCAAAAACATTTTTCTCAAGAGTTGAGAGAACCTCGACGTAGTGGAAGGGTTGTACAACAACCTGATCGCTATTTGGGTTTAAGTGAAGCTCAAATCGTCATATCTGATAATGGAATAGAGGATCAATTGACCTATAAACAGACAATGAATGATATGGAATGTGACCAATGGGTCAAAGCCATAGACCTCAAAATGGAATCTATGTATTTCAATTCTGTCTGGACTCTAGTAGATCAACCAAATAATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAATGGCAAAAGGTTATACACAAAAAGAGGGAGTGGATTATGAAGAAACTTTCTCTTCTGTTGCCATGCTGAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTCGCAGATGGATGTCAAGACAGCCTTTTTGAACGGAAATCTTGAGGTGAGTATCTATATGGTCCAACTAAAGGGGTTTATACAAAAGGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTGA

Coding sequence (CDS)

ATGTCAAAGCTCGGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATACAGAACAAGTCTAATTCTTTTGAAAAGTTCAAAGAATATAAAGCTGAAGTTGAAAATGAATCAGGTAAAACTATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGGCTTACAATTCCAAGACTATTTGATAGAACATGAAATCCAATCACAACTCTCTACACCTAATACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAATCGAACTTTGTTGGACATGGGATGTCCAACACACGTATTGGTGCAAAACCCTAAAAAGTTGGAACGTCGTTCAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCTAAAGGTGGTTTATTTTATGACACTCAAGAAAATAAAGTATTTATATCGACAAATGCTACGTTTTTAGAGGAAGACCACATAAGAAATCATCAAACTCGTAGTAAACTAGTATTAGAAGAAATTTTCAAGAATACTACAGATAAACCTAGTTCATCTACTAAAGTAGTTAATAAAACTAGGAATATTGGTCAAAAACATTTTTCTCAAGAGTTGAGAGAACCTCGACGTAGTGGAAGGGTTGTACAACAACCTGATCGCTATTTGGGTTTAAGTGAAGCTCAAATCGTCATATCTGATAATGGAATAGAGGATCAATTGACCTATAAACAGACAATGAATGATATGGAATGTGACCAATGGGTCAAAGCCATAGACCTCAAAATGGAATCTATGTATTTCAATTCTGTCTGGACTCTAGTAGATCAACCAAATAATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAATGGCAAAAGGTTATACACAAAAAGAGGGAGTGGATTATGAAGAAACTTTCTCTTCTGTTGCCATGCTGAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTCGCAGATGGATGTCAAGACAGCCTTTTTGAACGGAAATCTTGAGGTGAGTATCTATATGGTCCAACTAAAGGGGTTTATACAAAAGGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTGA

Protein sequence

MSKLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEYMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDMGCPTHVLVQNPKKLERRSKLCLFVGYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTTDKPSSSTKVVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQTMNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKARLMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIYMVQLKGFIQKGQEQKVCKLQKSIYGLKQASRS

Homology

[Close]

BLAST of Cmc05g0140271 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 627.1 bits (1616), Expect = 1.0e-175
Identity = 328/449 (73.05%), Postives = 355/449 (79.06%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  GGYEYFISFIDD+SRYGHVYL+ +KS SFEKFKEYKAEVENE GKTIKTLRSDRGGE
Sbjct: 515 KARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGE 574

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM  +FQDYLIE  IQSQLS P+TPQQNGVSERRNRTLLDM                   
Sbjct: 575 YMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYAL 634

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLVQNPKKLE RSKLCLFV
Sbjct: 635 ETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFV 694

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTTDKPSSSTK 242
           GYPKES+GGLFY  QENKVF+STNATFLEEDH RNHQ RSK+VL+E+FKN TDKPSSSTK
Sbjct: 695 GYPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSSTK 754

Query: 243 VVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQTMND 302
           VV+K     Q H SQELR PRRSGRVV QP+RYLGL E QI+I D+G+ED LTYKQ MND
Sbjct: 755 VVDKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMND 814

Query: 303 MECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKARLMA 362
           ++ DQW+KA++L+MESMYFNSVWTLVD P++VKPIGCKWIYKRKRDQAGKVQTFKARL+A
Sbjct: 815 VDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVA 874

Query: 363 KGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIYMVQ 397
           KGYTQKEGVDYEETFS VAMLKSIRILLSIATFY+YEI QMDVKTAFLNGNLE SIYMVQ
Sbjct: 875 KGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQ 934

[Close]

BLAST of Cmc05g0140271 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 570.1 bits (1468), Expect = 1.5e-158
Identity = 301/452 (66.59%), Postives = 340/452 (75.22%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  GG+EYFISFIDDYSRYG++YL+++KS + EKFKEYK EVEN   K IK LRSDRGGE
Sbjct: 421 KARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGE 480

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM L+FQDY+IEH IQSQLS P TPQQNGVSERRNRTLLDM                   
Sbjct: 481 YMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAV 540

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLV NPKKLE RS+LC FV
Sbjct: 541 ETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFV 600

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTT---DKPSS 242
           GYPKE++GGLF+D QEN+VF+STNATFLEEDH+RNH+ RSKLVL E    +T   D+   
Sbjct: 601 GYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGP 660

Query: 243 STKVVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQT 302
           S++ V++T   GQ H SQ LR PRRSGRVV QP+RYLGL+E Q+VI D+G+ED L+YKQ 
Sbjct: 661 SSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQA 720

Query: 303 MNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKAR 362
           MND++ DQWVKA+DL+MESMYFNSVW LVD P  VKPIGCKWIYKRKRD AGKVQTFKAR
Sbjct: 721 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 780

Query: 363 LMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIY 397
           L+AKGYTQ+EGVDYEETFS VAMLKSIRILLSIATFYDYEI QMDVKTAFLNGNLE SI+
Sbjct: 781 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 840

[Close]

BLAST of Cmc05g0140271 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 570.1 bits (1468), Expect = 1.5e-158
Identity = 301/452 (66.59%), Postives = 340/452 (75.22%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  GG+EYFISFIDDYSRYG++YL+++KS + EKFKEYK EVEN   K IK LRSDRGGE
Sbjct: 295 KARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGE 354

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM L+FQDY+IEH IQSQLS P TPQQNGVSERRNRTLLDM                   
Sbjct: 355 YMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAV 414

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLV NPKKLE RS+LC FV
Sbjct: 415 ETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFV 474

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTT---DKPSS 242
           GYPKE++GGLF+D QEN+VF+STNATFLEEDH+RNH+ RSKLVL E    +T   D+   
Sbjct: 475 GYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGP 534

Query: 243 STKVVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQT 302
           S++ V++T   GQ H SQ LR PRRSGRVV QP+RYLGL+E Q+VI D+G+ED L+YKQ 
Sbjct: 535 SSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQA 594

Query: 303 MNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKAR 362
           MND++ DQWVKA+DL+MESMYFNSVW LVD P  VKPIGCKWIYKRKRD AGKVQTFKAR
Sbjct: 595 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 654

Query: 363 LMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIY 397
           L+AKGYTQ+EGVDYEETFS VAMLKSIRILLSIATFYDYEI QMDVKTAFLNGNLE SI+
Sbjct: 655 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 714

[Close]

BLAST of Cmc05g0140271 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 569.3 bits (1466), Expect = 2.6e-158
Identity = 301/452 (66.59%), Postives = 340/452 (75.22%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  G +EYFISFIDDYSRYG++YL+++KS + EKFKEYKAEVEN   K IK LRSDRGGE
Sbjct: 31  KARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGE 90

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM L+FQDY+IEH IQSQLS P TPQQNGVSERRNRTLLDM                   
Sbjct: 91  YMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYAQLPSSFWGYAV 150

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLV NPKKLE RS+LC FV
Sbjct: 151 ETAVHILNNVPSKSVSKIPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFV 210

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTT---DKPSS 242
           GYPKE++GGLF+D QEN+VF+STNATFLEEDH+RNH+ RSKLVL E    +T   D+   
Sbjct: 211 GYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGP 270

Query: 243 STKVVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQT 302
           S++ V++T   GQ H SQ LR PRRSGRVV QP+RYLGL+E Q+VI D+G+ED L+YKQ 
Sbjct: 271 SSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQA 330

Query: 303 MNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKAR 362
           MND++ DQWVKA+DL+MESMYFNSVW LVD P  VKPIGCKWIYKRKRD AGKVQTFKAR
Sbjct: 331 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 390

Query: 363 LMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIY 397
           L+AKGYTQ+EGVDYEETFS VAMLKSIRILLSIATFYDYEI QMDVKTAFLNGNLE SI+
Sbjct: 391 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 450

[Close]

BLAST of Cmc05g0140271 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 565.5 bits (1456), Expect = 3.7e-157
Identity = 300/452 (66.37%), Postives = 338/452 (74.78%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  GG+EYFISFIDDYSRYG++YL+++KS + EKFKEYK EVEN   K IK LRSDRGGE
Sbjct: 295 KARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGE 354

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM L+FQDY+IEH IQSQLS P TPQQNGVSERRNRTLLDM                   
Sbjct: 355 YMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAV 414

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLV NPKKLE RS+LC FV
Sbjct: 415 ETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFV 474

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTT---DKPSS 242
           GYPKE++GGLF+D QEN+VF+STNATFLEEDH+RNH+ RSKLVL E    +T   D+   
Sbjct: 475 GYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGP 534

Query: 243 STKVVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQT 302
           S++ V++T   GQ H SQ LR PRRSGRVV QP+RYLGL+E Q+VI D+G+ED L+YKQ 
Sbjct: 535 SSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQA 594

Query: 303 MNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKAR 362
           MND++ DQWVKA+DL+MESMYFNSVW LVD P  VKPIGCKWIYKRKRD AGKVQTFKAR
Sbjct: 595 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 654

Query: 363 LMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIY 397
           L+AKGYTQ+EGVDYEETFS VAMLKSIRILLSIATFYDYEI QMDVKTAFLNGNLE SI+
Sbjct: 655 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 714

[Close]

BLAST of Cmc05g0140271 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-61
Identity = 161/476 (33.82%), Postives = 243/476 (51.05%), Query Frame = 0


Query: 6   GGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEYMG 65
           GG +YF++FIDD SR   VY+++ K   F+ F+++ A VE E+G+ +K LRSD GGEY  
Sbjct: 498 GGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTS 557

Query: 66  LQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLD----------------------- 125
            +F++Y   H I+ + + P TPQ NGV+ER NRT+++                       
Sbjct: 558 REFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTA 617

Query: 126 ---------------------------------MGCP--THVLVQNPKKLERRSKLCLFV 185
                                             GC    HV  +   KL+ +S  C+F+
Sbjct: 618 CYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFI 677

Query: 186 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKN------TTDK 245
           GY  E  G   +D  + KV  S +  F  E  +R     S+ V   I  N      T++ 
Sbjct: 678 GYGDEEFGYRLWDPVKKKVIRSRDVVF-RESEVRTAADMSEKVKNGIIPNFVTIPSTSNN 737

Query: 246 PSSSTKVVNKTRNIGQ-------------------KHFSQ--ELREP-RRSGRVVQQPDR 305
           P+S+    ++    G+                   +H +Q  E  +P RRS R   +  R
Sbjct: 738 PTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRR 797

Query: 306 YLGLSEAQIVISDNGIEDQLTYKQTMNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNV 365
           Y   S   ++ISD+   + L  K+ ++  E +Q +KA+  +MES+  N  + LV+ P   
Sbjct: 798 Y--PSTEYVLISDDREPESL--KEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGK 857

Query: 366 KPIGCKWIYKRKRDQAGKVQTFKARLMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIAT 396
           +P+ CKW++K K+D   K+  +KARL+ KG+ QK+G+D++E FS V  + SIR +LS+A 
Sbjct: 858 RPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAA 917

[Close]

BLAST of Cmc05g0140271 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 147.5 bits (371), Expect = 3.2e-34
Identity = 134/549 (24.41%), Postives = 217/549 (39.53%), Query Frame = 0


Query: 10   YFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEYMGLQFQ 69
            YF+ F+D ++ Y   YLI+ KS+ F  F+++ A+ E      +  L  D G EY+  + +
Sbjct: 502  YFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMR 561

Query: 70   DYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDMG------------------------- 129
             + ++  I   L+ P+TPQ NGVSER  RT+ +                           
Sbjct: 562  QFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLI 621

Query: 130  --CPTHVLVQNPK--------------------------------KLERRSKLCLFVGYP 189
               P+  LV + K                                K + +S   +FVGY 
Sbjct: 622  NRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGY- 681

Query: 190  KESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTTDK--PSSSTKV 249
             E  G   +D    K  ++ +    E + + +   + + V  +  K + +K  P+ S K+
Sbjct: 682  -EPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKI 741

Query: 250  V-----------------------------NKTRNIGQKHFSQE---------------- 309
            +                             N +R I Q  F  E                
Sbjct: 742  IQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKES 801

Query: 310  ----------------LREPRRSGRVVQQPDRYLGLSEAQIVI----SDNGIE------- 369
                            L E + SG   +  +        +I I     ++GIE       
Sbjct: 802  NKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSE 861

Query: 370  -----DQLTYKQTMNDM-------------------------ECDQWVKAIDLKMESMYF 396
                  Q++Y +  N +                         +   W +AI+ ++ +   
Sbjct: 862  RLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKI 921

[Close]

BLAST of Cmc05g0140271 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.1e-34
Identity = 140/574 (24.39%), Postives = 222/574 (38.68%), Query Frame = 0


Query: 8    YEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEYMGLQ 67
            Y Y++ F+D ++RY  +Y ++ KS   E F  +K  +EN     I T  SD GGE++ L 
Sbjct: 542  YRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL- 601

Query: 68   FQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDMG----------------------- 127
              +Y  +H I    S P+TP+ NG+SER++R +++ G                       
Sbjct: 602  -WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVY 661

Query: 128  ----CPTHVL-------------------------------VQNPKKLERRSKLCLFVGY 187
                 PT +L                                 N  KL+ +S+ C+F+GY
Sbjct: 662  LINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGY 721

Query: 188  PKESKGGLFYDTQENKVFISTNATFLE--------------------------------- 247
                   L    Q ++++IS +  F E                                 
Sbjct: 722  SLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLP 781

Query: 248  ------------EDH------------IRNHQTRSKLVLEEIFKNT-------------- 307
                        + H             RN Q  S   L+  F ++              
Sbjct: 782  TRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSS-NLDSSFSSSFPSSPEPTAPRQNG 841

Query: 308  ---TDKPSSSTKVVNKTRNIGQKH--------FSQELREPRRSGRVVQQPDRYLGLSE-- 367
               T +P+ +    + ++N  Q +         +Q L  P +S      P      S   
Sbjct: 842  PQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTS 901

Query: 368  --------------AQIVISDN----------------------------GIEDQLTYKQ 397
                          AQIV ++N                             +  +   + 
Sbjct: 902  PTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRT 961

[Close]

BLAST of Cmc05g0140271 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.5e-33
Identity = 147/577 (25.48%), Postives = 223/577 (38.65%), Query Frame = 0


Query: 8    YEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEYMGLQ 67
            Y Y++ F+D ++RY  +Y ++ KS   + F  +K+ VEN     I TL SD GGE++ L 
Sbjct: 521  YRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVL- 580

Query: 68   FQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDMG----------------------- 127
             +DYL +H I    S P+TP+ NG+SER++R +++MG                       
Sbjct: 581  -RDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVY 640

Query: 128  ----CPTHVL-VQNP------------------------------KKLERRSKLCLFVGY 187
                 PT +L +Q+P                               KLE +SK C F+GY
Sbjct: 641  LINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGY 700

Query: 188  PKESKGGLFYDTQENKVFISTNATFLE-------------------EDHIRN---HQT-- 247
                   L       +++ S +  F E                    D   N   H T  
Sbjct: 701  SLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLP 760

Query: 248  RSKLVL------------------------------EEIFKNTTDKPSSSTKVV---NKT 307
             + LVL                                +  ++   PSSS       N  
Sbjct: 761  TTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGP 820

Query: 308  RNIGQKHFSQE-------LREPRRSGRVVQQPDRYLGLSEAQI----------------- 367
            +   Q H +Q        L  P  +      P++   L ++ I                 
Sbjct: 821  QPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNS 880

Query: 368  -------------------VISDNGIEDQLTY---------------------------- 397
                               +I  N      T+                            
Sbjct: 881  PSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSE 940

[Close]

BLAST of Cmc05g0140271 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-12
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 253 WVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKARLMAKGYTQ 312
           W +A+  +++++  N  W LV  P N   +GCKW++K K    G +   KARL+AKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 313 KEGVDYEETFSSVAMLKSIRILLSIA 339
           +EG+ + ET+S V    +IR +L++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc05g0140271 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 627.1 bits (1616), Expect = 5.0e-176
Identity = 328/449 (73.05%), Postives = 355/449 (79.06%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  GGYEYFISFIDD+SRYGHVYL+ +KS SFEKFKEYKAEVENE GKTIKTLRSDRGGE
Sbjct: 515 KARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGE 574

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM  +FQDYLIE  IQSQLS P+TPQQNGVSERRNRTLLDM                   
Sbjct: 575 YMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYAL 634

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLVQNPKKLE RSKLCLFV
Sbjct: 635 ETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFV 694

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTTDKPSSSTK 242
           GYPKES+GGLFY  QENKVF+STNATFLEEDH RNHQ RSK+VL+E+FKN TDKPSSSTK
Sbjct: 695 GYPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSSTK 754

Query: 243 VVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQTMND 302
           VV+K     Q H SQELR PRRSGRVV QP+RYLGL E QI+I D+G+ED LTYKQ MND
Sbjct: 755 VVDKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMND 814

Query: 303 MECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKARLMA 362
           ++ DQW+KA++L+MESMYFNSVWTLVD P++VKPIGCKWIYKRKRDQAGKVQTFKARL+A
Sbjct: 815 VDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVA 874

Query: 363 KGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIYMVQ 397
           KGYTQKEGVDYEETFS VAMLKSIRILLSIATFY+YEI QMDVKTAFLNGNLE SIYMVQ
Sbjct: 875 KGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQ 934

[Close]

BLAST of Cmc05g0140271 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 7.3e-159
Identity = 301/452 (66.59%), Postives = 340/452 (75.22%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  GG+EYFISFIDDYSRYG++YL+++KS + EKFKEYK EVEN   K IK LRSDRGGE
Sbjct: 421 KARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGE 480

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM L+FQDY+IEH IQSQLS P TPQQNGVSERRNRTLLDM                   
Sbjct: 481 YMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAV 540

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLV NPKKLE RS+LC FV
Sbjct: 541 ETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFV 600

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTT---DKPSS 242
           GYPKE++GGLF+D QEN+VF+STNATFLEEDH+RNH+ RSKLVL E    +T   D+   
Sbjct: 601 GYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGP 660

Query: 243 STKVVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQT 302
           S++ V++T   GQ H SQ LR PRRSGRVV QP+RYLGL+E Q+VI D+G+ED L+YKQ 
Sbjct: 661 SSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQA 720

Query: 303 MNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKAR 362
           MND++ DQWVKA+DL+MESMYFNSVW LVD P  VKPIGCKWIYKRKRD AGKVQTFKAR
Sbjct: 721 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 780

Query: 363 LMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIY 397
           L+AKGYTQ+EGVDYEETFS VAMLKSIRILLSIATFYDYEI QMDVKTAFLNGNLE SI+
Sbjct: 781 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 840

[Close]

BLAST of Cmc05g0140271 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 7.3e-159
Identity = 301/452 (66.59%), Postives = 340/452 (75.22%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  GG+EYFISFIDDYSRYG++YL+++KS + EKFKEYK EVEN   K IK LRSDRGGE
Sbjct: 295 KARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGE 354

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM L+FQDY+IEH IQSQLS P TPQQNGVSERRNRTLLDM                   
Sbjct: 355 YMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAV 414

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLV NPKKLE RS+LC FV
Sbjct: 415 ETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFV 474

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTT---DKPSS 242
           GYPKE++GGLF+D QEN+VF+STNATFLEEDH+RNH+ RSKLVL E    +T   D+   
Sbjct: 475 GYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGP 534

Query: 243 STKVVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQT 302
           S++ V++T   GQ H SQ LR PRRSGRVV QP+RYLGL+E Q+VI D+G+ED L+YKQ 
Sbjct: 535 SSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQA 594

Query: 303 MNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKAR 362
           MND++ DQWVKA+DL+MESMYFNSVW LVD P  VKPIGCKWIYKRKRD AGKVQTFKAR
Sbjct: 595 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 654

Query: 363 LMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIY 397
           L+AKGYTQ+EGVDYEETFS VAMLKSIRILLSIATFYDYEI QMDVKTAFLNGNLE SI+
Sbjct: 655 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 714

[Close]

BLAST of Cmc05g0140271 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 569.3 bits (1466), Expect = 1.2e-158
Identity = 301/452 (66.59%), Postives = 340/452 (75.22%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  G +EYFISFIDDYSRYG++YL+++KS + EKFKEYKAEVEN   K IK LRSDRGGE
Sbjct: 31  KARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGE 90

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM L+FQDY+IEH IQSQLS P TPQQNGVSERRNRTLLDM                   
Sbjct: 91  YMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYAQLPSSFWGYAV 150

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLV NPKKLE RS+LC FV
Sbjct: 151 ETAVHILNNVPSKSVSKIPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFV 210

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTT---DKPSS 242
           GYPKE++GGLF+D QEN+VF+STNATFLEEDH+RNH+ RSKLVL E    +T   D+   
Sbjct: 211 GYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGP 270

Query: 243 STKVVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQT 302
           S++ V++T   GQ H SQ LR PRRSGRVV QP+RYLGL+E Q+VI D+G+ED L+YKQ 
Sbjct: 271 SSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQA 330

Query: 303 MNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKAR 362
           MND++ DQWVKA+DL+MESMYFNSVW LVD P  VKPIGCKWIYKRKRD AGKVQTFKAR
Sbjct: 331 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 390

Query: 363 LMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIY 397
           L+AKGYTQ+EGVDYEETFS VAMLKSIRILLSIATFYDYEI QMDVKTAFLNGNLE SI+
Sbjct: 391 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 450

[Close]

BLAST of Cmc05g0140271 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.8e-157
Identity = 300/452 (66.37%), Postives = 338/452 (74.78%), Query Frame = 0


Query: 3   KLGGGYEYFISFIDDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGE 62
           K  GG+EYFISFIDDYSRYG++YL+++KS + EKFKEYK EVEN   K IK LRSDRGGE
Sbjct: 295 KARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGE 354

Query: 63  YMGLQFQDYLIEHEIQSQLSTPNTPQQNGVSERRNRTLLDM------------------- 122
           YM L+FQDY+IEH IQSQLS P TPQQNGVSERRNRTLLDM                   
Sbjct: 355 YMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAV 414

Query: 123 ------------------------------------GCPTHVLVQNPKKLERRSKLCLFV 182
                                               GCP HVLV NPKKLE RS+LC FV
Sbjct: 415 ETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFV 474

Query: 183 GYPKESKGGLFYDTQENKVFISTNATFLEEDHIRNHQTRSKLVLEEIFKNTT---DKPSS 242
           GYPKE++GGLF+D QEN+VF+STNATFLEEDH+RNH+ RSKLVL E    +T   D+   
Sbjct: 475 GYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGP 534

Query: 243 STKVVNKTRNIGQKHFSQELREPRRSGRVVQQPDRYLGLSEAQIVISDNGIEDQLTYKQT 302
           S++ V++T   GQ H SQ LR PRRSGRVV QP+RYLGL+E Q+VI D+G+ED L+YKQ 
Sbjct: 535 SSR-VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQA 594

Query: 303 MNDMECDQWVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKAR 362
           MND++ DQWVKA+DL+MESMYFNSVW LVD P  VKPIGCKWIYKRKRD AGKVQTFKAR
Sbjct: 595 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 654

Query: 363 LMAKGYTQKEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIY 397
           L+AKGYTQ+EGVDYEETFS VAMLKSIRILLSIATFYDYEI QMDVKTAFLNGNLE SI+
Sbjct: 655 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 714

[Close]

BLAST of Cmc05g0140271 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-32
Identity = 67/147 (45.58%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 253 WVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKARLMAKGYTQ 312
           W  A+D ++ +M     W +   P N KPIGCKW+YK K +  G ++ +KARL+AKGYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 313 KEGVDYEETFSSVAMLKSIRILLSIATFYDYEISQMDVKTAFLNGNLEVSIYMVQLKGFI 372
           +EG+D+ ETFS V  L S++++L+I+  Y++ + Q+D+  AFLNG+L+  IYM    G+ 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 373 QKGQE----QKVCKLQKSIYGLKQASR 396
            +  +      VC L+KSIYGLKQASR
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASR 244

[Close]

BLAST of Cmc05g0140271 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-13
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 253 WVKAIDLKMESMYFNSVWTLVDQPNNVKPIGCKWIYKRKRDQAGKVQTFKARLMAKGYTQ 312
           W +A+  +++++  N  W LV  P N   +GCKW++K K    G +   KARL+AKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 313 KEGVDYEETFSSVAMLKSIRILLSIA 339
           +EG+ + ET+S V    +IR +L++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc05g0140271 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.0e-175	73.05	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	1.5e-158	66.59	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	1.5e-158	66.59	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	2.6e-158	66.59	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02840.1	3.7e-157	66.37	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0140271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-61	33.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.2e-34	24.41	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	4.1e-34	24.39	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.5e-33	25.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	1.5e-12	38.37	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0140271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	5.0e-176	73.05	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	7.3e-159	66.59	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	7.3e-159	66.59	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5D3CYF4	1.2e-158	66.59	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5D3BUN8	1.8e-157	66.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]

BLAST of Cmc05g0140271 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.4e-32	45.58	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.1e-13	38.37	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 267..395 e-value: 2.4E-45 score: 155.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..117 e-value: 6.5E-24 score: 86.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..212
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 112..395
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..100 score: 15.998465
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0140271.1	Cmc05g0140271.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding