Cmc05g0139511 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0139511
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribonuclease H
Location	CMiso1.1chr05: 24074214 .. 24074999 (-)
RNA-Seq Expression	Cmc05g0139511
Synteny	Cmc05g0139511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTCTTTCGGTGTGTTGATGAGGAGGAAGCAAAACAAATTATGACAGACATTCATGAAGGAAAACGTGGAACACATGCTAATGGACATATGATGGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGAAATCAGACTGCATAAAATATGCAAGGGAATGTAAAAAGTATCAAATTTATATGGATAAGATCCATGTAGCAACATCTCCATTGCATGTCTTGTCAGCACCATGGCCATTTTCTTTGTGGGGAATGGATGTTATTGAACCCATTGATCCTAAAGCCTCAAATGGCCATCGTTTTATTCTTGTGGCCATTGATTACTTGACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTCAAGTTTATCAGGAAAGAGCTTATATGTCGTTATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCGACTCCATATCGTCCAAAGATGAATGGGGCAATTGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGCTGCATGGATATCGCACGTCAGTTCGTACTTCAACAGAGACAACACCATTTTCTTTAGTTTATGGTATGGAAGCTGTCTTACCTTTAGAAGTTGAAATACCTTCATTAAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTTAA

mRNA sequence

ATGGTGCTCTTTCGGTGTGTTGATGAGGAGGAAGCAAAACAAATTATGACAGACATTCATGAAGGAAAACGTGGAACACATGCTAATGGACATATGATGGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGAAATCAGACTGCATAAAATATGCAAGGGAATGTAAAAAGTATCAAATTTATATGGATAAGATCCATGTAGCAACATCTCCATTGCATGTCTTGTCAGCACCATGGCCATTTTCTTTGTGGGGAATGGATGTTATTGAACCCATTGATCCTAAAGCCTCAAATGGCCATCGTTTTATTCTTGTGGCCATTGATTACTTGACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTCAAGTTTATCAGGAAAGAGCTTATATGTCGTTATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCGACTCCATATCGTCCAAAGATGAATGGGGCAATTGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGCTGCATGGATATCGCACGTCAGTTCGTACTTCAACAGAGACAACACCATTTTCTTTAGTTTATGGTATGGAAGCTGTCTTACCTTTAGAAGTTGAAATACCTTCATTAAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTTAA

Coding sequence (CDS)

ATGGTGCTCTTTCGGTGTGTTGATGAGGAGGAAGCAAAACAAATTATGACAGACATTCATGAAGGAAAACGTGGAACACATGCTAATGGACATATGATGGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGAAATCAGACTGCATAAAATATGCAAGGGAATGTAAAAAGTATCAAATTTATATGGATAAGATCCATGTAGCAACATCTCCATTGCATGTCTTGTCAGCACCATGGCCATTTTCTTTGTGGGGAATGGATGTTATTGAACCCATTGATCCTAAAGCCTCAAATGGCCATCGTTTTATTCTTGTGGCCATTGATTACTTGACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTCAAGTTTATCAGGAAAGAGCTTATATGTCGTTATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCGACTCCATATCGTCCAAAGATGAATGGGGCAATTGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGCTGCATGGATATCGCACGTCAGTTCGTACTTCAACAGAGACAACACCATTTTCTTTAGTTTATGGTATGGAAGCTGTCTTACCTTTAGAAGTTGAAATACCTTCATTAAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTTAA

Protein sequence

MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKKYQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAASYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEA

Homology

[Close]

BLAST of Cmc05g0139511 vs. NCBI nr
Match: KAA0036934.1 (uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 512.7 bits (1319), Expect = 1.9e-141
Identity = 246/261 (94.25%), Postives = 251/261 (96.17%), Query Frame = 0


Query: 1   MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
           MVL RCVDEEEAKQIMTDI+EG  GTHANGHMMARQILRSGYYWTTM+SDCIKYARECKK
Sbjct: 516 MVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKK 575

Query: 61  YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
            QIYMDKIHVA SPLH+LSAPWPFSLWGMDVI PIDPKASNGHRFILVAIDY TKWIEAA
Sbjct: 576 CQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAA 635

Query: 121 SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
           SYCNVTRGVVLKFI+KELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP
Sbjct: 636 SYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 695

Query: 181 KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
           KMNGA+EAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTST  TPFSLVYGME V
Sbjct: 696 KMNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVV 755

Query: 241 LPLEVEIPSLRVLMEAKLDEA 262
           LPLEVEIPSLRVLMEAKLDEA
Sbjct: 756 LPLEVEIPSLRVLMEAKLDEA 776

[Close]

BLAST of Cmc05g0139511 vs. NCBI nr
Match: KAA0036943.1 (uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 511.9 bits (1317), Expect = 3.2e-141
Identity = 245/261 (93.87%), Postives = 251/261 (96.17%), Query Frame = 0


Query: 1   MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
           MVL RCVDEEEAKQIMTDI+EG  GTHANGHMMARQILRSGYYWTTM+SDCIKYARECKK
Sbjct: 203 MVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKK 262

Query: 61  YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
            QIYMDKIHVA S LH+LSAPWPFSLWGMDVI PIDPKASNGHRFILVAIDY TKWIEAA
Sbjct: 263 CQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAA 322

Query: 121 SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
           SYCNVTRGVVLKFI+KELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP
Sbjct: 323 SYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 382

Query: 181 KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
           KMNGA+EAANKNIKRI+EKMTITYKDWHEMLPFALHGYRTSVRTSTE TPFSLVYGME V
Sbjct: 383 KMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYGMEVV 442

Query: 241 LPLEVEIPSLRVLMEAKLDEA 262
           LPLEVEIPSLRVLMEAKLDEA
Sbjct: 443 LPLEVEIPSLRVLMEAKLDEA 463

[Close]

BLAST of Cmc05g0139511 vs. NCBI nr
Match: KAA0037621.1 (uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa])

HSP 1 Score: 500.7 bits (1288), Expect = 7.4e-138
Identity = 240/261 (91.95%), Postives = 246/261 (94.25%), Query Frame = 0


Query: 1    MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
            MVL RCVDEEEAKQIM DIHEG   THANGHMMARQILRS YYWTTM+SDCIKY RECKK
Sbjct: 1570 MVLLRCVDEEEAKQIMIDIHEGICETHANGHMMARQILRSDYYWTTMESDCIKYVRECKK 1629

Query: 61   YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
             QIYMDKIHVA SPLH+LSAPWPFSLWGMDVI PIDPKASNGHRF LV+IDY TKWIE A
Sbjct: 1630 CQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFTLVSIDYFTKWIEVA 1689

Query: 121  SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
            S+CNVTRGVVLKFI+KELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP
Sbjct: 1690 SFCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 1749

Query: 181  KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
            KMNGA+EAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTST  TPFSLVYGMEAV
Sbjct: 1750 KMNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAV 1809

Query: 241  LPLEVEIPSLRVLMEAKLDEA 262
            LPLEVEIPSLRVLMEAKLDEA
Sbjct: 1810 LPLEVEIPSLRVLMEAKLDEA 1830

[Close]

BLAST of Cmc05g0139511 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 498.8 bits (1283), Expect = 2.8e-137
Identity = 239/261 (91.57%), Postives = 247/261 (94.64%), Query Frame = 0


Query: 1    MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
            MVL RCVD EEAKQIM +IHEG  GTHANGH MARQILRSGYYWTTM+SDCIKYARECKK
Sbjct: 2267 MVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKK 2326

Query: 61   YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
             QIYMD+IH A SPLHVLSAPWPFSLWG+DVI PIDPKASNGHRFILVAIDY TKWIEAA
Sbjct: 2327 CQIYMDRIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAA 2386

Query: 121  SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
            SYCNVTRGVVLKFI+KELICRYGLPEGIITDNAKNLNNKMMDELCE+FKINHRNSTPYRP
Sbjct: 2387 SYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEKFKINHRNSTPYRP 2446

Query: 181  KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
            KMNGA+EAANKNIKRIIEKMT TYKDWHE+LPFALHGYRTSVRTST  TPFSLVYGMEAV
Sbjct: 2447 KMNGAVEAANKNIKRIIEKMTTTYKDWHEILPFALHGYRTSVRTSTGATPFSLVYGMEAV 2506

Query: 241  LPLEVEIPSLRVLMEAKLDEA 262
            LPLEVEIPSLRVLMEAKLDEA
Sbjct: 2507 LPLEVEIPSLRVLMEAKLDEA 2527

[Close]

BLAST of Cmc05g0139511 vs. NCBI nr
Match: XP_031741698.1 (uncharacterized protein LOC116403895 [Cucumis sativus])

HSP 1 Score: 498.8 bits (1283), Expect = 2.8e-137
Identity = 239/261 (91.57%), Postives = 247/261 (94.64%), Query Frame = 0


Query: 1    MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
            MVL RCVD EEAKQIM +IHEG  GTHANGH MARQILRSGYYWTTM+SDCIKYARECKK
Sbjct: 1934 MVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKK 1993

Query: 61   YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
             QIYMD+IH A SPLHVLSAPWPFSLWG+DVI PIDPKASNGHRFILVAIDY TKWIEAA
Sbjct: 1994 CQIYMDRIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAA 2053

Query: 121  SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
            SYCNVTRGVVLKFI+KELICRYGLPEGIITDNAKNLNNKMMDELCE+FKINHRNSTPYRP
Sbjct: 2054 SYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEKFKINHRNSTPYRP 2113

Query: 181  KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
            KMNGA+EAANKNIKRIIEKMT TYKDWHE+LPFALHGYRTSVRTST  TPFSLVYGMEAV
Sbjct: 2114 KMNGAVEAANKNIKRIIEKMTTTYKDWHEILPFALHGYRTSVRTSTGATPFSLVYGMEAV 2173

Query: 241  LPLEVEIPSLRVLMEAKLDEA 262
            LPLEVEIPSLRVLMEAKLDEA
Sbjct: 2174 LPLEVEIPSLRVLMEAKLDEA 2194

[Close]

BLAST of Cmc05g0139511 vs. ExPASy Swiss-Prot
Match: P03360 (Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=pol PE=1 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-16
Identity = 51/157 (32.48%), Postives = 83/157 (52.87%), Query Frame = 0


Query: 83   PFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAASYCNVTRGVVLKFIRKELICRY 142
            P   W +D  E I   A  G++++LV +D  + W+EA      T  VV+K +  ++I R+
Sbjct: 867  PGEHWEVDFTEMI--TAKGGYKYLLVLVDTFSGWVEAYPAKRETSQVVIKHLIHDIIPRF 926

Query: 143  GLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAIEAANKNIKRIIEKMTI 202
            GLP  I +DN      K+  +LCE   ++ +    YRP+ +G +E  N+ +K  I K+ I
Sbjct: 927  GLPVQIGSDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKETIAKLRI 986

Query: 203  -TYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGME 239
             T  DW  +LP AL   R +       +PF ++YG++
Sbjct: 987  ETGGDWVSLLPQALLRARCTPGRE-GLSPFEILYGLK 1020

[Close]

BLAST of Cmc05g0139511 vs. ExPASy Swiss-Prot
Match: P10273 (Gag-Pol polyprotein OS=Feline leukemia virus OX=11768 GN=pol PE=3 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-15
Identity = 65/233 (27.90%), Postives = 111/233 (47.64%), Query Frame = 0


Query: 9    EEEAKQIMTDIHEGKRGTHANGHMMARQILR--SGYYWTTMKSDCIKYARECKK-YQIYM 68
            E+ AK++++ +H   + TH +   M   + R  +G+Y         +    C+   QI  
Sbjct: 1343 EKYAKELISHLH---KLTHLSARKMKTLLEREETGFYLPNRDLHLRQVTESCRACAQINA 1402

Query: 69   DKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAASYCNV 128
             KI     P        P + W +D  E I P    G++++LV ID  + W EA    + 
Sbjct: 1403 GKIKF--GPDVRARGRRPGTHWEVDFTE-IKP-GMYGYKYLLVFIDTFSGWAEAYPAKHE 1462

Query: 129  TRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGA 188
            T  VV K + +E+  RYG+P+ + +DN     +++   +     IN +    YRP+ +G 
Sbjct: 1463 TAKVVAKKLLEEIFPRYGIPQVLGSDNGPAFISQVSQSVATLLGINWKLHCAYRPQSSGQ 1522

Query: 189  IEAANKNIKRIIEKMTIT--YKDWHEMLPFALHGYRTSVRTSTETTPFSLVYG 237
            +E  N++IK  + K+T+    KDW  +LP  L+  R +       TPF ++YG
Sbjct: 1523 VERMNRSIKETLTKLTLETGSKDWVLLLPLVLYRVRNTPGPH-GLTPFEILYG 1567

[Close]

BLAST of Cmc05g0139511 vs. ExPASy Swiss-Prot
Match: P03355 (Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) OX=928306 GN=gag-pol PE=1 SV=5)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-14
Identity = 49/156 (31.41%), Postives = 83/156 (53.21%), Query Frame = 0


Query: 83   PFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAASYCNVTRGVVLKFIRKELICRY 142
            P + W +D  E I P    G++++LV ID  + WIEA      T  VV K + +E+  R+
Sbjct: 1448 PGTHWEIDFTE-IKP-GLYGYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRF 1507

Query: 143  GLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAIEAANKNIKRIIEKMTI 202
            G+P+ + TDN     +K+   + +   I+ +    YRP+ +G +E  N+ IK  + K+T+
Sbjct: 1508 GMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 1567

Query: 203  T--YKDWHEMLPFALHGYRTSVRTSTETTPFSLVYG 237
                +DW  +LP AL+  R +       TP+ ++YG
Sbjct: 1568 ATGSRDWVLLLPLALYRARNTPGPH-GLTPYEILYG 1600

[Close]

BLAST of Cmc05g0139511 vs. ExPASy Swiss-Prot
Match: P08361 (Gag-Pol polyprotein OS=Cas-Br-E murine leukemia virus OX=11792 GN=gag-pol PE=3 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 3.1e-14
Identity = 47/156 (30.13%), Postives = 83/156 (53.21%), Query Frame = 0


Query: 83   PFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAASYCNVTRGVVLKFIRKELICRY 142
            P + W +D  E + P    G++++LV +D  + WIEA      T  VV K + +E+  R+
Sbjct: 1446 PGTHWEIDFTE-VKP-GLYGYKYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRF 1505

Query: 143  GLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAIEAANKNIKRIIEKMTI 202
            G+P+ + TDN     +K+   + +   I+ +    YRP+ +G +E  N+ IK  + K+T+
Sbjct: 1506 GMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 1565

Query: 203  T--YKDWHEMLPFALHGYRTSVRTSTETTPFSLVYG 237
                +DW  +LP AL+  R +       TP+ ++YG
Sbjct: 1566 ATGSRDWVLLLPLALYRARNTPGPH-GLTPYEILYG 1598

[Close]

BLAST of Cmc05g0139511 vs. ExPASy Swiss-Prot
Match: P26809 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) OX=11797 GN=pol PE=3 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14
Identity = 46/156 (29.49%), Postives = 83/156 (53.21%), Query Frame = 0


Query: 83   PFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAASYCNVTRGVVLKFIRKELICRY 142
            P + W +D  E + P    G++++LV ID  + W+EA      T  VV K + +E+  R+
Sbjct: 1448 PGTHWEIDFTE-VKP-GLYGYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRF 1507

Query: 143  GLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRPKMNGAIEAANKNIKRIIEKMTI 202
            G+P+ + TDN     +K+   + +   ++ +    YRP+ +G +E  N+ IK  + K+T+
Sbjct: 1508 GMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 1567

Query: 203  T--YKDWHEMLPFALHGYRTSVRTSTETTPFSLVYG 237
                +DW  +LP AL+  R +       TP+ ++YG
Sbjct: 1568 ATGSRDWVLLLPLALYRARNTPGPH-GLTPYEILYG 1600

[Close]

BLAST of Cmc05g0139511 vs. ExPASy TrEMBL
Match: A0A5A7T0A1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 9.1e-142
Identity = 246/261 (94.25%), Postives = 251/261 (96.17%), Query Frame = 0


Query: 1   MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
           MVL RCVDEEEAKQIMTDI+EG  GTHANGHMMARQILRSGYYWTTM+SDCIKYARECKK
Sbjct: 516 MVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKK 575

Query: 61  YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
            QIYMDKIHVA SPLH+LSAPWPFSLWGMDVI PIDPKASNGHRFILVAIDY TKWIEAA
Sbjct: 576 CQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAA 635

Query: 121 SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
           SYCNVTRGVVLKFI+KELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP
Sbjct: 636 SYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 695

Query: 181 KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
           KMNGA+EAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTST  TPFSLVYGME V
Sbjct: 696 KMNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVV 755

Query: 241 LPLEVEIPSLRVLMEAKLDEA 262
           LPLEVEIPSLRVLMEAKLDEA
Sbjct: 756 LPLEVEIPSLRVLMEAKLDEA 776

[Close]

BLAST of Cmc05g0139511 vs. ExPASy TrEMBL
Match: A0A5A7T1X2 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00190 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.6e-141
Identity = 245/261 (93.87%), Postives = 251/261 (96.17%), Query Frame = 0


Query: 1   MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
           MVL RCVDEEEAKQIMTDI+EG  GTHANGHMMARQILRSGYYWTTM+SDCIKYARECKK
Sbjct: 203 MVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKK 262

Query: 61  YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
            QIYMDKIHVA S LH+LSAPWPFSLWGMDVI PIDPKASNGHRFILVAIDY TKWIEAA
Sbjct: 263 CQIYMDKIHVAASSLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAA 322

Query: 121 SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
           SYCNVTRGVVLKFI+KELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP
Sbjct: 323 SYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 382

Query: 181 KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
           KMNGA+EAANKNIKRI+EKMTITYKDWHEMLPFALHGYRTSVRTSTE TPFSLVYGME V
Sbjct: 383 KMNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYGMEVV 442

Query: 241 LPLEVEIPSLRVLMEAKLDEA 262
           LPLEVEIPSLRVLMEAKLDEA
Sbjct: 443 LPLEVEIPSLRVLMEAKLDEA 463

[Close]

BLAST of Cmc05g0139511 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 3.6e-138
Identity = 240/261 (91.95%), Postives = 246/261 (94.25%), Query Frame = 0


Query: 1    MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
            MVL RCVDEEEAKQIM DIHEG   THANGHMMARQILRS YYWTTM+SDCIKY RECKK
Sbjct: 1570 MVLLRCVDEEEAKQIMIDIHEGICETHANGHMMARQILRSDYYWTTMESDCIKYVRECKK 1629

Query: 61   YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
             QIYMDKIHVA SPLH+LSAPWPFSLWGMDVI PIDPKASNGHRF LV+IDY TKWIE A
Sbjct: 1630 CQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFTLVSIDYFTKWIEVA 1689

Query: 121  SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
            S+CNVTRGVVLKFI+KELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP
Sbjct: 1690 SFCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 1749

Query: 181  KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
            KMNGA+EAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTST  TPFSLVYGMEAV
Sbjct: 1750 KMNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAV 1809

Query: 241  LPLEVEIPSLRVLMEAKLDEA 262
            LPLEVEIPSLRVLMEAKLDEA
Sbjct: 1810 LPLEVEIPSLRVLMEAKLDEA 1830

[Close]

BLAST of Cmc05g0139511 vs. ExPASy TrEMBL
Match: A0A5D3DW43 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00780 PE=4 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.8e-137
Identity = 242/261 (92.72%), Postives = 246/261 (94.25%), Query Frame = 0


Query: 1   MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
           MVL RCVDEEEAKQIMTDIHEG  GTHANGHM+ARQILRSGYYWTTM+SDCIKYARE KK
Sbjct: 56  MVLLRCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKK 115

Query: 61  YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
            QIYMDKIHVA SPLHVLSAPWPFSLWGMDVI PIDPKASNGHRFILVAIDY TKWIE A
Sbjct: 116 CQIYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVA 175

Query: 121 SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
           SYCNVTRGVVLKFI+KELICRYGLPE IITDNAKNLNNKMMDELCEQFKINHRNSTPYRP
Sbjct: 176 SYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 235

Query: 181 KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
           KMNGA+EAANKNIKRIIEKMTITYKDWHEML FALH YRTSVRTST  TPFSLVYGME V
Sbjct: 236 KMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVV 295

Query: 241 LPLEVEIPSLRVLMEAKLDEA 262
           LPLEVEIPSLRVLMEAKLDEA
Sbjct: 296 LPLEVEIPSLRVLMEAKLDEA 316

[Close]

BLAST of Cmc05g0139511 vs. ExPASy TrEMBL
Match: A0A5A7VLW3 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00840 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.2e-137
Identity = 241/261 (92.34%), Postives = 246/261 (94.25%), Query Frame = 0


Query: 1   MVLFRCVDEEEAKQIMTDIHEGKRGTHANGHMMARQILRSGYYWTTMKSDCIKYARECKK 60
           MVL +CVDEEEAKQIMTDIHEG  GTHANGHM+ARQILRSGYYWTTM+SDCIKYARE KK
Sbjct: 56  MVLLQCVDEEEAKQIMTDIHEGICGTHANGHMIARQILRSGYYWTTMESDCIKYAREWKK 115

Query: 61  YQIYMDKIHVATSPLHVLSAPWPFSLWGMDVIEPIDPKASNGHRFILVAIDYLTKWIEAA 120
            QIYMDKIHVA SPLHVLSAPWPFSLWGMDVI PIDPKASNGHRFILVAIDY TKWIE A
Sbjct: 116 CQIYMDKIHVAVSPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEVA 175

Query: 121 SYCNVTRGVVLKFIRKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 180
           SYCNVTRGVVLKFI+KELICRYGLPE IITDNAKNLNNKMMDELCEQFKINHRNSTPYRP
Sbjct: 176 SYCNVTRGVVLKFIKKELICRYGLPESIITDNAKNLNNKMMDELCEQFKINHRNSTPYRP 235

Query: 181 KMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTETTPFSLVYGMEAV 240
           KMNGA+EAANKNIKRIIEKMTITYKDWHEML FALH YRTSVRTST  TPFSLVYGME V
Sbjct: 236 KMNGAVEAANKNIKRIIEKMTITYKDWHEMLLFALHRYRTSVRTSTWATPFSLVYGMEVV 295

Query: 241 LPLEVEIPSLRVLMEAKLDEA 262
           LPLEVEIPSLRVLMEAKLDEA
Sbjct: 296 LPLEVEIPSLRVLMEAKLDEA 316

The following BLAST results are available for this feature:

BLAST of Cmc05g0139511 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036934.1	1.9e-141	94.25	uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]	[more]
KAA0036943.1	3.2e-141	93.87	uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]	[more]
KAA0037621.1	7.4e-138	91.95	uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]	[more]
XP_031738551.1	2.8e-137	91.57	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]
XP_031741698.1	2.8e-137	91.57	uncharacterized protein LOC116403895 [Cucumis sativus]	[more]

BLAST of Cmc05g0139511 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P03360	1.1e-16	32.48	Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=...	[more]
P10273	4.8e-15	27.90	Gag-Pol polyprotein OS=Feline leukemia virus OX=11768 GN=pol PE=3 SV=2	[more]
P03355	1.8e-14	31.41	Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) OX=92830...	[more]
P08361	3.1e-14	30.13	Gag-Pol polyprotein OS=Cas-Br-E murine leukemia virus OX=11792 GN=gag-pol PE=3 S...	[more]
P26809	4.1e-14	29.49	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) OX=11797 GN=p...	[more]

BLAST of Cmc05g0139511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0A1	9.1e-142	94.25	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 ...	[more]
A0A5A7T1X2	1.6e-141	93.87	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00190 ...	[more]
A0A5A7T7R4	3.6e-138	91.95	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]
A0A5D3DW43	1.8e-137	92.72	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VLW3	5.2e-137	92.34	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Cmc05g0139511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 83..180 e-value: 4.5E-11 score: 42.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 77..238 score: 21.197628
None	No IPR available	GENE3D	1.10.340.70		coord: 2..64 e-value: 9.6E-11 score: 43.8
None	No IPR available	PANTHER	PTHR24559:SF342	SUBFAMILY NOT NAMED	coord: 37..260
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 37..260
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 7..64 e-value: 1.9E-7 score: 31.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 76..259 e-value: 7.3E-51 score: 174.3
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 81..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0139511.1	Cmc05g0139511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding