Cmc05g0137551 (gene) Melon (Charmono) v1.1

Overview
NameCmc05g0137551
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
LocationCMiso1.1chr05: 21068462 .. 21070627 (+)
RNA-Seq ExpressionCmc05g0137551
SyntenyCmc05g0137551
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACATTTCACAAAACTATTTTTTTAATCATTTAGAATTTTTTCTTTTAAATTTACATTTTTTTATGTTTTCCAAACATTCAAAATTTAATCTACAATTTCATAGGATTTCTCAATAAATTTTTTCTAATAACTTATACCCTTTTTCCTAAACGAAATCTTATGACGGAATCTACGAAATTTGGGAGTTTAATTTCCTAGAATTCTTGAGGTGAGAGATCACATCTTTGGGAGTCCAAGATTTAATCCCAATAAAAAATAGTTTTAATTAATGTTAAAAAAAAAACTCTTTATTAGAAGGCTATTCCTATGACGAATTTTGAGAAATTATACTAATTCCTCATTTTCTTGAGGTGAGAAGATTTTCTTCAATATAGTCTAATGGATGGAATATTTTCCACTTATTTTATGAGATCATTGCTTCAAATATTGGAGTAATGAGGGATAAAATAAGAGATTGTTTTTTTTTAAGAAATTAAAGAATATTTTCAATTCAAGATTTGAAATTTGGCCACCGTTTTCTGAACGGGTGTTGTGAGGTACTAACACATTCCTCATACACAAATGACTCCCGAACTCAACTCTAGTTTTTGCAAACCATTTTTTATGATTGTTTACTTTATTTCGGTATCCAATCACACCGTAAAAAGGATTGGTGGTGACTCTTATTTTGTTTTGAAACTAACCCATTTTGAGGACGTCGACTGCTCAACATCATTCCGGGCACGTGGCGACACATTACATAGAGACCTCCAATGAGTGGAGTCAGTGAAGGGATGAGCTTACAGATGAAATGTTTAGTGACTGGGAGTTGCGTAACCAGTAGAACAATTAGTGTACCACAATTGAATGTTCGTCGTTCATTTTCATACTTAAGTATTAATTGCATTGGGTCTTATTTTGTCATAGTTTTTGGAATATATTTGTTTCGAATGTATTGATTACGTATAAATGAATGGCAAACTGTTTTTTAGTAGGAGTTGAATGCATTATGTATTGTATTGTGTATTCGTAGGGAACTTAATGACACTAATATGTTTGCATTTGATTTATAGCATTAAAACTACATCGAGACTACTCATGCAAGTTGGACAAAATTGGAAGAGGCATGCCTCATCGAGTTAGTAAATGTTGGTGGCTGGAGGTCCGACAATGGGACCTTTCGCCCGGGTACCTAAATTAGCTCGCAAGAATGATGGTCTTTAAGATCCCAAGTTGTAGTGTCCATGCATCAATGATCGATAGCCGAATAAAATTGTTGAAGAGAACGTTCCATGTGCTAGCTAAGATGCGTTATCCGATTTGCAGTGGGTTTAGGTGGAACGATGAATAAAAGTGCATCGTCGTAGAGAAAGAAGTGTTCGACGATTGAGTCAGGGTGCGTTATTAGTTATGTGAACCAGTACTGTAGTATATTTACAAAAAGTACTAACCATTTATTATTGCACTTGAACAGAGTCATCTGATAGCGCAGAGCCTTCTTAATAAATTGTTTTCCTACTATGACGAACTGTCGTACGTCTTTGGCAAAGATTGTGTGATGGGAGGCCGAACCAAGAATTTTGTAGACGTCGAGTCTAATGATCATGTTGGGTACAAGGCATTTTCCGCTGACGCTGCACCAGATATAGAGTTCCAACCTATGTACAATCAGGGTTTGGACTTGTCACCTAACGAATTAATGGGAACAAGAACCGCTCGGTTAAGTGAAGGTAGTCATGCTTCAAGCGGGTTTAAGTAGAAATGTGGAGGACAGCCCGCAGACAGTGGGGACGTAATTCACACTCAATTGAGTATAACAATGAACAACTTAACCGCATTGCTGACTGGCCTATCCTACAATGTCAAGACGCAAGCCAAACGCGACAATAGGTCGTTCAACAGTTGGAAGCCATCCCTGAGCTGACATTGATGGATAAGTGTCGCTTAATGTGCATATTGATTCATAATGTGGATGACATGAAAGGTTTCCTTGACGTTCCCGACAAAATGAAGTTTCCGTACTGCAACATCATTCTTCAAGAAAACTCATGACCACTTTGTTTGTTCTATTTGTATTAGTGGCTTTTCAGACTTTGACTATATGTTCTTCTTATCATGTGTTTGGTCTTCTTATCGTATGTACTTCTCTTTGTATTCAAGCTTTTATGGTCTATACTTTCATTT

mRNA sequence

AAAACATTTCACAAAACTATTTTTTTAATCATTTAGAATTTTTTCTTTTAAATTTACATTTTTTTATGTTTTCCAAACATTCAAAATTTAATCTACAATTTCATAGGATTTCTCAATAAATTTTTTCTAATAACTTATACCCTTTTTCCTAAACGAAATCTTATGACGGAATCTACGAAATTTGGGAGTTTAATTTCCTAGAATTCTTGAGGTGAGAGATCACATCTTTGGGAGTCCAAGATTTAATCCCAATAAAAAATAGTTTTAATTAATGTTAAAAAAAAAACTCTTTATTAGAAGGCTATTCCTATGACGAATTTTGAGAAATTATACTAATTCCTCATTTTCTTGAGGTGAGAAGATTTTCTTCAATATAGTCTAATGGATGGAATATTTTCCACTTATTTTATGAGATCATTGCTTCAAATATTGGAGTAATGAGGGATAAAATAAGAGATTGTTTTTTTTTAAGAAATTAAAGAATATTTTCAATTCAAGATTTGAAATTTGGCCACCGTTTTCTGAACGGGTGTTGTGAGGTACTAACACATTCCTCATACACAAATGACTCCCGAACTCAACTCTAGTTTTTGCAAACCATTTTTTATGATTGTTTACTTTATTTCGGTATCCAATCACACCGTAAAAAGGATTGGTGGTGACTCTTATTTTGTTTTGAAACTAACCCATTTTGAGGACGTCGACTGCTCAACATCATTCCGGGCACGTGGCGACACATTACATAGAGACCTCCAATGAGTGGAGTCAGTGAAGGGATGAGCTTACAGATGAAATGTTTAGTGACTGGGAGTTGCGTAACCAGTAGAACAATTAGTGTACCACAATTGAATCATTAAAACTACATCGAGACTACTCATGCAAGTTGGACAAAATTGGAAGAGGCATGCCTCATCGAGTTAGTAAATGTTGGTGGCTGGAGGTCCGACAATGGGACCTTTCGCCCGGGTACCTAAATTAGCTCGCAAGAATGATGGTCTTTAAGATCCCAAGTTGTAGTGTCCATGCATCAATGATCGATAGCCGAATAAAATTGTTGAAGAGAACGTTCCATGTGCTAGCTAAGATGCGTTATCCGATTTGCAGTGGGTTTAGGTGGAACGATGAATAAAAGTGCATCGTCGTAGAGAAAGAAGTGTTCGACGATTGAGTCAGGAGTCATCTGATAGCGCAGAGCCTTCTTAATAAATTGTTTTCCTACTATGACGAACTGTCGTACGTCTTTGGCAAAGATTGTGTGATGGGAGGCCGAACCAAGAATTTTGTAGACGTCGAGTCTAATGATCATGTTGGGTACAAGGCATTTTCCGCTGACGCTGCACCAGATATAGAGTTCCAACCTATGTACAATCAGGGTTTGGACTTGTCACCTAACGAATTAATGGGAACAAGAACCGCTCGGTTAAGTGAAGGTAGTCATGCTTCAAGCGGGTTTAAGTAGAAATGTGGAGGACAGCCCGCAGACAGTGGGGACGTAATTCACACTCAATTGAGTATAACAATGAACAACTTAACCGCATTGCTGACTGGCCTATCCTACAATGTCAAGACGCAAGCCAAACGCGACAATAGGTCGTTCAACAGTTGGAAGCCATCCCTGAGCTGACATTGATGGATAAGTGTCGCTTAATGTGCATATTGATTCATAATGTGGATGACATGAAAGGTTTCCTTGACGTTCCCGACAAAATGAAGTTTCCGTACTGCAACATCATTCTTCAAGAAAACTCATGACCACTTTGTTTGTTCTATTTGTATTAGTGGCTTTTCAGACTTTGACTATATGTTCTTCTTATCATGTGTTTGGTCTTCTTATCGTATGTACTTCTCTTTGTATTCAAGCTTTTATGGTCTATACTTTCATTT

Coding sequence (CDS)

ATGGGAGGCCGAACCAAGAATTTTGTAGACGTCGAGTCTAATGATCATGTTGGGTACAAGGCATTTTCCGCTGACGCTGCACCAGATATAGAGTTCCAACCTATGTACAATCAGGGTTTGGACTTGTCACCTAACGAATTAATGGGAACAAGAACCGCTCGGTTAAGTGAAGGTAGTCATGCTTCAAGCGGGTTTAAGTAG

Protein sequence

MGGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSHASSGFK
Homology
[Close]
BLAST of Cmc05g0137551 vs. NCBI nr
Match: KAA0040875.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1   MGGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH 60
           M GRTK FVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH
Sbjct: 43  MRGRTKTFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH 102

Query: 61  ASSGFK 67
           ASSGFK
Sbjct: 103 ASSGFK 108

[Close]
BLAST of Cmc05g0137551 vs. NCBI nr
Match: TYK03058.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 5.4e-21
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MGGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH 60
           MGGR + FVDVESNDHVGYKAF+ DAAPDIEFQ MY+QGLDL P ELM TRT RLSEG H
Sbjct: 43  MGGRIETFVDVESNDHVGYKAFAVDAAPDIEFQLMYSQGLDLLPIELMRTRTTRLSEGRH 102

Query: 61  ASSGFK 67
           ASSGFK
Sbjct: 103 ASSGFK 108

[Close]
BLAST of Cmc05g0137551 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 2   GGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSHA 61
           GGR ++F DV SND  GY AF+A+AA D +FQPMY++GL++SP+ELMGTRTAR+SEG + 
Sbjct: 113 GGRAESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYV 172

Query: 62  SSGFK 67
           SSG K
Sbjct: 173 SSGSK 177

[Close]
BLAST of Cmc05g0137551 vs. NCBI nr
Match: KAA0052090.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00702.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 9.9e-15
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 2   GGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSHA 61
           GGR K+FVDV SND  GY AF ADAAPD++F PMY+QGL++SP++LMG RTAR+SEGS A
Sbjct: 113 GGRAKSFVDVGSNDPAGYDAFVADAAPDMDFPPMYSQGLNMSPDDLMGIRTARVSEGSTA 172

[Close]
BLAST of Cmc05g0137551 vs. NCBI nr
Match: KAA0060558.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-14
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1   MGGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH 60
           M G  ++F+DV SND +GY+AF+ DAAPD  FQ MY+QGL++SP+ELMGTRTAR+SEG +
Sbjct: 344 MRGWVESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRY 403

Query: 61  ASSGFK 67
            SSG K
Sbjct: 404 VSSGSK 409

[Close]
BLAST of Cmc05g0137551 vs. ExPASy TrEMBL
Match: A0A5A7THK6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00320 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.5e-28
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1   MGGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH 60
           M GRTK FVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH
Sbjct: 43  MRGRTKTFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH 102

Query: 61  ASSGFK 67
           ASSGFK
Sbjct: 103 ASSGFK 108

[Close]
BLAST of Cmc05g0137551 vs. ExPASy TrEMBL
Match: A0A5D3BVN0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001550 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MGGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH 60
           MGGR + FVDVESNDHVGYKAF+ DAAPDIEFQ MY+QGLDL P ELM TRT RLSEG H
Sbjct: 43  MGGRIETFVDVESNDHVGYKAFAVDAAPDIEFQLMYSQGLDLLPIELMRTRTTRLSEGRH 102

Query: 61  ASSGFK 67
           ASSGFK
Sbjct: 103 ASSGFK 108

[Close]
BLAST of Cmc05g0137551 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 2   GGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSHA 61
           GGR ++F DV SND  GY AF+A+AA D +FQPMY++GL++SP+ELMGTRTAR+SEG + 
Sbjct: 113 GGRAESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYV 172

Query: 62  SSGFK 67
           SSG K
Sbjct: 173 SSGSK 177

[Close]
BLAST of Cmc05g0137551 vs. ExPASy TrEMBL
Match: A0A5D3BPL3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00530 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.8e-15
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 2   GGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSHA 61
           GGR K+FVDV SND  GY AF ADAAPD++F PMY+QGL++SP++LMG RTAR+SEGS A
Sbjct: 113 GGRAKSFVDVGSNDPAGYDAFVADAAPDMDFPPMYSQGLNMSPDDLMGIRTARVSEGSTA 172

[Close]
BLAST of Cmc05g0137551 vs. ExPASy TrEMBL
Match: A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.2e-15
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1   MGGRTKNFVDVESNDHVGYKAFSADAAPDIEFQPMYNQGLDLSPNELMGTRTARLSEGSH 60
           M G  ++F+DV SND +GY+AF+ DAAPD  FQ MY+QGL++SP+ELMGTRTAR+SEG +
Sbjct: 344 MRGWVESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDELMGTRTARVSEGRY 403

Query: 61  ASSGFK 67
            SSG K
Sbjct: 404 VSSGSK 409

The following BLAST results are available for this feature:
BLAST of Cmc05g0137551 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040875.11.7e-2796.97retrotransposon protein [Cucumis melo var. makuwa][more]
TYK03058.15.4e-2181.82retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048374.14.5e-1564.62retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p... [more]
KAA0052090.19.9e-1570.00retrotransposon protein [Cucumis melo var. makuwa] >TYK00702.1 retrotransposon p... [more]
KAA0060558.11.7e-1463.64retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon p... [more]
BLAST of Cmc05g0137551 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc05g0137551 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7THK68.5e-2896.97Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BVN02.6e-2181.82Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZA52.2e-1564.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BPL34.8e-1570.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BRF08.2e-1563.64Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Cmc05g0137551 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc05g0137551.1Cmc05g0137551.1mRNA